BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05310.3
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487324 jgi|Araly1|487324|fgenesh2_kg.6__458__AT5G05310.2 2342 0.0
> Ahg487324 jgi|Araly1|487324|fgenesh2_kg.6__458__AT5G05310.2
Length=1581
Score = 2342 bits (1268), Expect = 0.0
Identities = 1414/1484 (95%), Gaps = 11/1484 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGCCAGAATTCGATTAGATGCGGTAATATCCACGATAGTAACGGTGCACCCGCAC 60
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 67 ATGGCAGGCAGAATTCGATTAGATGCGGTTATCTCCACGATAGTAACGGTGCACCCGCAC 126
Query 61 GAGCTTCCGGCGTTGCTCCACTCCTCTTCCTGCTTCTTCTTCATATTGAGCGCGTATTTC 120
||| ||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 127 GAGATTCCGGCGTTGCTACACTCATCTTCCTGCTTCTTCTTCGTATTGAGTGCGTATTTC 186
Query 121 GTAGTTCTTCCACTCCGCGACGAAGGAGCAATATCGCTGGGATTATCAAAGCTACCAGGC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 187 GTAGTTCTTCCACTCCGCGATGAAGGAGCAATATCGCTGGGATTATCAAAGCTCCCAGGC 246
Query 181 CTTTTCGTTGGATCATTGTTTCTCACTCTCATTGCTGCTCCTCTTTCCACCTTCATCTTC 240
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CTTTTCGTCGGATCCTTATTTCTCACTCTCATTGCTGCTCCTCTTTCCACCTTCATCTTC 306
Query 241 TCTTTGCCCAATTTGTCCAAATCCAAGGCTTTGGTTATAATTCATAGATTCTTTAGTCTA 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 307 TCTTTGCCCAATTTGTCCAAATCCAAGGCTTTGGTTATAATACATAGATTCTTTAGTCTA 366
Query 301 TCACTTGTTCTATGTTTCCTTCTTTGGATGGCCTCCCCGACAGAGTCTAATTCAAAGGAT 360
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 367 TCACTTGTTCTATGTTTCCTTCTTTGGATGGCCTCCCCAACAGAGTCTACTTCAAAGGAT 426
Query 361 GCAGTTGAGGCGGCTTCCGGCCTTACAAATGATGG-AGCTAATGCTGCTACTGGATGGGA 419
|||||||| ||||| ||| |||| ||||| | ||| | | | || |||| |||||||||
Sbjct 427 GCAGTTGAAGCGGCATCCAGCCTAACAAAAGTTGGTATCGA-TGGAGCTAATGGATGGGA 485
Query 420 CAACCATGGCTGGTTTTACATTTCTGTCCGGGTTGGATTTTTCCTTTGGGTTGCGTTGCT 479
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 486 CAACCATGGCTGGTTTTACATTTCTGTTCGAGTTGGATTTTTCCTTTGGGTTGCGTTGCT 545
Query 480 TAATCTTGTCGCTATTTCTTCAACGTGGGCTAGAATAATAGACGTTATGGATATTCAGTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 546 TAATCTTGTCGCTATTTCTTCAACGTGGGCTAGAATAATAGACGTTATGGATAGTGAGTC 605
Query 540 AGGTGCAAGATTGTTTGGTTTTGTTGGTGCTGGTGCTACCCTTGGACAGCTTTTTGGATC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AGGTGCAAGATTGTTTGGTTTTGTTGGTGCTGGTGCTACCCTTGGACAGCTTTTTGGATC 665
Query 600 TGTATTTGCTGCTGCCACTGCTTGGATGGGTCCATATTTACTTCTATTTGCTGCTCTTTT 659
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 666 AGTATTTGCTGCTGCCACTGCTTGGATGGGTCCATATCTACTTCTATTTGCTGCTCTTTT 725
Query 660 GATGGAATTTGCTGCACAGTCTTCAAAAGGGATCACTAATGATATTTCCCAGTCCTCTGA 719
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 726 GATGGAATTTGCTGCACAGGCTTCAAAAGGGATCACCAATGATATTTCCCAGTCCTCTGA 785
Query 720 GGAGTTGTCTCCTCTAAGGGGAACTGATAATGATCATCAACGTGAGAGAAAACAGGAGGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 786 GGAGTTGTCTCCTCTAAGGGGAACTGATAATGATCATCAACGTGAGAGAAAACAGGAAGC 845
Query 780 TACTTCTCCAAAAGTTGGTTCTCCAAAAGTTGCTTCTCCTAAATCGCCCATCTCCACAAC 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 846 TACTTCTCCAAAAGTTGGTTCTCCAAAAGTTGCTTCTCCTAAATCGCCTATCTCCACAAC 905
Query 840 CAGACCTCAGTTTTGGGCCATCTTAGATGGAATGAGACTTATACTAGCATCACCTTATCT 899
|||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 906 CAGACCTCAGCTTTGGGCCATCTTCGATGGCATGAGACTTATACTAGCATCGCCTTATCT 965
Query 900 TTTGCTCGTGTCTTTGTTTCTTTGGCTCGGTGCGGTCATCTCCTCATTCTTCTATTTCCA 959
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 966 TTTGCTAGTGTCTTTGTTCCTCTGGCTCGGTGCGGTCATCTCCTCATTCTTCTATTTCCA 1025
Query 960 AAAAGTGAATATAATTGCTACGACAATCAAATCATCCATTGGTCGAAGAAGACTGTTTGC 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AAAAGTGAATATAATTGCCACGACAATCAAATCATCCATTGGTCGAAGAAGACTGTTTGC 1085
Query 1020 CCAGATAAACAGCTTTGTTGCAGTTTTCATACTCATTGGACAACTGACTTTAACGG---G 1076
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1086 CCAGATAAATAGCTTCGTTGCAGTTTTCATACTCATTGGACAACTGACTTTAACGGTATG 1145
Query 1077 ------GCGTATCTTGACTGTAGCTGGTGTCACGGTTGCAATATCTGCATCTCCATTTGT 1130
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TCATATGCGAATCTTGACTGTAGCTGGTGTCACGGTTGCAATATCTGCATCTCCATTTGT 1205
Query 1131 TGCACTTGGGAATTTGGTTGCTATTGCCATATGGCCAACTTGGGTTACGGTTGCTGTGTC 1190
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1206 TGCACTTGGGAATTTGGTTGCTATTGCCATATGGCCAACTTGGGTTACAGTTGCTGTATC 1265
Query 1191 TGAAACCCTGAGAAAGGTGACAACTTATGTTGTAACTAGACCTGGAAGGGAACTCTTGTT 1250
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TGAAACCTTGAGAAAGGTGACAACTTATGTTGTAACTAGACCTGGAAGGGAACTCTTGTT 1325
Query 1251 CACCGTTGTCTCGCAAGACGAGAAATACAAAGCTAAGGTATGCATAGATGTAATTGTTCA 1310
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1326 CACAGTTGTCTCGCAAGACGAGAAATACAAAGCTAAGGTATGCATAGATGTGATTGTTCA 1385
Query 1311 ACGGCTTGGAGATGCTGCAGCGGCGGGACTATTTGAAGTCCTTACCATTGCTCTTGGCGG 1370
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1386 ACGGCTTGGAGATGCTGCAGCGGCGGGACTATTTGAAGTCCTGACCATTGCTCTTGGCGG 1445
Query 1371 TCAAACGTCAACTGCTTCACTCTATGCCCTGCCAGTGTGTTTAATATGGATAGTCACAGC 1430
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1446 TCAAACATCAACTGCTTCACTCTATGCCTTGCCAGTGTGTTTAATATGGATAGTCACGGC 1505
Query 1431 GTTCTTCTTGGGCCGGCGACAAGAACAATTGGCGAAACTCCAGG 1474
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1506 ATTCTTCTTGGGACGGCGACAAGAACAATTGGCGAAACTCCAGG 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62125189595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5