BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05380.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939966 jgi|Araly1|939966|scaffold_600510.1 1068 0.0
> Ahg939966 jgi|Araly1|939966|scaffold_600510.1
Length=692
Score = 1068 bits (578), Expect = 0.0
Identities = 640/670 (96%), Gaps = 3/670 (0%)
Strand=Plus/Plus
Query 65 CCCACGCGCAGTCGTGTGTGATGATGGCTAATCCTCCAACGTTACCGATCTCAGACCATT 124
||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CCCACGCGCAGTC--GTGTG-TGATGGCTAAACCTCCAACGTTACCGATCTCAGACCATT 57
Query 125 CCGGTGGTGGTTCCCAATCTCAGCAACCCGTATCAACACCGGCGTTTCGCACGTTCCTCT 184
||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 58 CCGGTGGTGGTTCTCAATCTCAGCAAACCGTATCCGCACCGGCGTTTCGCACGTTCCTCT 117
Query 185 CTCGCCTCTCGTCGTCAATCCGCCAAAGCCTATCGCAGCGGCGTCCATGGTTAGAACTCG 244
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 CTCGCCTCTCATCGTCGATCCGTCAAAGCCTATCGCAGCGGCGTCCATGGTTAGAACTCG 177
Query 245 TAGATCGAAGCGCAATTTCACGTCCAGAGTCTCTCACCGATGCGTATTCTCGGATCCGGA 304
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 178 TAGATCGGAGCGCAATTTCACGGCCAGAATCTCTCACCGATGCGTATTCTCGGATCCGGA 237
Query 305 GGAATCTCCCTTACTTCAAGGTAAACTACGTGACGATCGtctccttggtgctcgcgctct 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 GGAATCTCCCTTACTTCAAGGTAAACTACGTGACGATCGTCTCATTGGTGCTCGCGCTCT 297
Query 365 cgctcctctcccatcctttctctcttctcgttctcctatgcctcttctgcgcttggatct 424
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 CGCTTCTCTCCCATCCATTCTCTCTTCTCGTTCTCCTATGCCTCTTCGGCGCTTGGATCT 357
Query 425 tcctctACCTTTTCCGTCCGTCAGATCAACCTCTGGTCGTCCTCGGCCGTACGTTTTCAG 484
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 358 TCCTCTACCTTTTCCGTCCGTCAGATCAACCTCTGGTCATTCTCGGCCGTACGTTTTCAG 417
Query 485 ATCGTGAGACGCTTGGTGTTTTGGTAATTTTGACAATCGTCGTCGTCTTTTTAACCAGCG 544
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||
Sbjct 418 ATCGTGAGACGCTTGGAGTTTTGGTAATTTTGACAATCGTCGTCGTCTTCTTGACCAACG 477
Query 545 TTGGGTCTTTATTGACCTCTGCTTTGATGATTGGTTTCGGAATCGTATGCTTACACGGCG 604
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGGATCTTTATTGACCTCTGCTTTGATGATTGGTTTCGGAATCGTATGCTTACACGGCG 537
Query 605 CGTTTAGAGTCCCGGAGGATCTTTTCTTGGATGATCAAGAACCTGCTAACACCGGCTTAT 664
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 CATTTAGAGTTCCGGAGGATCTTTTCTTGGATGATCAAGAACCTGCTAACACCGGATTAT 597
Query 665 TGTCTTTCCTTAGCGGAGCCGCCACTTCCGCCGCAGTTGCCGCCGCATCAACTCCTGCGT 724
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 598 TGTCTTTCCTTAGCGGAGCCGCCACCTCCGCCGCAGTTGCCGCCGCATCAACTCCTGCGT 657
Query 725 CAGGTCGTGT 734
|||| |||||
Sbjct 658 CAGGCCGTGT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5