BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05360.1 Length=730 Score E Sequences producing significant alignments: (Bits) Value Ahg325170 jgi|Araly1|325170|fgenesh1_pm.C_scaffold_6000390 798 0.0 > Ahg325170 jgi|Araly1|325170|fgenesh1_pm.C_scaffold_6000390 Length=534 Score = 798 bits (432), Expect = 0.0 Identities = 521/559 (93%), Gaps = 25/559 (4%) Strand=Plus/Plus Query 52 ATGGGAAAATCGATGGTCAGATTCGCAGAATTCGCCATTAGACTCTCTTCCGAGAATCCA 111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAAATCGATGGTCAGATTCGCAGAATTCGCCATTAGACTCTCTTCCGAGAATCCA 60 Query 112 ACCAGACCACACAGACCTTCTCCTTCTCCACGGAACAAAGTCTTCGTCAAGAAGACGACG 171 |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 ACCAGACCCCACAGACCTTCTCCTCCTCCACGGAACAAAGTCTTCGTCAAGAAGACGAC- 119 Query 172 AGAGACACCACGTCACACCTCGATTACTCCAATCTGGTTAAGCTGGAGAAGGCGGGATCG 231 || | |||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 120 --AG--A-CACGACACACCTCGATTACTCCAATCTTGTTAAGCTGGAGAAGGCGGGATCG 174 Query 232 CACTCGGGTTCGAATCCCGCTCCGGCTTCGGGTTCGGATCCTATTAACCGGGTTCCCCTC 291 ||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 175 CACTCGGGTTCCAATCCCGCTCCGCCTTCGGGTTCGGATCCAATTAATCGGGTTCCCCTT 234 Query 292 GCTCAGGTCGTCGAGGATTGCGTCAGACGCTGGTTCCAGGATACGCTCAAGGAAGCCAAA 351 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 235 GCTCAGGTCGTCGAGGATTGCGTCAGACGCTGGTTTCAGGATACGCTCAAGGAAGCCAAA 294 Query 352 TCTGGTGACGTTGGTATGCAGGTCTTGGTTGGTCAGATGTATTGCAGCGGCTATGGAATC 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 TCTGGTGACGTTGGTATGCAGGTCTTGGTTGGTCAGATGTATTGCAGCGGCTATGGAATC 354 Query 412 CCTAAAGATGAAAACAAGGGTCGTGCTTGGATTAACAAAGCTTCAAGAACTAGATCATCA 471 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 CCCAAAGATGAAAACAAGGGTCGTGCTTGGATTAACAAAGCTTCAAGAACTAGATCATCA 414 Query 472 GCTTGGCAAGTGAGTGATAAGCCTCCAGGGTATAATGCAAGCGATTCAGATTCCAATGAT 531 ||||||||||| | |||| | | ||||||||||||||||||||||| Sbjct 415 GCTTGGCAAGT---T-ATAA---T---G---------CAAGCGATTCAGATTCCAATGAT 455 Query 532 AAGAAAGATTGATGATCATCTTTTGAATGTTTGTATTGCCATTGACTTTGATTTGTTAGT 591 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 456 AAGAAAGATTGATGATCATCTTTCGAATGTTTGTATTGCCAGTGACTTTGATTTGTTAGT 515 Query 592 TTCTCTCTCCTTTGTTTAA 610 ||||||||||||||||||| Sbjct 516 TTCTCTCTCCTTTGTTTAA 534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26876656485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5