BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05350.1
Length=2221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487328 jgi|Araly1|487328|fgenesh2_kg.6__462__AT5G05350.1 2702 0.0
Ahg478442 jgi|Araly1|478442|fgenesh2_kg.3__1143__AT3G10980.1 593 1e-168
> Ahg487328 jgi|Araly1|487328|fgenesh2_kg.6__462__AT5G05350.1
Length=1966
Score = 2702 bits (1463), Expect = 0.0
Identities = 1773/1914 (93%), Gaps = 55/1914 (3%)
Strand=Plus/Plus
Query 147 AGTGTAATTCTCCTCTGAAATTCAGCCTTAGTTCGTCTCTTTCGTTCTGGGTTTCTCTGT 206
||||||||||||| ||| |||||| | |||||||||||||||| |||||||||||||
Sbjct 85 AGTGTAATTCTCCACTG-AATTCAACTTTAGTTCGTCTCTTTCCTTCTGGGTTTCTC--- 140
Query 207 AATTGTAGCCCAATTCCAATCCTGGGCATGTATTTCAAAG-TGTTTCCATCTTCTTTTGT 265
| | |||||||||| ||||||||||| ||| ||| | |||| ||||||||||||
Sbjct 141 -----T-G--CAATTCCAATTCTGGGCATGTAATTCGAAGATTTTTCAATCTTCTTTTGT 192
Query 266 CAAAGTTGAAGACTTTGCTCGTTTTGAATCCGTCCGCTAGTAGAATCTTCTTCTTTGAAT 325
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CAAAGTTGAAGACTTTGTTCGTTTTGAATCCGTCCGCTAGTAGAATCTTCTTCTTTGAAT 252
Query 326 CGATTTTGATATCTCTGCTTTATGGGTTTCCACACTTTTGCCAGCAATGTCTAAGCTTCC 385
|| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 253 CG-CTTTCATATCTCTGCTTTACGGGTTTTCACACTTTTGCCAGCAATGTCTAAGCTTCC 311
Query 386 AAGAACATGCCTTTGACTAGA-TTTTCCCGGTAAAGctttttgcttttacttcttttttC 444
||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 312 AAGCACATGCCTTTGACTA-ACTTTTCCCGGTAAAG-GATTTGCTTTTACTTCTTTTTTC 369
Query 445 CTGGCACGAGAAATTAATGGGTTCAGTTGATGAGGTTGAGATATCTAAGACTAGGGTTTC 504
|||||||||| || |||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 370 CTGGCACGAG-AA--AATGGGCTCAACTGATGAGGTTGAGAAATCTAAGACTAGGGTTTC 426
Query 505 ATGTCCTCCTGCTCTCTCAACATCTCATAAGATTCTCATCAGTGAAGAGAAACCTAGGAG 564
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 427 ATGTCCTCCTGCTCTCTCAACATCTCATAAGATTCTTATCAGTGAAGAGAAACCTAGGAG 486
Query 565 ATGGTCCGAGAGTTCGTTGCCTGATGTCTCTAATAGGATTAAGCTTTTGAAATTTGGTTC 624
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATGGTCGGAGAGTTCGTTGCCTGATGTCTCTAATAGGATTAAGCTTTTGAAATTTGGTTC 546
Query 625 CCCTTCTGCTAGACTCAAGAGAATGGCTGAGGAAAGAGATGAAGTTTCACGCTCTGTCAA 684
| ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 547 CGCTTCTGCTAGATTCAAGAGAATGGCAGAGGAAAGAGATGAGGTTTCACGCTCTGTTAA 606
Query 685 CAGCTC-A--AG-CTC---TAGCAGCCACG----A-TGTGGTGTCTTCCCGGAAAATCGA 732
|||||| | || | | | ||| | | | |||||||| |||||||||||| ||
Sbjct 607 CAGCTCAAGCAGCCACAATTTCCAGGAAAGAATCAGTGTGGTGTTTTCCCGGAAAATTGA 666
Query 733 GTGGGCTTGTTTGATGAAAATGGGTAAGCAATGGCTACAGAACCCGTTGAACATGGTTAT 792
||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 667 GTGAGCTTGCTTGATGAAAATGGGTAAGCAATGGCTACAAAACCCGTTGAACATGGTTCT 726
Query 793 GTTT-TTGTGGAT-CTTTGTGGTTGCTGTCTCCGGTGCGATTCTATTCATGGTTATGACT 850
||| |||||||| | |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 727 -TTTCTTGTGGATAC-TTGTGGTTGCTGTCTCTGGTGCGATTCTGTTCATGGTTATGACC 784
Query 851 GGTATGTTGAACCATGCTTTGCCCAAGAAATCACAGAGAGATGTCTGGTTTGAAGTTAAC 910
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 785 GGCATGTTGAACCATGCTTTGCCCAAGAAATCACAGAGAGATGTTTGGTTTGAAGTTAAC 844
Query 911 AACCAAATCCTCAACGCAT-TGTTTACTCTGATGTGTCTGTATCAACACCCGAAACGGTT 969
|| |||||||||||||| | |||||||||| |||||| ||||||||||||||||||||||
Sbjct 845 AATCAAATCCTCAACGC-TATGTTTACTCTCATGTGTTTGTATCAACACCCGAAACGGTT 903
Query 970 TTACCACCTTGTGCTTCTCTGTAGATGGAAGCAAGACGATGTTACAACGCTTAGGAAGAT 1029
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 904 TTACCACCTTGTGCTTCTCTGTAGATGGAGGCAAGACGATGTTACAACGCTTAGGAAGAT 963
Query 1030 ATT-CTGCAAGAACGGGACTTACAAGCCAAACGAATGGATACACATGATGGTTGTTGTTC 1088
|| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 964 -TTACTGCGAGAACGGGACTTACAAGCCAAACGAATGGATCCACATGATGGTTGTTGTTC 1022
Query 1089 TTTTGCTTCACTTGAACTGTTTTGCTCAGTATGCGCTTTGCGGTCTTAACTTAGGCTATA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TTTTGCTTCACTTGAACTGTTTTGCTCAGTATGCGCTTTGCGGTCTTAACTTAGGCTATA 1082
Query 1149 GAAGATCCGAGAGACCTGCCATTGGTGTAGCTATATGTATATCTTTTGCAATAGCAGCTC 1208
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1083 GAAGATCCGAGAGACCTGCAATTGGTGTAGCTATATGTATATCTATTGCAATAGCAGCTC 1142
Query 1209 CTACG-GCTGCGGGTTTGTACACTATTCTTAGTCCACTTGGGAAAGATTATGATCCTCAA 1267
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CTGCGAG-TGCGGGTTTGTACACTATTCTTAGTCCACTTGGGAAAGATTATGATCCTCAA 1201
Query 1268 GGAGATGAGGAGAATCAAGTGCAGGCTGTGGGAGAAGGA-CCGGTTAGTAATCGCAAGTT 1326
||||||||||||||||||||| || |||||| ||||||| ||| ||| ||||| ||||||
Sbjct 1202 GGAGATGAGGAGAATCAAGTGGAGCCTGTGGAAGAAGGATCCG-TTACTAATCACAAGTT 1260
Query 1327 ATCTCTTGAAAGGAGATATTCATTTGCTTCTA-ATGATGTGAGTAATCCTGAATGGAGAG 1385
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1261 ATCTCTTGAAAGGAGATATTCATTTGCTTCTGCA-GATGTGAGTAATCCTGAATGGAGAG 1319
Query 1386 AG-GGAGTTCTTGACATATGGGAAGATATTTCATTGGCTTATCTCTCTCTGTTCTGCACT 1444
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 -GTGGAGTTCTTGATATATGGGAAGATATTTCATTGGCTTATCTCTCTCTGTTCTGCACT 1378
Query 1445 TTTTGTTTGTTTGGTTGGAACATGGAGAGGATTGGGTTTGGGAATATGTATGTGCACATT 1504
|| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1379 TTCTGTGTGTTTGGTTGGAACATGGAGAGGATTGGGTTTGGGAACATGTATGTGCACATT 1438
Query 1505 GCGACTTTTGTTCTCTTCTGTTTAGCTCCTTTCTTTATATTCAACTTGGCTGCTATAAAC 1564
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1439 GCGACTTTTATTCTCTTCTGTTTGGCTCCTTTCTTTATATTCAACTTGGCTGCTATAAAC 1498
Query 1565 ATTGATAACGAGATGGTAAGGGATGCACTTGGATATACTGGGATTGTGCTTTGCTTGTTT 1624
|| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1499 ATCGATAACGAGATGGTAAGGGAAGCACTTGGATATACCGGAATTGTGCTTTGCTTGTTT 1558
Query 1625 GGTTTGCTCTATGGTGGTTTTTGGAGAATACAGATGAGGAAAAGATTCAAGTTGCCGGGC 1684
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1559 GGTTTGCTCTATGGTGGTTTTTGGAGAATGCAGATGAGGAAAAGATTCAAGTTGCCGGGC 1618
Query 1685 TATAACATCTGTTGCGGGAGACCCGCGATTGCTGATTGTACACTCTGGTTGTTCTGTTGT 1744
|||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1619 TATAACTTCTGTTGCAGGAGACCTGCGATTGCTGATTGTACACTCTGGTTATTCTGTTGC 1678
Query 1745 TGGTGCTCTTTAGCTCAAGAAGTCCGGACCGCGAATTCTTATGAAATAGTGGAGGATAAA 1804
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1679 TGGTGCTCTTTAGCTCAAGAAGTCCGGACCGCCAATTCTTATGAAATAGTGGAGGATAAA 1738
Query 1805 TTTTGCAAAAGAAGAGAAGAAAATAGTAAGATTGATGATGAGGTTGTCGTATCTGCATTG 1864
|| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1739 TTCTGCAAAAGAAGTGAAGAAAATAGTAAGATTGATGATGAGGTTGTGGTATCTTCATTA 1798
Query 1865 CCTCGTGAAGACGGTGTGTTTGATCCGAGTTGCTTGCCTAAGAAGATGACCACGACGATG 1924
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1799 CCTCGTGAAGACGGTGTGTTTGATCCGAGTTGCTCGCCTAAGAAGATGACCACGGCGAT- 1857
Query 1925 ATAGCTAGCTC-TACTCTTAGCCCGAGCAGACAGAAAGATGAAACTTGCTTGGGAGAGAA 1983
| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1858 A--GCTAGCTCGT-CTCTTAGCCCGAGCAGACAGAAAGATGAAACTTGCTTGGGAGATAA 1914
Query 1984 AGGTGATGAAGCTCTAAGTCCACCTTCTCCTCCATTCATACACAGAGAAGCTAG 2037
| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1915 AAGTGATGAAGCTCTAAGTCCACCTTCTCCTCCATTCATACACAGA-A-GCTAG 1966
> Ahg478442 jgi|Araly1|478442|fgenesh2_kg.3__1143__AT3G10980.1
Length=2050
Score = 593 bits (321), Expect = 1e-168
Identities = 725/910 (80%), Gaps = 68/910 (7%)
Strand=Plus/Plus
Query 494 ACTAGGGTT--T-CATGTCCTCCTGCTCTCTCAACATCTCATAAG-A-TTCTCATCAGTG 548
||||||||| | | ||||||| || | | || |||||| | ||| | || | || |||
Sbjct 428 ACTAGGGTTCCTCCTTGTCCTCTTGATGTTTCTACATCT-AGAAGAACTT-TGATTGGTG 485
Query 549 AAGAG-AAACCTAGGAGATGGTCCGA-GAGTTCGTTGCCTGATGTC-TCTAATAGGATTA 605
| | | |||||||||||||||| | | ||| | |||||||||| | |||| ||| ||
Sbjct 486 ATG-GTAAACCTAGGAGATGGT-CTATTAGTGCTTTGCCTGATG-CTTCTAGTAGAATCC 542
Query 606 AGCTTTTGAAATTTGGTTCCCCTTCTGCTAGACTCAAGAGAATGGCTGAGGAAAGAGATG 665
||||| ||||||||||||| |||||||||| | |||||| |||||||||||| ||||| |
Sbjct 543 AGCTTCTGAAATTTGGTTCTCCTTCTGCTAAATTCAAGAAAATGGCTGAGGATAGAGACG 602
Query 666 AAGTTTCACGCTCTGTCAACAGCTC----A-----AGC--TC-T-A--GCA-GCCACG-A 708
| ||||| || || || || ||||| | ||| || | | || | | | |
Sbjct 603 AGGTTTCGCGGTCAGTGAAGAGCTCAAGTAGCGGCAGCAGTCATAATTTCAGGGAAAGAA 662
Query 709 T--GTGGTGT-CTTC-CCGGAAAATCGAGTGG-GCTTGTTTGATGAAAAT-GGGTAAGCA 762
| ||||||| |||| |||||| ||||| ||| | || | |||||||||| ||| ||| |
Sbjct 663 TCAGTGGTGTGCTTCACCGGAATATCGATTGGAG-TTCTCTGATGAAAATGGGGAAAG-A 720
Query 763 ATGG-CTACAGAA-CCCGTTGAACATGGTTATGTTTTTGTGGAT-CTTTGTGGTTGCTGT 819
|||| || ||| || || ||||||| | | ||| ||||||| | |||| ||||| ||
Sbjct 721 ATGGATTA-GGAATCCTATT-AACATGGCTCTCTTTGTGTGGATAC-TTGTTGTTGCAGT 777
Query 820 CTCCGGTGCGATTCTATTCATGGTTATGACTGGTATGTTGAACCATGCTTTGCCCAAGAA 879
||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 778 CTCTGGTGCTATTCTCTTCATGGTTATGACTGGTATGTTGAATCATGCTTTGCCTAAGAA 837
Query 880 ATCACAGAGAGATGTCT-GGTTTGAAGTTAACAACCAAATCCTCAACGCATTGTTTACTC 938
||||||||||||| || |||||||||||||||| || ||||| || | |||||||||
Sbjct 838 GTCACAGAGAGATG-CTTGGTTTGAAGTTAACAATCAGATCCTTAATGGGTTGTTTACTT 896
Query 939 TGATGTGTCTGTATCAACACCCGAAACGGTTTTACCACCTTG-TGCTTCTCTGTAGATGG 997
|||||||||| |||||||| |||||||||||||| ||| ||| ||||||| |||||||||
Sbjct 897 TGATGTGTCTTTATCAACATCCGAAACGGTTTTATCAC-TTGGTGCTTCTTTGTAGATGG 955
Query 998 AAGCAAGACGATGTTACAACGCTTAGGAA-GAT-ATTCTGCAAGAACGGGACTTACAAGC 1055
||||| || ||| |||||| ||||||||| | | ||| ||||| |||||||||| ||||
Sbjct 956 AAGCAGGATGATATTACAAAGCTTAGGAAAGCTTATT--GCAAGGACGGGACTTATAAGC 1013
Query 1056 CAAACGAATGGATACACATGATGGTTGTTGTTCTTTT-GCTTCACTTGAACTGTTTTGCT 1114
| || |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1014 CGAATGAATGGATGCACATTATGGTTGTTGT-CTTTTTGCTTCACTTGAACTGTTTTGCT 1072
Query 1115 CAGTATGCGCTTTGCGGTCTTAAC-TTAGGCTATAGAAGATCCGAGAGACCTGCCATTGG 1173
||||| |||||||| |||||||| || || || || ||||| ||||||||| |||| ||
Sbjct 1073 CAGTACGCGCTTTGTGGTCTTAATGTT-GGATACAGGAGATCAGAGAGACCTCCCATCGG 1131
Query 1174 TGTAGCTATATGTATATCTTTTGCAATAGCAGCTCCTACGGCTGCGGGTTTGTACACTAT 1233
|| ||||||||||| ||| ||| || | ||||||| ||| ||||||||||||||||||
Sbjct 1132 AGTCGCTATATGTATCTCTGCTGCGATTGGAGCTCCTGCGGTTGCGGGTTTGTACACTAT 1191
Query 1234 TCTTAGTCCACTTGGGAAAGATTATGATCCT-CAAG-GA-GATGAGGAGAATCAAGTGCA 1290
|| |||||||||||||||||||||||| | ||| || || |||||||||||| ||||
Sbjct 1192 ACTAAGTCCACTTGGGAAAGATTATGATGATTCAAATGAAGACGAGGAGAATCAACTGCA 1251
Query 1291 GGCTGTGGGA-GAAGGACCGGTTAGTAATCGCAAGTT-ATCTCTT-GAAAGGAGATATTC 1347
| | | || ||||| | || | |||||| ||| | || || || ||||| |||||
Sbjct 1252 G-CAACGTGAAGAAGGGTCTGT--G-AATCGCCGGTTTA-CT-TTAGAGAGGAGGTATTC 1305
Query 1348 ATTTGCTTCT 1357
|||||||||
Sbjct 1306 GTTTGCTTCT 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83608087775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5