BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05360.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325170 jgi|Araly1|325170|fgenesh1_pm.C_scaffold_6000390 798 0.0
> Ahg325170 jgi|Araly1|325170|fgenesh1_pm.C_scaffold_6000390
Length=534
Score = 798 bits (432), Expect = 0.0
Identities = 521/559 (93%), Gaps = 25/559 (4%)
Strand=Plus/Plus
Query 52 ATGGGAAAATCGATGGTCAGATTCGCAGAATTCGCCATTAGACTCTCTTCCGAGAATCCA 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAAATCGATGGTCAGATTCGCAGAATTCGCCATTAGACTCTCTTCCGAGAATCCA 60
Query 112 ACCAGACCACACAGACCTTCTCCTTCTCCACGGAACAAAGTCTTCGTCAAGAAGACGACG 171
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ACCAGACCCCACAGACCTTCTCCTCCTCCACGGAACAAAGTCTTCGTCAAGAAGACGAC- 119
Query 172 AGAGACACCACGTCACACCTCGATTACTCCAATCTGGTTAAGCTGGAGAAGGCGGGATCG 231
|| | |||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 --AG--A-CACGACACACCTCGATTACTCCAATCTTGTTAAGCTGGAGAAGGCGGGATCG 174
Query 232 CACTCGGGTTCGAATCCCGCTCCGGCTTCGGGTTCGGATCCTATTAACCGGGTTCCCCTC 291
||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 175 CACTCGGGTTCCAATCCCGCTCCGCCTTCGGGTTCGGATCCAATTAATCGGGTTCCCCTT 234
Query 292 GCTCAGGTCGTCGAGGATTGCGTCAGACGCTGGTTCCAGGATACGCTCAAGGAAGCCAAA 351
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 235 GCTCAGGTCGTCGAGGATTGCGTCAGACGCTGGTTTCAGGATACGCTCAAGGAAGCCAAA 294
Query 352 TCTGGTGACGTTGGTATGCAGGTCTTGGTTGGTCAGATGTATTGCAGCGGCTATGGAATC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTGGTGACGTTGGTATGCAGGTCTTGGTTGGTCAGATGTATTGCAGCGGCTATGGAATC 354
Query 412 CCTAAAGATGAAAACAAGGGTCGTGCTTGGATTAACAAAGCTTCAAGAACTAGATCATCA 471
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CCCAAAGATGAAAACAAGGGTCGTGCTTGGATTAACAAAGCTTCAAGAACTAGATCATCA 414
Query 472 GCTTGGCAAGTGAGTGATAAGCCTCCAGGGTATAATGCAAGCGATTCAGATTCCAATGAT 531
||||||||||| | |||| | | |||||||||||||||||||||||
Sbjct 415 GCTTGGCAAGT---T-ATAA---T---G---------CAAGCGATTCAGATTCCAATGAT 455
Query 532 AAGAAAGATTGATGATCATCTTTTGAATGTTTGTATTGCCATTGACTTTGATTTGTTAGT 591
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 456 AAGAAAGATTGATGATCATCTTTCGAATGTTTGTATTGCCAGTGACTTTGATTTGTTAGT 515
Query 592 TTCTCTCTCCTTTGTTTAA 610
|||||||||||||||||||
Sbjct 516 TTCTCTCTCCTTTGTTTAA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5