BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05290.1 Length=978 Score E Sequences producing significant alignments: (Bits) Value Ahg939949 jgi|Araly1|939949|scaffold_600493.1 1234 0.0 Ahg495722 jgi|Araly1|495722|fgenesh2_kg.8__1538__AT5G56320.1 139 3e-32 > Ahg939949 jgi|Araly1|939949|scaffold_600493.1 Length=804 Score = 1234 bits (668), Expect = 0.0 Identities = 761/805 (95%), Gaps = 9/805 (1%) Strand=Plus/Plus Query 36 TCTTTAGCCCATCAGCAAATATCATGAATCTTACAGAATATTCCCATATTTTGTTTCTTT 95 |||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct 1 TCTTTAGCCCCTCAGCAAA-ATCATGAAGCTTACAGAATATTCCCATATTTTATTTCTTT 59 Query 96 CACTATGCACCCTCAACTTCTGCTTGTACTCCATAAACTCCGACGACAACGGAGGCTGGG 155 |||||| |||| ||||||||| | | | |||||||||||||||||||||||||||| Sbjct 60 CACTATTCACCATCAACTTCTAC----A-T-TATAAACTCCGACGACAACGGAGGCTGGG 113 Query 156 AGAGAGGCCATGCTACCTTCTATGGTGGAGCTGATGCATCCGGCACAATGGGTGGTGCTT 215 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 114 AGAGAGGCCATGCTACCTTCTACGGTGGAGATGATGCATCCGGCACAATGGGTGGTGCTT 173 Query 216 GTGGGTACGGTAACTTACACAGCCAAGGCTATGGGCTACAAACCGCGGCTTTGAGCACGG 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 GTGGGTACGGTAACTTACACAGCCAAGGCTATGGGCTACAAACCGCGGCTTTGAGCACGG 233 Query 276 CTTTGTTCAATAGTGGGCAGAAATGTGGGGCCTGCTTTGAGCTACAGTGTGAGGATGATC 335 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 234 CTTTGTTCAATAGTGGGCAGAAATGTGGGGCCTGCTTTGAGCTACAATGTGAGGATGATC 293 Query 336 CTGAGTGGTGCATCCCTGGTTCCATCATCGTCTCGGCTACAAACTTCTGTCCTCCAAACT 395 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 294 CTGAGTGGTGCATCCCTGGTTCCATCATCGTCTCAGCTACAAACTTCTGTCCTCCAAACT 353 Query 396 TTGCCTTAGCTAATGATAATGGTGGTTGGTGCAATCCTCCTCTTAAGCACTTTGACTTGG 455 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 354 TTGCCTTAGCCAATGATAATGGTGGTTGGTGCAATCCTCCTCTCAAGCACTTTGACTTGG 413 Query 456 CCGAGCCTGCCTTCCTCCAGATCGCTCAGTACCGAGCTGGGATCGTTCCTGTCGCATTCA 515 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 414 CCGAGCCTGCCTTCCTCCAGATCGCTCAGTACCGGGCTGGAATCGTTCCTGTCGCATTCA 473 Query 516 GAAGGGTTCCATGTGAGAAAGGTGGAGGGATAAGGTTTACGATAAACGGGAATCCATATT 575 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct 474 GAAGGGTTCCATGTGAGAAAGGTGGAGGGATAAGGTTCACGATCAACGGGAATCCGTATT 533 Query 576 TCGACCTCGTGCTAATCACGAATGTGGGTGGTGCTGGAGATATAAGGGCCGTCTCTTTGA 635 ||||||||||| | ||||| || |||||||||||||||||| | |||||||||||||||| Sbjct 534 TCGACCTCGTGTTGATCACAAACGTGGGTGGTGCTGGAGATGTTAGGGCCGTCTCTTTGA 593 Query 636 AAGGCTCAAAGACAGATCAGTGGCAATCCATGTCAAGAAACTGGGGACAGAATTGGCAAA 695 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 AAGGCTCAAAGACTGATCAGTGGCAATCCATGTCAAGAAACTGGGGACAGAATTGGCAAA 653 Query 696 GCAACACTTACCTCAGAGGTCAAAGCCTTTCTTTCCAAGTCACTGATAGTGATGGTCGGA 755 ||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||| || Sbjct 654 GCAACACTTACCTCAGAGGGCAAAGCCTATCTTTTCAAGTCACTGCTAGTGATGGTCAGA 713 Query 756 CTGTTGTGAGCTACGATGTTGTGCCTCATGATTGGCAGTTCGGTCAGACTTTTGAAGGCG 815 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 714 CTGTTGTGAGCTACGATGTTGTGCCTCAGGATTGGCAGTTCGGTCAAACTTTTGAAGGTG 773 Query 816 GACAATTTTAGATTTATG-ATCAAG 839 ||||||| |||||| ||| | |||| Sbjct 774 GACAATTCTAGATT-ATGTACCAAG 797 > Ahg495722 jgi|Araly1|495722|fgenesh2_kg.8__1538__AT5G56320.1 Length=1030 Score = 139 bits (75), Expect = 3e-32 Identities = 449/622 (72%), Gaps = 55/622 (9%) Strand=Plus/Plus Query 167 GCTACCTTCTATGGTGGAGCTGATGCATCCGGCACAATGGGTGGTGCTTGTGGGTACGGT 226 ||||| |||||||| || |||||||| || ||||| ||||| || || ||||| ||||| Sbjct 168 GCTACATTCTATGGAGGTGCTGATGCTTCTGGCACCATGGGCGGCGCGTGTGGTTACGGG 227 Query 227 AACTTACACAGCCAAGGCTATGGGCTAC-AA-ACCGCGGCTTTGAGCACGGCTTTGTTCA 284 |||||| |||| |||||||| || || || || |||||| | ||||||||| | |||| Sbjct 228 AACTTATACAGTCAAGGCTA-CGG-AACGAACACGGCGGCTCTAAGCACGGCTCTATTCA 285 Query 285 ATAGTGGGC-AGAAATGTGGGGCCTGCTTTGAGCTACAGTGTG-AGGATGATCCTGAGTG 342 | | || | || || || || || ||| || || | || | | | || || | || Sbjct 286 ACGGCGGCCAAG-GCTGCGGCGCTTGTTTTCAGATAAAATGCGTA-AACGACCCAAAATG 343 Query 343 GTG-CATCCCTGGTTCCATCATCGTC-TCGGCTACAAACTTCTGTCCTCCAAACTTTGCC 400 ||| | ||| || | |||| |||| ||| |||||||| ||||| || ||||||| | Sbjct 344 GTGTC-TCCGAGGAACAATCACCGTCACCGG-AACAAACTTTTGTCCACCCAACTTTG-C 400 Query 401 T-TAGCTAATGATAATGGTGGTTGGTGCAATCCTCCTCTTA-AGCACTTTGACTTGGC-C 457 | ||| || | || |||||||| |||||||||| | | ||||| || || || | Sbjct 401 TCAAGCCAACAACGCCGGAGGTTGGTGTAATCCTCCTC-AACATCACTTCGATTTAGCTC 459 Query 458 GAGCCTGCCTTCCTCCAG-ATCGCTCAGTACCGAGCTGG-GATCGTTCCTGTCGC-AT-T 513 |||| |||||||| | |||||||| ||| ||| || | |||| || ||| | || Sbjct 460 -AGCCCATCTTCCTCC-GCATCGCTCAATACAAAGCCGGTG-TCGTCCCCGTC-CAATAC 515 Query 514 CAGA-AG-GG-TT-CCATGTGAGAAAGGTGGAGGGATAAGGTTTACGATAAACGG-GAAT 568 | || || || || || | |||||| ||||| ||||| || ||||| ||||| | | Sbjct 516 CGGAGAGTGGCTTGCC--G-GAGAAA--AGGAGGAATAAGATTCACGATCAACGGTCACT 570 Query 569 CCATATTTCGACCTCGTGCTAATCACGAATGTGGGTGGTGCTGGAGATATAAG-GGCCGT 627 |||| ||| ||||||| || || || || || | || || |||||| | | |||| Sbjct 571 -CATACTTCAACCTCGTACTCATAACCAACGTCGCCGGCGCCGGAGATGT-TGTCTCCGT 628 Query 628 CT-CTTTGAAAGGCTCAAAGACAGATCA-G-TGGCAATCCATGTCAAGAAACTGGGGACA 684 || | || ||||| || |||| || | |||||| ||||||||||||||||||||| Sbjct 629 CTCCATT-AAAGG----AA-CCAGAACAGGTTGGCAAAGCATGTCAAGAAACTGGGGACA 682 Query 685 GAATTGGCAAAGCAACACTTACCTCAGA-GGTCAAAGCCTT-TC-TTTCCAAGTCACTGA 741 |||||||||||||||| | | || || |||||| || || || ||| |||| || | Sbjct 683 GAATTGGCAAAGCAACTCAAATCTT-GATGGTCAA-GCTTTGTCCTTTA-AAGTAACA-A 738 Query 742 -TAGTGATGGTCGGACTGTTGT 762 ||||||||| || || ||||| Sbjct 739 CTAGTGATGGCCGTACAGTTGT 760 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36331139901 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5