BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05390.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487334 jgi|Araly1|487334|fgenesh2_kg.6__468__AT5G05390.1 2743 0.0
Ahg325328 jgi|Araly1|325328|fgenesh1_pm.C_scaffold_6000548 200 3e-50
> Ahg487334 jgi|Araly1|487334|fgenesh2_kg.6__468__AT5G05390.1
Length=1698
Score = 2743 bits (1485), Expect = 0.0
Identities = 1628/1699 (96%), Gaps = 2/1699 (0%)
Strand=Plus/Plus
Query 1 ATGACGACTGTTCACACATTCTCTATATTATTGTTCTTTTGTTCCCTTTTCTCGGCTTCA 60
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1 ATGACGACTGTCCACACATTCTCTATTTTATTGTTCCTTTGTTCCCTTTTCTCGGCTTCA 60
Query 61 TTGATTATCGCCAAAGTCCAACACCATGATTTTGTCATACAAGAGACGCCGGTGAAGAGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGATTATCGCCAAAGTCCAACACCATGATTTTGTCATACAAGAGACGCCGGTGAAGAGG 120
Query 121 CTGTGCAAGACCCGTAACGCCATCACCGTCAACGGAATGTTTCCGGGGCCTACGCTCGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGTGCAAGACCCGTAACGCCATCACCGTCAACGGAATGTTTCCGGGGCCTACGCTCGAA 180
Query 181 GTCAACAACGGCGACACTCTTGAAGTCAAAGTGCATAACCGTGCTCGTTACAATATCACC 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCAACAACGGCGATACTCTTGAAGTCAAAGTGCATAACCGTGCTCGTTACAATATCACC 240
Query 241 ATCCATTGGCATGGAGTGAGGCAGATAAGAACCGGATGGGCTGATGGCCCAGAATTCGTG 300
||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| ||
Sbjct 241 ATCCATTGGCATGGAGTTAGGCAGATAAGAACTGGATGGGCTGATGGGCCTGAATTTGTA 300
Query 301 ACCCAATGCCCGATCCGACCCGGAAAGAGCTACACGTACCGTTTCACTATCCAAGGCCAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ACCCAATGCCCGATCCGACCCGGAAAGAGCTACACGTACCGTTTCACTATTCAAGGCCAA 360
Query 361 GAAGGGACATTGTGGTGGCACGCTCACAGCTCTTGGCTCCGAGCCACTGTCTACGGCGCA 420
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 361 GAAGGGACATTATGGTGGCACGCTCACAGCTCCTGGCTACGAGCCACTGTCTACGGCGCA 420
Query 421 CTCATCATTCACCCAACCCCTGGTTCCTCTTTTCCTTTCCCTAAACCGGACCGCCAAACC 480
|||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 421 CTCATCATCCACCCAACCCCTGGTTCCTCTTTTCCTTTCCATAAACCAGACCGCCAAACC 480
Query 481 GCCCTCATGCTCGGGGAATGGTGGAATGCAAATCCGGTTGATGTAATTAACCAAGCGACT 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GCACTCATGCTCGGGGAATGGTGGAATGCAAATCCGGTTGATGTAATTAACCAAGCTACT 540
Query 541 CGAACCGGAGCTGCTCCTAATATATCCGACGCTTATACCATCAATGGTCAACCGGGTGAT 600
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 541 CGAACCGGAGCTGCTCCGAATATATCCGACGCTTATACCATCAATGGCCAACCCGGTGAT 600
Query 601 CTCTATAATTGCTCGACCAAAGAGACTGTTGTAGTACCGATAAATTCAGGGGAAACAAGT 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCTATAATTGCTCAACCAAAGAGACTGTTGTAGTACCGATAAATTCAGGGGAAACAAGT 660
Query 661 CTCCTACGAGTGATCAACGCAGCTTTAAACCAACCGCTATTTTTCACTGTGGCTAACCAC 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 CTCCTACGAGTGATCAACGCAGCTTTAAACCAACCGCTATTTTTCACGGTGGCTAACCAC 720
Query 721 AAGCTCACTGTAGTTGGAGCCGACGCATCTTACCTCAAACCATTCACCACAAAGGTCCTT 780
||||||||||| ||||||||||| || |||||||| ||||||||| ||||||||||||||
Sbjct 721 AAGCTCACTGTGGTTGGAGCCGATGCTTCTTACCTGAAACCATTCGCCACAAAGGTCCTT 780
Query 781 ATGTTAGGTCCAGGCCAAACTACTGACGTACTTCTAACCGCAGACCAACCCCCAAAACGC 840
|||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 781 ATGTTAGGTCCAGGACAAACCACTGACGTACTTCTAACCGCCGACCAACCGCCAAAACGC 840
Query 841 TATTACATAGCAGCAAGAGCTTACCAAAGCGCTCAAAACGCACCGTTTGATAACACCACA 900
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 841 TATTACATAGCAGCAAGAGCTTATCAAAGCGCCCAAAACGCACCGTTCGATAACACCACA 900
Query 901 ACTACAGCCATTCTCCAATACAAGAAGACGACGACCACTTCTAAACCAATCATGCCGGTT 960
||||| ||||| |||||||||||||| |||| | ||||||||||||||||| ||||||||
Sbjct 901 ACTACTGCCATCCTCCAATACAAGAAAACGAGGGCCACTTCTAAACCAATCGTGCCGGTT 960
Query 961 TTGCCTGCCTTCAACGACACGAACACCGTGACGTCTTTCTCAAGGAAGTTCAAATCTCTC 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGCCTGCCTTCAACGACACCAACACCGTGACGTCTTTCTCAAGGAAGTTCAAATCTCTC 1020
Query 1021 CGTAACGTCGTCGTACCGAAAACAATCGATGATAATTTGTTCTTCACCATTGGTTTAGGT 1080
|| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 1021 CGAAACGTCGTCGTACCGAAAACAATCGACGATAATTTGTTCTTCACTATCGGTTTAGGT 1080
Query 1081 CTTGATAATTGTCCCAAAAAATTCCCTAAAAGCCGGTGCCAAGGCTTGAACGGAACCCGG 1140
|| |||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||
Sbjct 1081 CTCGATAATTGTCCCAAGAATTTCCCTAAAAACCGGTGCCAAGGCTTAAACGGAACCCGG 1140
Query 1141 TTTACCGCATCGATGAACAACGTTTCGTTTGTTCTACCGTCGAATTTCTCGCTCTTACAA 1200
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 TTTACTGCATCGATGAACAACGTTTCGTTTGTTCTACCGTCGAATTTCTCGCTCTTGCAA 1200
Query 1201 GCACATTCCAACGGAATTCCCGGCGTTTTCACAACGGATTTTCCGTCTAAACCGCCGGTT 1260
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCACATTCCAACGGCATTCCCGGCGTTTTCACAACGGATTTTCCGTCTAAACCGCCGGTT 1260
Query 1261 AAATTCGATTATACCGGAAATAACATAAGCAGGGCTCTGTTTCAGCCGGTTAAGGGTACT 1320
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1261 AAATTCGATTATACCGGAAATAACATAAGCCGGGCTTTGTTTCAGCCGGTTAAGGGTACT 1320
Query 1321 AAACTGTATAAACTAAAGTATGGATCTCGAGTTCAAGTTGTTTTACAGGATACAAACATT 1380
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1321 AAACTGTACAAACTCAAGTATGGATCTCGAGTTCAGGTTGTTTTACAGGATACGAACATT 1380
Query 1381 GTTACATCGGAGAATCACCCGATTCATCTTCACGGTTACGATTTCTACATTGTTGGTGAA 1440
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1381 GTTACGTCGGAGAATCACCCGATTCATCTTCATGGTCACGATTTCTACATTGTTGGTGAA 1440
Query 1441 GGGTTCGGTAACTTTAATCCCAAGAAAGATACTTCTAAGTTTAATCTTGTTGATCCTCCG 1500
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1441 GGGTTTGGTAACTTTAATCCCAAGAAAGATACTTCTAAGTTTAATCTTGTTAATCCTCCA 1500
Query 1501 CTTAGAAACACTGTGGCTGTTCCTGTTAATGGATGGGCTGTTATCAGATTCGTGGCAGAT 1560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 CTTAGAAACACTGTGGCTGTTCCTGTTAATGGATGGGCTGTTATAAGATTCGTGGCAGAT 1560
Query 1561 AATCCAGGGGTTTGGTTGATGCATTGTCACTTAGATGTTCATATAAAGTGGGGTCTTG-C 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1561 AATCCAGGGGTTTGGTTGATGCATTGTCACTTAGATGTTCATATAAAGTGGGGT-TTGGC 1619
Query 1620 TATGGCGTTCTTGGTCGACAATGGTGTCGGAGAATTGGAGACTCTTGAAGCTCCTCCTCA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TATGGCGTTCTTGGTCGACAATGGTGTCGGAGAATTGGAGACTCTTGAAGCTCCTCCTCA 1679
Query 1680 CGATCTACCTATTTGCTAG 1698
| |||||||||||||||||
Sbjct 1680 CTATCTACCTATTTGCTAG 1698
> Ahg325328 jgi|Araly1|325328|fgenesh1_pm.C_scaffold_6000548
Length=1710
Score = 200 bits (108), Expect = 3e-50
Identities = 631/875 (72%), Gaps = 69/875 (8%)
Strand=Plus/Plus
Query 85 CATGATTTTGTCATACAAGAGACGCCGGTGAAGAGGCTGTGCA-AGACCCGTAACGCCAT 143
||||| ||||| | |||||||||||||||||||||||||||| || | |||| | ||
Sbjct 76 CATGAGTTTGTTGTTCAAGAGACGCCGGTGAAGAGGCTGTGCAGAGTTCA-TAACTCGAT 134
Query 144 CACCGTCAACGGA-ATGTTTCCGGGGCCTACGCTCGAAG-T-CAACAACGGCGACACTCT 200
||| || || ||| | |||||| ||||| || || | || | | | ||||| || | ||
Sbjct 135 CACGGTGAATGGACA-GTTTCCAGGGCCGAC-CTTGGAGGTGCGA-AACGGTGATTCCCT 191
Query 201 TGA-AGTCAAAGTGCATAACCGT-GCTCGTTACAATATCACCATCCATTGGCATGG-AGT 257
|| | ||| || ||||| | ||||| ||||| |||||| |||| |||||||| | |
Sbjct 192 TGTCA-TCACAGC-CATAAACAAAGCTCGGTACAACATCACCCTCCACTGGCATGGGA-T 248
Query 258 GA-GGCAGATAAG-AA-CCGGATGGGCTGATGGCCCAGAATTCGTGACCCAATGCCCGAT 314
| ||||||| || || || |||||| ||||| ||||||| | | ||||| ||||| ||
Sbjct 249 -ACGGCAGATGAGGAATCC--ATGGGCGGATGGACCAGAATACATAACCCAGTGCCCAAT 305
Query 315 CCGACCCGGAAAGAGCTACACGTACCGTTTCACTATCCAAGGCCAAGAAGGGACATTGTG 374
|| ||| ||| ||| ||||||||| | ||||| || ||| ||||||||| || |||||
Sbjct 306 CCAACCAGGAGGGAGTTACACGTACAGGTTCACCATTGAAGACCAAGAAGGTACGTTGTG 365
Query 375 GTGGCACGCTCACAGCTCT-TGGCTCCGAGCCACTGTCTACGGCGCACTCATCATTCACC 433
|||||| || ||||| | ||||| |||||||| || || ||||| ||||| || | ||
Sbjct 366 GTGGCATGCCCACAG-TAGATGGCTGCGAGCCACCGTGTATGGCGCTCTCATTATCCGCC 424
Query 434 CAACC-C-CTGGT-TCCTCTTTTCC-TTTCCC--TAAA-CCGGACCGCCAAACCGCCCTC 486
| || | || | ||||| || || ||| || | | || | | | | |||||
Sbjct 425 CT-CCGCTCTCTTCTCCTCATTACCCTTTTCCAGTTATTCCCAAGAGAGAGATTACCCTC 483
Query 487 ATGCTC-GGGGAATGGTGG-A-ATGCAAATCCGGTTGATGTAATTAACCAAGCG-ACT-C 541
| || ||||| |||||| | | | ||| || | ||||| | ||| ||| | | |
Sbjct 484 CT-CTTAGGGGAGTGGTGGGACA-G-AAACCCCATGGATGTCCTCAACTTAGCCCAGTTC 540
Query 542 GAACCGGAGCTGCTCCTAATATATCCGACGC-TTATACCATCAATGGTCAACCGGGTGAT 600
| ||||||| || || || || || ||||| || |||||||||||||| || || |||
Sbjct 541 -A-CCGGAGCAGCACCAAACATCTCAGACGCCTTC-ACCATCAATGGTCAGCCTGGCGAT 597
Query 601 CTCTATA-AT-TGCTCGACCAAAGAGACTGTTGTAG-TACCGA-TAAATTCAGGGGAAAC 656
||||| | || | || | |||| || ||| || || | | | | ||||| || |
Sbjct 598 CTCTACAGATGTTCTAG-CCAA-GAAACT-TTA-AGATTTCTAGTGGGGTCAGGAGAGAT 653
Query 657 AAGTC-TCCT-ACGAGTGATCAACGCAGCTTTAAACCAACCGCTATT-TTTCACTGTGGC 713
||| |||| | | || ||||| | ||||| |||||| || || ||| ||| ||
Sbjct 654 T-GTCCTCCTCAGG-GTCATCAATTCTGCTTTGAACCAAGAACTCTTCTTTGG-TGTCGC 710
Query 714 TAACCACAAGCTCACTGTAGTTGGAGCCGACGCATCTTAC-CTCAAACCATTCACCACAA 772
||| ||||| || || || || | || || || || ||| | |||||| ||| | || |
Sbjct 711 TAATCACAAACTGACAGTGGTCGCTGCGGATGCCTCCTACAC-CAAACCTTTCTCGACTA 769
Query 773 AGGTCCTTATGTTAGGTCCAGGCCAAACTACTGACGTACTTCTAACCGCAGACCAACCCC 832
| ||| | |||||||||||||| || || ||||| || |||||||||||||||||||| |
Sbjct 770 ATGTCATAATGTTAGGTCCAGGTCAGACAACTGATGTGCTTCTAACCGCAGACCAACCGC 829
Query 833 CAAAACGCTATTACATAGCAGCA-AGAGCTTACCAA-AGCGCTCAAAACGCA-CCGTTTG 889
|| || || ||||| |||||| | || ||| || || || ||| ||| || ||||
Sbjct 830 CAGCACATTACTACATGGCAGCACAT-GCCTAC-AACAGTGC-CAA--CGCTGCC-TTTG 883
Query 890 ATAACACCACAACTACAGCCATTCTCCAA-TACAA 923
| ||||||||||| || || || ||| || |||||
Sbjct 884 ACAACACCACAACCACTGCAATCCTC-AAGTACAA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5