BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05420.1
Length=432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892425 jgi|Araly1|892425|Al_scaffold_0006_421 726 0.0
Ahg892422 jgi|Araly1|892422|Al_scaffold_0006_418 459 1e-128
> Ahg892425 jgi|Araly1|892425|Al_scaffold_0006_421
Length=432
Score = 726 bits (393), Expect = 0.0
Identities = 419/432 (97%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 1 ATGTCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG 60
Query 61 AGTAAAGCCTTTTCTATTAGTGTTGAGAAGCAAACGCCTGACCTAGATGGCCTCATTGTT 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTAAAGCCTTTTCTAGTAGTGTTGAGAAGCAAACGCCTGACCTAGATGGCCTCATTGTT 120
Query 121 GAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAGCCTGGCAAAAGGGTAAGT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAGCCTGGCAAAAGGGTAAGT 180
Query 181 GTCCATTATACTGGAAAGCTTCAGGGGAATGGGAAGATTTTCGATTCCACCGTTGGAAAA 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCCATTATACTGGAAAGCTTCAAGGGAATGGGAAGATTTTCGATTCCACCGTTGGAAAA 240
Query 241 TCACGTTATAAGTTTCGTCTAGATGCTGGAAAAGTCATTAAGGGATTGGATGTTGGCCTT 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 241 TCACGTTATAAGTTTCGTCTAGGTGCTGGAAAAGTCATTAAGGGATTGGATGTTGGCGTC 300
Query 301 AATGGAATGCTTGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGAAATGGGGTATGGT 360
||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 301 AATGGCATGCGTGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGCAATGGGCTATGGT 360
Query 361 GCGGAAGGTGCTGGTAGCATTCCCCCTGACTCTTGGCTGGTCTTTGATGTCGAGCTGCTT 420
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 361 GCGGAAGGTGCTGGTAGCATTCCTCCTTACTCTTGGCTGGTCTTTGATGTCGAGCTGCTT 420
Query 421 AATGTTAAATAA 432
||||||||||||
Sbjct 421 AATGTTAAATAA 432
> Ahg892422 jgi|Araly1|892422|Al_scaffold_0006_418
Length=1017
Score = 459 bits (248), Expect = 1e-128
Identities = 324/360 (90%), Gaps = 8/360 (2%)
Strand=Plus/Plus
Query 1 ATGTCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG 60
||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 661 ATGGCCCCATCTGAATCTGCTAAGAAGAAAGAGAAGACAAGTGAGGAAGCTACAGTGGAG 720
Query 61 -AGTAAAGCCTTTTCTATTAGTGTTGAGAAGCAAACGCCTGACCTAGATG-GCCTCATTG 118
| ||||||| |||||| |||||||||||||||||||||||||| ||||| | |||| ||
Sbjct 721 TA-TAAAGCCATTTCTACTAGTGTTGAGAAGCAAACGCCTGACCCAGATGAG-CTCAATG 778
Query 119 TTGAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAG-CCTGGCAAAAGGGTA 177
|||| || || || ||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 779 TTGACGACTTGTGTATGGGCAACCCCAACGGCAAGAAAGCTG-GTCCTGGCAAAAGGGTT 837
Query 178 AGTGTCCATTATACTGGAAAGCTTCAGGGGAATGGGAAGATTTTCGATTCCACCGTTGGA 237
| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 838 ACTGTCCATTATACTGGAAAGCTTCATGAAAATGGGAAGATTTTCGATTCCACTGTTGGA 897
Query 238 AAATCACGTTATAAGTTTCGTCTAGATGCTGGAAAAGTCATTAAGGGATTGGATGTTGGC 297
||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 898 AAATCTCCTTATAAGTTTCGTCTAGGTGTTGGAAAAGTCATTAAGGGATTGGATGTTGGT 957
Query 298 CTTAATGGAATGCT-TGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGAAATGGGGTA 356
||||||||||| | |||||||||||||||||||||||| |||||||||| | | |||||
Sbjct 958 GTTAATGGAATG-TATGTTGGTGGCAAAAGAAAGCTTACCATTCCTCCAGCATTCGGGTA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15567480312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5