BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05430.1
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487293 jgi|Araly1|487293|fgenesh2_kg.6__427__AT5G05430.1 699 0.0
Ahg892422 jgi|Araly1|892422|Al_scaffold_0006_418 267 7e-71
Ahg892466 jgi|Araly1|892466|Al_scaffold_0006_462 185 2e-46
Ahg938812 jgi|Araly1|938812|scaffold_503003.1 93.5 1e-18
Ahg940479 jgi|Araly1|940479|scaffold_601023.1 65.8 3e-10
> Ahg487293 jgi|Araly1|487293|fgenesh2_kg.6__427__AT5G05430.1
Length=415
Score = 699 bits (378), Expect = 0.0
Identities = 404/416 (97%), Gaps = 4/416 (1%)
Strand=Plus/Plus
Query 61 GACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCGCTTGATGATCTCTAC 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1 GACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCTCTTGATGATGTCTAC 60
Query 121 ACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTTA 120
Query 181 AAATTTGATGAGACTAATACGATTCTCAACAGGTTTTGGTGGCTTCTTCCTCCTCCATTT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATTTGATGAGACTAAGACGATTCTCAACAGGTTTTGGTGGCTTCTTCCTCCTCCATTT 180
Query 241 CTTTCCAACTCATCAGCTCAA--GT-TAACGTGGGAGGATGGAATGTCTCTGTTGAGGCT 297
|||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTCCAATTCATCAGCTCAATCATGTAACGTGGGAGGATGGAATGTCTCTGTTGAGGCT 240
Query 298 TATCCGTATCCGGCACACGCAAACGACTCAGTTAGAGCTGTTGTTCACGGAAAAGACGTA 357
||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 241 TATCCGTATCCGGCAAACGCAAACGACTCAGTTACAGCTATTGTTCACGGAAAAGACGTA 300
Query 358 GCTGATACCGTGACTCAACTTAATGGGAGCTACATGCGAGGACGCAAATTAGCTGTATTG 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GCTGATACCGTGACTCAACTTAATGGGAGCTACATGCGAGGACGCAAATTAGCTGT-TTG 359
Query 418 GGTGACTGCCAAACCGGAAATACCTATACGCCTCATTCGCCGCCGCGTCAATTTCA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGTGACTGCCAAACCGGAAATACCTATACGCCTCATTCGCCGCCGCGTCAATTTCA 415
> Ahg892422 jgi|Araly1|892422|Al_scaffold_0006_418
Length=1017
Score = 267 bits (144), Expect = 7e-71
Identities = 150/153 (98%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 60 TGACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCGCTTGATGATCTCTA 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 36 TGACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCTCTTGATGATGTCTA 95
Query 120 CACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 CACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTT 155
Query 180 AAAATTTGATGAGACTAATACGATTCTCAACAG 212
|||||||||||||||||| ||||||||||||||
Sbjct 156 AAAATTTGATGAGACTAAGACGATTCTCAACAG 188
Score = 267 bits (144), Expect = 7e-71
Identities = 151/154 (98%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 324 CTCAGTTAGAGCTGTTGTTCACGGAAAAGACGTAGCTGATACCGTGACTCAACTTAATGG 383
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CTCAGTTAGAGCTACTGTTCACGGAAAAGACGTAGCTGATACCGTGACTCAACTTAATGG 497
Query 384 GAGCTACATGCGAGGACGCAAATTAGCTGTATTGGGTGACTGCCAAACCGGAAATACCTA 443
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 498 GAGCTACATGCGAGGACGCAAATTAGCTGT-TTGGGTGACTGCCAAACCGGAAATACCTA 556
Query 444 TACGCCTCATTCGCCGCCGCGTCAATTTCAGTAA 477
||||||||||||||||||||||||||||||||||
Sbjct 557 TACGCCTCATTCGCCGCCGCGTCAATTTCAGTAA 590
Score = 106 bits (57), Expect = 2e-22
Identities = 62/64 (97%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 260 AAGTTAACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATCCGGCACACGCAA 319
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 252 AAG-TAACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATCCGGCAAACGCAA 310
Query 320 ACGA 323
||||
Sbjct 311 ACGA 314
> Ahg892466 jgi|Araly1|892466|Al_scaffold_0006_462
Length=510
Score = 185 bits (100), Expect = 2e-46
Identities = 147/169 (87%), Gaps = 5/169 (3%)
Strand=Plus/Plus
Query 266 ACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATC-CGGCACACGCAAACGAC 324
||||||||||||||||||||||||||||||||||||||||| || | | |||||||||
Sbjct 287 ACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATGACGA-AGATGCAAACGAC 345
Query 325 TCAGTTAGAGCTGTTG-TTCACGGAAAAGACGTAGCTGATACCGTGACTCAACTTAATGG 383
|||| | |||| | || || |||||||||||||||| |||| |||||| ||||||||||
Sbjct 346 TCAGCTGGAGC-GATGATTTACGGAAAAGACGTAGCAGATAAGGTGACTGAACTTAATGG 404
Query 384 GAGCTACATGCGAGGACGCAAATTAGCTGTATTGGGTGACTGCCAAACC 432
|||| ||||| |||||| |||||||||||| | |||||||||| |||||
Sbjct 405 GAGCCACATGGGAGGACACAAATTAGCTGT-TCGGGTGACTGCTAAACC 452
> Ahg938812 jgi|Araly1|938812|scaffold_503003.1
Length=563
Score = 93.5 bits (50), Expect = 1e-18
Identities = 57/60 (95%), Gaps = 1/60 (2%)
Strand=Plus/Minus
Query 1 ATGAATCTCAGAGCCGATAAGCCTACCGAAATCAACGTCGGCCAGCTC-GTTTCAGGTAA 59
|||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 66 ATGAATCTCAGAGCCGATAAGCCTACCGGAATCAACGTCGGCCATCTCCGTTTCAGGTAA 7
> Ahg940479 jgi|Araly1|940479|scaffold_601023.1
Length=391
Score = 65.8 bits (35), Expect = 3e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 1 ATGAATCTCAGAGCCGATAAGCCTACCGAAATCAACGT 38
|||||||||||||||||||||||||||| |||||||||
Sbjct 209 ATGAATCTCAGAGCCGATAAGCCTACCGGAATCAACGT 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17284481817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5