BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05330.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892457 jgi|Araly1|892457|Al_scaffold_0006_453 865 0.0
> Ahg892457 jgi|Araly1|892457|Al_scaffold_0006_453
Length=567
Score = 865 bits (468), Expect = 0.0
Identities = 536/569 (94%), Gaps = 4/569 (1%)
Strand=Plus/Plus
Query 101 ATGGCAATTCGGCCGAGAACTCGTAAAAGAGTTCAAGCTGTTCGTCGTGCTGCCGATGGT 160
||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1 ATGGCGATTCGGCCGAGAACTCGTAAAAGGGTTCAAGCAGTTCGTCGTGCTGCTGATGGA 60
Query 161 AGCGCTTTTAAAAAATGTGAAGAATGTGGTGTTATGATAGCGATTGCTCTGTATGATATG 220
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AGCGCTTTTAAGAAATGTGAAGAATGTGGTGTTATGATAGCGATTGCTCTGTTTGATATG 120
Query 221 CATGAGTGCGGTGAGAAAAGAAGGGAAGTGAAAAGGTTCAAGTACATTGCGAGTGGCAAT 280
||||||||||||||||| |||||||||||||| || ||||||||| |||| |||||||||
Sbjct 121 CATGAGTGCGGTGAGAAGAGAAGGGAAGTGAAGAGATTCAAGTACGTTGCCAGTGGCAAT 180
Query 281 ATCGA-TAATATCTCGAAACCAATTGGGAGCTTTGAAGATGAACCCAGATCACCATTTGT 339
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTC-ATTAATATCTCGAAACCAATTGGGAGCTTTGAAGATGAACCCAGATCACCATTTGT 239
Query 340 CTTCTTCTTAGAGGAGTTTAGGGAAAATTACAATGGAGACTTAGTGGATGCTAGCAGAAT 399
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 CTTCTTCTTAGAGGATTTTAGGGAAAAGTACAATGGAGACTTAGTGGATGCTAGCAGAAT 299
Query 400 ATGTTTCAATGTATGGAAGAACATGTCAGCAGAGGACCAAAAACCATTCAACGCCCGTGC 459
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 ATGTTTCAATGTATGGAAGAACATGTCACCAGAGGACCAAAAACCATTCAACGCCCGTGC 359
Query 460 TATGGAGGTTGATTCGGCACACAGTAGAAAGTTAAACGAAGAAGCTAAAACCATTTATAA 519
|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 360 TATGGAGGTTGATTTGGCACACAGCAGAAAGTTAAACGAAGAAGCTAAAACTATTGATAA 419
Query 520 GGCAGATGAAGAGGCAGATTCAAAAACTGTTGGGAGATATGACAAGTTCTATGAGAGCTA 579
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCAGATGATGAGGCAGATTCGAAAACTGTTGGGAGATATGACAAGTTCTATGAGAGCTA 479
Query 580 CGTTCAA-ATTGAAGAAGAGGAAGACTATGATTCATCTGATCATTTCGGACACGAGTTTT 638
|||||| || ||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 480 CGTTCATTAT-GAAGAAGAGGAGGACTATGATTCATCTGATCATTTTGGACATGAGTTTT 538
Query 639 GGGAAGACGATACTATGTTGGACTACTGA 667
|||||||||||||| || | |||||||||
Sbjct 539 GGGAAGACGATACTCTGCTCGACTACTGA 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5