BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05300.1
Length=309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939950 jgi|Araly1|939950|scaffold_600494.1 327 2e-89
> Ahg939950 jgi|Araly1|939950|scaffold_600494.1
Length=322
Score = 327 bits (177), Expect = 2e-89
Identities = 269/308 (87%), Gaps = 27/308 (9%)
Strand=Plus/Plus
Query 1 ATGGCTAGAATTGGAGCTTTGATTCTAGTTTTATTCATCTCCATCTCTCAGCTTGCTTCG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 21 ATGGCTAGAATTGGAGCTTTGATTCTAGTTTTATTCATCTCCTTCTCTCAGCTTGCTTCG 80
Query 61 TTCTCAACAGCTAGGAAATTTCCGGTAGGAATTCCGTCGGTAATCGATGGCGTCATCTTC 120
|| ||||| ||||||||| | ||||||||||||| |||||||||||||||
Sbjct 81 TTTTCAACTGCTAGGAAA-------T-----TTCCGTCGGTAATTGATGGCGTCATCTTC 128
Query 121 TCCGGAGAGATCTCTGCTGTCTCCAAGAAGGTGACGGTGGTAGGGTGCGAAGGCGAGGAT 180
|||| |||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 129 CCCGGGGAGATCTCTGTTGTCTCC---AA---GACGGTGGTAGGGTGCGAAGGCGAGGAT 182
Query 181 GATCACTTGACGGCTGGATATTCGTCGTATATCACCGGAAAATTTGGGTCGTTGGTGTTG 240
|||||||| | | || |||||||| || ||||||||||||||||||||||||||
Sbjct 183 GATCACTT--C-AC-GG-----CGTCGTATGTCTCCGGAAAATTTGGGTCGTTGGTGTTG 233
Query 241 AACGCTCTTCCAAAAGGGTCAGTTCCGGCGTCTGGACCCAGCAAGAGAATCAACGACGTC 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AACGCTCTTCCGAGAGGGTCAGTTCCGGCGTCTGGACCCAGCAAGAGAATCAACGACGTC 293
Query 301 AAGACTTA 308
||||||||
Sbjct 294 AAGACTTA 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10874342865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5