BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05370.1
Length=433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487332 jgi|Araly1|487332|fgenesh2_kg.6__466__AT5G05370.1 442 1e-123
Ahg928793 jgi|Araly1|928793|scaffold_301250.1 263 8e-70
> Ahg487332 jgi|Araly1|487332|fgenesh2_kg.6__466__AT5G05370.1
Length=365
Score = 442 bits (239), Expect = 1e-123
Identities = 340/385 (88%), Gaps = 22/385 (6%)
Strand=Plus/Plus
Query 8 TCGAAATCGGAGATTTGGTCGTCGAAAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTG 67
||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGGAATCGGAGAATTGGTCGACAAAAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTG 60
Query 68 GTTTACGCGTTATCGCCGTTTCAGCAGAAGATCATGACGGGTCTTTGGAAGGATCTTCCG 127
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 GTTTACGCGTTATCGCCGTTTCAGCAGAAGATCATGACGGGTCTATGGAAGGATCTGCCG 120
Query 128 GAGAAGATTCACCACAAGGTCTCAGAGAATTGGATCAGTACTATTCTCCTCGTCGCTCCT 187
|||||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 121 GAGAAGATCCACCACAAGGTCTCTGAGAATTGGATCAGCACTATTCTCCTCCTCGCTCCC 180
Query 188 GTCGTCGGAACCTACTCGTATGCTCAGTACTTCAAAGAACAAGAGAAGCTGGAGCACAGG 247
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GTCATCGGAACCTACTCGTATGCTCAGTACTACAAAGAACAAGAGAAGCTGGAGCACAGG 240
Query 248 TTCTAA-GCATGGAGAT-ATCTTGATTCCAATTCTTTCCTCATTTTTCATTCTCCAAAAT 305
|||||| ||||| | | | | || |||||||||||| ||| |||||||||||||||||
Sbjct 241 TTCTAAAGCATG-ATTTTA-CAAGAATCCAATTCTTTCTTCACTTTTCATTCTCCAAAAT 298
Query 306 GTGGTTTATTGACAGTTTTGTAATTTTATACTCTAAATAGAAGCGGAAAAGTTGCTTCCT 365
||||| ||||||| | ||| ||| |||||||||||||||||||||
Sbjct 299 GTGGTCAATTGACA-------A-TTT-ATA---------GAAGCGGAAAAGTTGCTTCCT 340
Query 366 TGCATTTTTTGTTGAATAAATTTGT 390
| |||||||||||||||||||||||
Sbjct 341 TACATTTTTTGTTGAATAAATTTGT 365
> Ahg928793 jgi|Araly1|928793|scaffold_301250.1
Length=259
Score = 263 bits (142), Expect = 8e-70
Identities = 200/228 (88%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 33 AAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCG-TTATCGCCGTTTCAG 91
||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 19 AAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCACTT-TCGCCGTTCCAG 77
Query 92 CAGAAGATCATGACGGGTCTTTGGAAGGATCTTCCGGAGAAGATTCACCACAAGGTCTCA 151
|||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 78 CAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAGATCCATCACAAGGTCTCC 137
Query 152 GAGAATTGGATCAGTACTATTCTCCTCGTCGCTCCTGTCGTCGGAACCTACTCGTATGCT 211
|||||||||||||| | | ||| ||||| | |||||||| | |||||||| |||||||
Sbjct 138 GAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTTGCAACCTACTGGTATGCT 197
Query 212 CAGTACTTCAAAGAACAAGAGAAGCTGGAGCACAGGTTCT-AAGCATG 258
|| |||||||| ||||| |||||||| |||||||| |||| |||||||
Sbjct 198 CAATACTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGAAGCATG 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15605635901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5