BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05290.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939949 jgi|Araly1|939949|scaffold_600493.1 1234 0.0
Ahg495722 jgi|Araly1|495722|fgenesh2_kg.8__1538__AT5G56320.1 139 3e-32
> Ahg939949 jgi|Araly1|939949|scaffold_600493.1
Length=804
Score = 1234 bits (668), Expect = 0.0
Identities = 761/805 (95%), Gaps = 9/805 (1%)
Strand=Plus/Plus
Query 36 TCTTTAGCCCATCAGCAAATATCATGAATCTTACAGAATATTCCCATATTTTGTTTCTTT 95
|||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1 TCTTTAGCCCCTCAGCAAA-ATCATGAAGCTTACAGAATATTCCCATATTTTATTTCTTT 59
Query 96 CACTATGCACCCTCAACTTCTGCTTGTACTCCATAAACTCCGACGACAACGGAGGCTGGG 155
|||||| |||| ||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 60 CACTATTCACCATCAACTTCTAC----A-T-TATAAACTCCGACGACAACGGAGGCTGGG 113
Query 156 AGAGAGGCCATGCTACCTTCTATGGTGGAGCTGATGCATCCGGCACAATGGGTGGTGCTT 215
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 114 AGAGAGGCCATGCTACCTTCTACGGTGGAGATGATGCATCCGGCACAATGGGTGGTGCTT 173
Query 216 GTGGGTACGGTAACTTACACAGCCAAGGCTATGGGCTACAAACCGCGGCTTTGAGCACGG 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GTGGGTACGGTAACTTACACAGCCAAGGCTATGGGCTACAAACCGCGGCTTTGAGCACGG 233
Query 276 CTTTGTTCAATAGTGGGCAGAAATGTGGGGCCTGCTTTGAGCTACAGTGTGAGGATGATC 335
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 234 CTTTGTTCAATAGTGGGCAGAAATGTGGGGCCTGCTTTGAGCTACAATGTGAGGATGATC 293
Query 336 CTGAGTGGTGCATCCCTGGTTCCATCATCGTCTCGGCTACAAACTTCTGTCCTCCAAACT 395
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 294 CTGAGTGGTGCATCCCTGGTTCCATCATCGTCTCAGCTACAAACTTCTGTCCTCCAAACT 353
Query 396 TTGCCTTAGCTAATGATAATGGTGGTTGGTGCAATCCTCCTCTTAAGCACTTTGACTTGG 455
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 354 TTGCCTTAGCCAATGATAATGGTGGTTGGTGCAATCCTCCTCTCAAGCACTTTGACTTGG 413
Query 456 CCGAGCCTGCCTTCCTCCAGATCGCTCAGTACCGAGCTGGGATCGTTCCTGTCGCATTCA 515
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 414 CCGAGCCTGCCTTCCTCCAGATCGCTCAGTACCGGGCTGGAATCGTTCCTGTCGCATTCA 473
Query 516 GAAGGGTTCCATGTGAGAAAGGTGGAGGGATAAGGTTTACGATAAACGGGAATCCATATT 575
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 474 GAAGGGTTCCATGTGAGAAAGGTGGAGGGATAAGGTTCACGATCAACGGGAATCCGTATT 533
Query 576 TCGACCTCGTGCTAATCACGAATGTGGGTGGTGCTGGAGATATAAGGGCCGTCTCTTTGA 635
||||||||||| | ||||| || |||||||||||||||||| | ||||||||||||||||
Sbjct 534 TCGACCTCGTGTTGATCACAAACGTGGGTGGTGCTGGAGATGTTAGGGCCGTCTCTTTGA 593
Query 636 AAGGCTCAAAGACAGATCAGTGGCAATCCATGTCAAGAAACTGGGGACAGAATTGGCAAA 695
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AAGGCTCAAAGACTGATCAGTGGCAATCCATGTCAAGAAACTGGGGACAGAATTGGCAAA 653
Query 696 GCAACACTTACCTCAGAGGTCAAAGCCTTTCTTTCCAAGTCACTGATAGTGATGGTCGGA 755
||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||| ||
Sbjct 654 GCAACACTTACCTCAGAGGGCAAAGCCTATCTTTTCAAGTCACTGCTAGTGATGGTCAGA 713
Query 756 CTGTTGTGAGCTACGATGTTGTGCCTCATGATTGGCAGTTCGGTCAGACTTTTGAAGGCG 815
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 714 CTGTTGTGAGCTACGATGTTGTGCCTCAGGATTGGCAGTTCGGTCAAACTTTTGAAGGTG 773
Query 816 GACAATTTTAGATTTATG-ATCAAG 839
||||||| |||||| ||| | ||||
Sbjct 774 GACAATTCTAGATT-ATGTACCAAG 797
> Ahg495722 jgi|Araly1|495722|fgenesh2_kg.8__1538__AT5G56320.1
Length=1030
Score = 139 bits (75), Expect = 3e-32
Identities = 449/622 (72%), Gaps = 55/622 (9%)
Strand=Plus/Plus
Query 167 GCTACCTTCTATGGTGGAGCTGATGCATCCGGCACAATGGGTGGTGCTTGTGGGTACGGT 226
||||| |||||||| || |||||||| || ||||| ||||| || || ||||| |||||
Sbjct 168 GCTACATTCTATGGAGGTGCTGATGCTTCTGGCACCATGGGCGGCGCGTGTGGTTACGGG 227
Query 227 AACTTACACAGCCAAGGCTATGGGCTAC-AA-ACCGCGGCTTTGAGCACGGCTTTGTTCA 284
|||||| |||| |||||||| || || || || |||||| | ||||||||| | ||||
Sbjct 228 AACTTATACAGTCAAGGCTA-CGG-AACGAACACGGCGGCTCTAAGCACGGCTCTATTCA 285
Query 285 ATAGTGGGC-AGAAATGTGGGGCCTGCTTTGAGCTACAGTGTG-AGGATGATCCTGAGTG 342
| | || | || || || || || ||| || || | || | | | || || | ||
Sbjct 286 ACGGCGGCCAAG-GCTGCGGCGCTTGTTTTCAGATAAAATGCGTA-AACGACCCAAAATG 343
Query 343 GTG-CATCCCTGGTTCCATCATCGTC-TCGGCTACAAACTTCTGTCCTCCAAACTTTGCC 400
||| | ||| || | |||| |||| ||| |||||||| ||||| || ||||||| |
Sbjct 344 GTGTC-TCCGAGGAACAATCACCGTCACCGG-AACAAACTTTTGTCCACCCAACTTTG-C 400
Query 401 T-TAGCTAATGATAATGGTGGTTGGTGCAATCCTCCTCTTA-AGCACTTTGACTTGGC-C 457
| ||| || | || |||||||| |||||||||| | | ||||| || || || |
Sbjct 401 TCAAGCCAACAACGCCGGAGGTTGGTGTAATCCTCCTC-AACATCACTTCGATTTAGCTC 459
Query 458 GAGCCTGCCTTCCTCCAG-ATCGCTCAGTACCGAGCTGG-GATCGTTCCTGTCGC-AT-T 513
|||| |||||||| | |||||||| ||| ||| || | |||| || ||| | ||
Sbjct 460 -AGCCCATCTTCCTCC-GCATCGCTCAATACAAAGCCGGTG-TCGTCCCCGTC-CAATAC 515
Query 514 CAGA-AG-GG-TT-CCATGTGAGAAAGGTGGAGGGATAAGGTTTACGATAAACGG-GAAT 568
| || || || || || | |||||| ||||| ||||| || ||||| ||||| | |
Sbjct 516 CGGAGAGTGGCTTGCC--G-GAGAAA--AGGAGGAATAAGATTCACGATCAACGGTCACT 570
Query 569 CCATATTTCGACCTCGTGCTAATCACGAATGTGGGTGGTGCTGGAGATATAAG-GGCCGT 627
|||| ||| ||||||| || || || || || | || || |||||| | | ||||
Sbjct 571 -CATACTTCAACCTCGTACTCATAACCAACGTCGCCGGCGCCGGAGATGT-TGTCTCCGT 628
Query 628 CT-CTTTGAAAGGCTCAAAGACAGATCA-G-TGGCAATCCATGTCAAGAAACTGGGGACA 684
|| | || ||||| || |||| || | |||||| |||||||||||||||||||||
Sbjct 629 CTCCATT-AAAGG----AA-CCAGAACAGGTTGGCAAAGCATGTCAAGAAACTGGGGACA 682
Query 685 GAATTGGCAAAGCAACACTTACCTCAGA-GGTCAAAGCCTT-TC-TTTCCAAGTCACTGA 741
|||||||||||||||| | | || || |||||| || || || ||| |||| || |
Sbjct 683 GAATTGGCAAAGCAACTCAAATCTT-GATGGTCAA-GCTTTGTCCTTTA-AAGTAACA-A 738
Query 742 -TAGTGATGGTCGGACTGTTGT 762
||||||||| || || |||||
Sbjct 739 CTAGTGATGGCCGTACAGTTGT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5