BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05400.1 Length=2625 Score E Sequences producing significant alignments: (Bits) Value Ahg351902 jgi|Araly1|351902|fgenesh1_pg.C_scaffold_6002495 941 0.0 > Ahg351902 jgi|Araly1|351902|fgenesh1_pg.C_scaffold_6002495 Length=2544 Score = 941 bits (509), Expect = 0.0 Identities = 915/1109 (83%), Gaps = 36/1109 (3%) Strand=Plus/Plus Query 22 GCAATATCCTGTGACCAGGCTGTTAATAACCTTACAAGCTGCCTTAGCAGGAAC-CAAAA 80 |||||||| |||||||| ||| ||||||||||||| |||||| ||||| || || ||| Sbjct 22 GCAATATCATGTGACCAAGCTATTAATAACCTTACCAGCTGCATTAGCGGGGACGGAAAT 81 Query 81 TCGCTTCCGCAACCTCGTAGATC-ATGTAGCGGCTCTAAAGAAAACTGTACGACAGTTGG 139 || |||||||||||| || || | || | || |||| | | | || ||||||| ||| Sbjct 82 TC-CTTCCGCAACCTTGT-GAACAATCTTGCATCTCTGAGGCGAGCTACACGACAGCTGG 139 Query 140 AGGCAAGACGAGATGATTTGTTGAAAAGGATTAAGGTACAAGAAGATAGAGGTCTAAACC 199 | |||||| ||||||||||| ||| |||| | || || ||||||||| | || | || || Sbjct 140 AAGCAAGAGGAGATGATTTGCTGACAAGGGTAAAAGTGCAAGAAGATGGTGGCCGAAGCC 199 Query 200 TATTGGATGAAGTCCAACAATGGCTTTCTGAGGTCGAAAGT-AGGGTATGTGAAGCCCAT 258 ||| | |||||||||| |||||||||| || || || | | | |||| ||||| ||||| Sbjct 200 GATTAGCTGAAGTCCAAGAATGGCTTTCGGAAGTTGATA-TCACGGTACGTGAAACCCAT 258 Query 259 GATATCCTCTCGCAAAGCGATGAAGAAATAGATAATTTATGTTGTGGCCAATATTGTTCT 318 ||| | || | |||||||||||| ||||||||||| ||||||||| ||||||||||| Sbjct 259 GATTTACTTTTGCAAAGCGATGATGAAATAGATAAGTTATGTTGTTATCAATATTGTTCC 318 Query 319 AAGAGA-TGTAAAT-ATAGCTACGACTATAGTAAAAGTGTAATCAA-CAAGTTGCA-AGA 374 |||| | || | || | || | | ||||||||||| ||| |||| | ||||| | ||| Sbjct 319 AAGA-ATTGGATATCA-AGAAATGGTTATAGTAAAAGGGTAGTCAAGC-AGTTG-ACAGA 374 Query 375 TGTTGAGAATCTTC-TATCTAAAGGCGTTTTTGATGAAGTTGCTCAAAAAGGTCCTATAC 433 ||||| || || ||| || ||| |||||||||||||| |||||| ||||||||||| Sbjct 375 AACTGAGATTC-TCTTATTTAGAGGAGTTTTTGATGAAGTAACTCAAAGAGGTCCTATAC 433 Query 434 CAAAGGTGGAGGAAAGGCTTTTCCACCAGGAGATAGTTGGTCAAGAGGCAATTG-TTGAA 492 |||||||||||| ||||||||||||||| ||||| |||||||||||| ||||| ||||| Sbjct 434 AAAAGGTGGAGGAGAGGCTTTTCCACCAGAAGATATTTGGTCAAGAGG-AATTGATTGAA 492 Query 493 TCAACATGGAATAGTATGATGGAAGTGGGAGTTGGGCTTTTGGGTATATATGGTATGGGG 552 ||||| ||||||||||| ||||| | ||||||||| |||||||||| ||||| |||||| Sbjct 493 TCAACCTGGAATAGTATCATGGAGGACGGAGTTGGGATTTTGGGTATTTATGGCATGGGG 552 Query 553 GGAGTAGGCAAGACCACCCTCCTCTCTCAAATCAACAACAAGTTCCGCACAGTAAGCAAC 612 ||||| ||||||||||| |||||||||||||||||||||||||| | || || ||||||| Sbjct 553 GGAGTGGGCAAGACCACACTCCTCTCTCAAATCAACAACAAGTTTCTCATAGAAAGCAAC 612 Query 613 GATTTTGACATTGCAATATGGGTTGTAGTGTCTAAAAACCCAACTGTTAAGAGGATTCAA 672 | |||||||||| |||||||||||| |||||||| ||| |||| ||||||||||||||| Sbjct 613 CAATTTGACATTGTAATATGGGTTGTGGTGTCTAACAACACAACGGTTAAGAGGATTCAA 672 Query 673 GAAGACATTGGAAAAAGACTAGATCTCTACAACGAGGGA-TGGGAACA-AAAAACAGAAA 730 ||||| ||||| ||||||||||| ||||| | || | |||||| | |||||||||| Sbjct 673 GAAGATATTGGCAAAAGACTAGAGATCTACGATGA-AAACTGGGAA-AGGAAAACAGAAA 730 Query 731 ATGAGATAGCAT-CAACCATAAAGAGGTCTTTAGAGAATAAGAAG-TATATGCTATTGTT 788 |||||| ||| | | ||||| | |||| || ||| ||| || ||| || ||||||| Sbjct 731 ATGAGAAAGCGTGTGA-TATAAACAAGTCTCTAAAGACCAAG-AGATATGTGTTATTGTT 788 Query 789 GGATGATATGTGGACGAAGGTGGATTTAGCAAACATTGGAATTCCGGTTCCTAA-AAGAA 847 |||||||||||||| ||||||||||||||||| ||||||| |||||||||| || ||||| Sbjct 789 GGATGATATGTGGAGGAAGGTGGATTTAGCAAGCATTGGAGTTCCGGTTCC-AAGAAGAA 847 Query 848 ATGGAAGTAAAATAGCATTCACAAGTCGTTCTAATGAAGTTTGCGGGAA-AATGGGGGTA 906 ||||||||||||||| |||||| | ||||||||||||||||||| |||| |||||||||| Sbjct 848 ATGGAAGTAAAATAGTATTCACCACTCGTTCTAATGAAGTTTGC-GGAAGAATGGGGGTA 906 Query 907 GATAAGGAGATAGAGGTAACATGTTTGATGTGGGATGATGCCTGGGATTTGTTCACGAGG 966 |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| | Sbjct 907 GATAAGGAGATAGAGGTAACATGTATGATGTGGGATGATGCTTGGAATTTGTTCACTAAA 966 Query 967 AACATGAAAGAGACATTGGAAAGTCATCCAAAGATTCCCGAAGTTGCAAAATCAATAGC- 1025 || ||| |||| ||| | ||||||||||| | |||| ||||| |||| |||| | || Sbjct 967 AATATGGAAGAAACAATAAAAAGTCATCCAGATATTCTTGAAGTCGCAAGATCAGTTGCG 1026 Query 1026 AAGAAAGTGCAATGGCTTGCCACTTGCTCTCAATGTCATTGGCGA-GACCATGGCTCGCA 1084 || |||||| || ||||||||||| ||||||||||| |||||||| | | ||||| |||| Sbjct 1027 AA-AAAGTGTAAAGGCTTGCCACTCGCTCTCAATGTAATTGGCGAAGTC-ATGGCACGCA 1084 Query 1085 AGAAGTCCA-TCGAAGAGTGGCATGACGC 1112 ||||| | | | |||||||||||| |||| Sbjct 1085 AGAAGAC-AGTTGAAGAGTGGCATCACGC 1112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98996546755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5