BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05340.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939957 jgi|Araly1|939957|scaffold_600501.1 1659 0.0
> Ahg939957 jgi|Araly1|939957|scaffold_600501.1
Length=1019
Score = 1659 bits (898), Expect = 0.0
Identities = 979/1019 (96%), Gaps = 1/1019 (0%)
Strand=Plus/Plus
Query 33 TCAAGTCTTTGTTTTAACCTAACAATGGCTTCAAATAAACTTATTTCGATTCTAGTTCTC 92
|||||||||||||||||||| ||||||||||||||| |||||| | | ||||||||||||
Sbjct 1 TCAAGTCTTTGTTTTAACCT-ACAATGGCTTCAAATCAACTTACTGCCATTCTAGTTCTC 59
Query 93 GTAGTTACACTTTTACTCCAAGGTGATAACAATTACGTCGTCGAAGCACAACTCACGACT 152
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 60 GTACTTACACTTTTACTCCAAGGTAATAACAATAACGTCGTCGAAGCACAACTCACTACT 119
Query 153 AACTTCTACTCAACCTCTTGCCCCAACCTCCTCTCCACCGTCCAAACCGCCGTTAAATCT 212
|| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 120 AATTTCTACTCAACCTCTTGCCCTAACCTCCTCTCCACCGTCCAAAGCGCCGTTAAATCT 179
Query 213 GCCGTTAACAGCGAGGCTCGAATGGGTGCATCTATCCTCCGTCTCTTCTTCCACGATTGC 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCCGTTAACAGCGAGGCTCGAATGGGTGCATCTATCCTCCGTCTCTTCTTCCACGATTGC 239
Query 273 TTTGTCAACGGATGCGACGGTTCGATTCTACTAGACGATACGTCAAGCTTCACAGGAGAA 332
|| ||||||||||| |||||||||||||| |||| || ||||| |||||||| ||||||
Sbjct 240 TTCGTCAACGGATGTGACGGTTCGATTCTGTTAGATGACACGTCGAGCTTCACTGGAGAA 299
Query 333 CAAAACGCGGCTCCAAACCGCAATTCAGCTCGTGGGTTTAATGTGATCGACAACATCAAA 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAAACGCGGCTCCAAACCGCAATTCAGCTCGTGGGTTTAATGTGATCGACAACATCAAA 359
Query 393 TCAGCGGTTGAGAAAGCATGTCCCGGGGTTGTGTCTTGTGCTGATATCTTAGCCATTGCT 452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCAGCGGTTGAGAAAGCATGTCCCGGGGTTGTGTCTTGTGCTGATATCTTAGCCATTGCA 419
Query 453 GCTAGAGACTCCGTCGTAGCCCTTGGAGGACCGAACTGGAATGTGAAAGTAGGAAGAAGA 512
||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 420 GCTAGAGACTCCGTCGTAGTACTTGGAGGGCCGAATTGGAATGTGAAAGTAGGAAGAAGA 479
Query 513 GATGCAAGAACGGCGAGTCAAGCGGCAGCGAATAGTAACATTCCGGCACCGACTTCGAGT 572
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GATGCAAGAACGGCGAGTCAAGCGGCAGCGAATAGTAACATTCCGGCGCCGACTTCGAGT 539
Query 573 CTGAGCCAACTCATTAGTAGTTTCAGTGCTGTTGGACTCTCCACCAGAGATATGGTTGCT 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTGAGCCAACTCATTAGTAGTTTCAGTGCTGTTGGACTCTCCACCAGAGATATGGTTGCT 599
Query 633 CTCTCTGGCGCACACACGATCGGACAATCCCGTTGCACGAACTTCCGAGCGAGAATCTAC 692
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTCTCCGGCGCACACACGATCGGACAATCCCGTTGCACGAACTTCCGAGCGAGAATCTAC 659
Query 693 AACGAGACAAACATCAATGCCGCCTTCGCCACGACACGTCAACGAACTTGCCCTAGAGCC 752
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 AACGAGACAAACATCAACGCCGCCTTCGCCACCACACGTCAACGAACTTGCCCTAGAGCC 719
Query 753 TCCGGTTCCGGCGACGGAAACCTAGCTCCACTAGACGTCACCACGGCAGCTTCTTTCGAC 812
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 720 ACCGGTTCCGGCGACGGAAACCTAGCTCCACTAGACGTCACCACGGCTGCCTCTTTCGAC 779
Query 813 AACAACTACTTCAAGAATCTCATGACTCAGAGAGGGCTCCTCCATTCCGACCAAGTGCTC 872
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 AACAACTACTTCAAGAATCTCATGACTCAGAGAGGTCTCCTCCATTCCGACCAAGTGCTC 839
Query 873 TTCAACGGCGGCTCTACTGACTCCATCGTCCGTGGATACAGCAACAATCCGTCGAGCTTT 932
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 TTCAACGGCGGCTCCACTGACTCTATCGTCCGTGGATACAGCAACAATCCGTCGAGCTTT 899
Query 933 AACTCTGACTTCACGGCGGCGATGATAAAAATGGGTGATATCAGCCCGTTGACTGGTAGT 992
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AACTCCGACTTCGCGGCGGCGATGATAAAAATGGGTGATATCAGCCCGTTGACTGGTAGT 959
Query 993 AGCGGTGAAATCCGCAAGGTTTGCGGGAGGACCAACTGATTCAAGTCTACTCCACGTGT 1051
|||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 960 AGCGGTGAGATCCGCAAGGTTTGCGGGAGGACCAACTGATTCAAATCTCCTCCACGTGT 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5