BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05420.1 Length=432 Score E Sequences producing significant alignments: (Bits) Value Ahg892425 jgi|Araly1|892425|Al_scaffold_0006_421 726 0.0 Ahg892422 jgi|Araly1|892422|Al_scaffold_0006_418 459 1e-128 > Ahg892425 jgi|Araly1|892425|Al_scaffold_0006_421 Length=432 Score = 726 bits (393), Expect = 0.0 Identities = 419/432 (97%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 1 ATGTCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG 60 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG 60 Query 61 AGTAAAGCCTTTTCTATTAGTGTTGAGAAGCAAACGCCTGACCTAGATGGCCTCATTGTT 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGTAAAGCCTTTTCTAGTAGTGTTGAGAAGCAAACGCCTGACCTAGATGGCCTCATTGTT 120 Query 121 GAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAGCCTGGCAAAAGGGTAAGT 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAGCCTGGCAAAAGGGTAAGT 180 Query 181 GTCCATTATACTGGAAAGCTTCAGGGGAATGGGAAGATTTTCGATTCCACCGTTGGAAAA 240 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 GTCCATTATACTGGAAAGCTTCAAGGGAATGGGAAGATTTTCGATTCCACCGTTGGAAAA 240 Query 241 TCACGTTATAAGTTTCGTCTAGATGCTGGAAAAGTCATTAAGGGATTGGATGTTGGCCTT 300 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 241 TCACGTTATAAGTTTCGTCTAGGTGCTGGAAAAGTCATTAAGGGATTGGATGTTGGCGTC 300 Query 301 AATGGAATGCTTGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGAAATGGGGTATGGT 360 ||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 301 AATGGCATGCGTGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGCAATGGGCTATGGT 360 Query 361 GCGGAAGGTGCTGGTAGCATTCCCCCTGACTCTTGGCTGGTCTTTGATGTCGAGCTGCTT 420 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 361 GCGGAAGGTGCTGGTAGCATTCCTCCTTACTCTTGGCTGGTCTTTGATGTCGAGCTGCTT 420 Query 421 AATGTTAAATAA 432 |||||||||||| Sbjct 421 AATGTTAAATAA 432 > Ahg892422 jgi|Araly1|892422|Al_scaffold_0006_418 Length=1017 Score = 459 bits (248), Expect = 1e-128 Identities = 324/360 (90%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 1 ATGTCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG 60 ||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 661 ATGGCCCCATCTGAATCTGCTAAGAAGAAAGAGAAGACAAGTGAGGAAGCTACAGTGGAG 720 Query 61 -AGTAAAGCCTTTTCTATTAGTGTTGAGAAGCAAACGCCTGACCTAGATG-GCCTCATTG 118 | ||||||| |||||| |||||||||||||||||||||||||| ||||| | |||| || Sbjct 721 TA-TAAAGCCATTTCTACTAGTGTTGAGAAGCAAACGCCTGACCCAGATGAG-CTCAATG 778 Query 119 TTGAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAG-CCTGGCAAAAGGGTA 177 |||| || || || ||||| |||||||||||||||||||||| | |||||||||||||| Sbjct 779 TTGACGACTTGTGTATGGGCAACCCCAACGGCAAGAAAGCTG-GTCCTGGCAAAAGGGTT 837 Query 178 AGTGTCCATTATACTGGAAAGCTTCAGGGGAATGGGAAGATTTTCGATTCCACCGTTGGA 237 | |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| Sbjct 838 ACTGTCCATTATACTGGAAAGCTTCATGAAAATGGGAAGATTTTCGATTCCACTGTTGGA 897 Query 238 AAATCACGTTATAAGTTTCGTCTAGATGCTGGAAAAGTCATTAAGGGATTGGATGTTGGC 297 ||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 898 AAATCTCCTTATAAGTTTCGTCTAGGTGTTGGAAAAGTCATTAAGGGATTGGATGTTGGT 957 Query 298 CTTAATGGAATGCT-TGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGAAATGGGGTA 356 ||||||||||| | |||||||||||||||||||||||| |||||||||| | | ||||| Sbjct 958 GTTAATGGAATG-TATGTTGGTGGCAAAAGAAAGCTTACCATTCCTCCAGCATTCGGGTA 1016 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15567480312 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5