BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05282.1
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487321 jgi|Araly1|487321|fgenesh2_kg.6__455__AT5G05282.1 1315 0.0
> Ahg487321 jgi|Araly1|487321|fgenesh2_kg.6__455__AT5G05282.1
Length=913
Score = 1315 bits (712), Expect = 0.0
Identities = 871/941 (93%), Gaps = 37/941 (4%)
Strand=Plus/Plus
Query 14 ATTTCCTACTCTTATAGTACAACTTATTTCCTTATGTGTAAAACCCAAAGAAGAACTTGT 73
||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||
Sbjct 1 ATTTCCTACTCTTATAGAACAACTTATTTCCTTTTGTGTAAAACTCAAATAAGAACTTGT 60
Query 74 ATAAAGAAACAGATCATAAAGGATTTGAGCTTTGATTTTTCTCCATGGATTTATCAAGTC 133
||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||
Sbjct 61 ATAAAGAAACAGATCATTAAGGATTTGAGATTTGA--TATCTCCATGGATTTATCAAGTC 118
Query 134 TTTGAGTTTCAGACTGGAAACTAAGCCTCGGAGTAAAAGAGAGAACAAAAGC--ACTCTT 191
||||||||||||||||||| | ||||||| |||||||||||| ||||||||| | ||||
Sbjct 119 TTTGAGTTTCAGACTGGAATCGAAGCCTCAGAGTAAAAGAGAAAACAAAAGCTGA-TCTT 177
Query 192 GTGCTTATCATAGCATGAAGAAACTTGACTCTTTCATCTCAGTCTCTTTCGTAGTCCGAT 251
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 178 GTGCTTATCATAGCATGAAGAAACTTGAATCTCTCATCTCAGTCTCTTTTGTAGTCCGAT 237
Query 252 TCGAACAGAAACTGGAGCAATAAGAAAAAGAAGAAGAAGAACCTTGAAGGTGAGTTaaaa 311
||||||| |||| ||||||| ||||||||||| | | || |
Sbjct 238 TCGAACATAAACCAGAGCAAT---------AAGAAGAAGAA----G-A----AG-----A 274
Query 312 aaaaaaGAAGATTTGTGCATCTGTTTCTGAAA-CGTTTACAGATGGCTAGATTTTTACTT 370
|||||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 275 AAAAAA-AAGATTTGTGCATCTGTTTCT-AAAGCGTTTACAGATGGCTAGATTCTTACTT 332
Query 371 GCGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGAC 430
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GAGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGAC 392
Query 431 TCTGTCAGCAACAACAAGAATATAGCTAGCATGGATACACACATGGTGATCATACTAGCC 490
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 393 TCTGTCAGCAACAACAAGAATATAGCTAGCATGGGTACACACATGGTGATCGTACTAGCC 452
Query 491 GCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTA 512
Query 551 CGCTGCACGAGAAGGTTCACTCCCAACGAAGATCCAGTTGACACCAATGCAAACGTA--- 607
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 513 GGCTGCACGAGAAGGTTCACTCCCGACGAAGATCCAGTTGACACTAACGCAAACGTAAAC 572
Query 608 G---CAAAGGGGATCAAGAAACGGGCGTTGAAGGTTATTCCGGTTGATTCATACAGTCCT 664
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 573 GTAGCAAAGGGGATCAAGAAACGGGCGTTGAAGCTTATTCCGGTTGATTCATACAGTCTT 632
Query 665 GAGCTTAAGATGAAAGCCACGGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAG 724
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 633 GAGCTTAAGATGAAAGCCACAGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAG 692
Query 725 ACAGTTAGGGTTTTGCCCAAATGTAACCATGGCTTCCACGTCAAGTGCATCGACACTTGG 784
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 693 ACAGTTAGGGTTTTGCCCAAATGTAGCCATGGCTTCCACGTCAAGTGCATCGACACTTGG 752
Query 785 TTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCA 812
Query 845 GCAAATGGTTCCCGGCGGGGTGATGACGTGGCAACGTAACAGAGCTTCATGAGGTCACTT 904
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GCTAATGGCTCCCGGCGGGGTGATGACGTGGCAACGTAACAGAGCTTCATGAGGTCACTT 872
Query 905 TCAATGTTGAGTGTTTGCTTCACCTAAGTAGGTTTTCTTCT 945
|||||||||||| ||||||||||||||||||||||| ||||
Sbjct 873 TCAATGTTGAGTTTTTGCTTCACCTAAGTAGGTTTTTTTCT 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5