BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G05365.1

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325171 jgi|Araly1|325171|fgenesh1_pm.C_scaffold_6000391           383    7e-106
  Ahg942037 jgi|Araly1|942037|scaffold_602581.1                        357    4e-98 


> Ahg325171 jgi|Araly1|325171|fgenesh1_pm.C_scaffold_6000391
Length=234

 Score =  383 bits (207),  Expect = 7e-106
 Identities = 226/235 (96%), Gaps = 2/235 (1%)
 Strand=Plus/Plus

Query  90   ATGGCTAATGTTGTGGAGCTAAAAGTGAATTTGCATTGTGATGAATGCATCAGGAAAATA  149
            |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct  1    ATGGCTAATGTTGTGGAGCTGAAAGTGAATTTGCATTGCGACGAATGCATCAGGAAAATA  60

Query  150  CTTAAAGCCATCAAGAAAATTGAAGATATAGAAG-CATACGATGTGGACACACAGCTCAA  208
            ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct  61   CTTAAAGCCATCAAGAAAATTGAAGATATAG-AGACATACGATGTGGACACACAGCTGAA  119

Query  209  CAAAGTGACAGTCACAGGGAATGTAACAGAGGAACAAGTGATTAGGGTTCTTCAAAAGGT  268
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CAAAGTAACAGTCACAGGGAATGTAACAGAGGAACAAGTGATTAGGGTTCTTCAAAAGGT  179

Query  269  GAGGAAAGCTGCTGTTAAATGGGACCAAGACAATCAAACCCTCTTTACCAACTAG  323
            |||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  180  GAGGAAAGCTGCTGTTAAATGGGACCAAGACAATCAAACCCTCTTTGCGAACTAG  234


> Ahg942037 jgi|Araly1|942037|scaffold_602581.1
Length=219

 Score =  357 bits (193),  Expect = 4e-98
 Identities = 210/218 (96%), Gaps = 2/218 (1%)
 Strand=Plus/Plus

Query  67   TTTATTTCACAAAAGTTTCTGTGATGGCTAATGTTGTGGAGCTAAAAGTGAATTTGCATT  126
            |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  3    TTTATTCCACAAAAGTTTCTGTGATGGCTAATGTTGTGGAGCTGAAAGTGAATTTGCATT  62

Query  127  GTGATGAATGCATCAGGAAAATACTTAAAGCCATCAAGAAAATTGAAGATATAGAAG-CA  185
            | || |||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct  63   GCGACGAATGCATCAGGAAAATACTTAAAGCCATCAAGAAAATAGAAGATATAG-AGACA  121

Query  186  TACGATGTGGACACACAGCTCAACAAAGTGACAGTCACAGGGAATGTAACAGAGGAACAA  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  TACGATGTGGACACACAGCTCAACAAAGTGACAGTCACAGGGAATGTAACAGAGGAACAA  181

Query  246  GTGATTAGGGTTCTTCAAAAGGTGAGGAAAGCTGCTGT  283
            ||||||||||||||| ||||||||||||||||||||||
Sbjct  182  GTGATTAGGGTTCTTTAAAAGGTGAGGAAAGCTGCTGT  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18619927432


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5