BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05330.1 Length=974 Score E Sequences producing significant alignments: (Bits) Value Ahg892457 jgi|Araly1|892457|Al_scaffold_0006_453 865 0.0 > Ahg892457 jgi|Araly1|892457|Al_scaffold_0006_453 Length=567 Score = 865 bits (468), Expect = 0.0 Identities = 536/569 (94%), Gaps = 4/569 (1%) Strand=Plus/Plus Query 101 ATGGCAATTCGGCCGAGAACTCGTAAAAGAGTTCAAGCTGTTCGTCGTGCTGCCGATGGT 160 ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| Sbjct 1 ATGGCGATTCGGCCGAGAACTCGTAAAAGGGTTCAAGCAGTTCGTCGTGCTGCTGATGGA 60 Query 161 AGCGCTTTTAAAAAATGTGAAGAATGTGGTGTTATGATAGCGATTGCTCTGTATGATATG 220 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 AGCGCTTTTAAGAAATGTGAAGAATGTGGTGTTATGATAGCGATTGCTCTGTTTGATATG 120 Query 221 CATGAGTGCGGTGAGAAAAGAAGGGAAGTGAAAAGGTTCAAGTACATTGCGAGTGGCAAT 280 ||||||||||||||||| |||||||||||||| || ||||||||| |||| ||||||||| Sbjct 121 CATGAGTGCGGTGAGAAGAGAAGGGAAGTGAAGAGATTCAAGTACGTTGCCAGTGGCAAT 180 Query 281 ATCGA-TAATATCTCGAAACCAATTGGGAGCTTTGAAGATGAACCCAGATCACCATTTGT 339 || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTC-ATTAATATCTCGAAACCAATTGGGAGCTTTGAAGATGAACCCAGATCACCATTTGT 239 Query 340 CTTCTTCTTAGAGGAGTTTAGGGAAAATTACAATGGAGACTTAGTGGATGCTAGCAGAAT 399 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 240 CTTCTTCTTAGAGGATTTTAGGGAAAAGTACAATGGAGACTTAGTGGATGCTAGCAGAAT 299 Query 400 ATGTTTCAATGTATGGAAGAACATGTCAGCAGAGGACCAAAAACCATTCAACGCCCGTGC 459 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 300 ATGTTTCAATGTATGGAAGAACATGTCACCAGAGGACCAAAAACCATTCAACGCCCGTGC 359 Query 460 TATGGAGGTTGATTCGGCACACAGTAGAAAGTTAAACGAAGAAGCTAAAACCATTTATAA 519 |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||| Sbjct 360 TATGGAGGTTGATTTGGCACACAGCAGAAAGTTAAACGAAGAAGCTAAAACTATTGATAA 419 Query 520 GGCAGATGAAGAGGCAGATTCAAAAACTGTTGGGAGATATGACAAGTTCTATGAGAGCTA 579 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 GGCAGATGATGAGGCAGATTCGAAAACTGTTGGGAGATATGACAAGTTCTATGAGAGCTA 479 Query 580 CGTTCAA-ATTGAAGAAGAGGAAGACTATGATTCATCTGATCATTTCGGACACGAGTTTT 638 |||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct 480 CGTTCATTAT-GAAGAAGAGGAGGACTATGATTCATCTGATCATTTTGGACATGAGTTTT 538 Query 639 GGGAAGACGATACTATGTTGGACTACTGA 667 |||||||||||||| || | ||||||||| Sbjct 539 GGGAAGACGATACTCTGCTCGACTACTGA 567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36178648233 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5