BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05450.1
Length=2014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939971 jgi|Araly1|939971|scaffold_600515.1 3049 0.0
Ahg926536 jgi|Araly1|926536|scaffold_202097.1 1064 0.0
Ahg939912 jgi|Araly1|939912|scaffold_600456.1 143 5e-33
> Ahg939971 jgi|Araly1|939971|scaffold_600515.1
Length=1822
Score = 3049 bits (1651), Expect = 0.0
Identities = 1768/1825 (97%), Gaps = 5/1825 (0%)
Strand=Plus/Plus
Query 52 GAGAGGCAGCGGCGGCCGTCATGGATTCATCGGCGAACATAAACAAAGCTCTAACGGAGA 111
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GAGAGGCAGCGGCGGCCGTCATGGATTCATCGGCGAACATAAACAAAGCTTTAACGGAGA 60
Query 112 CGCGTTTCTCCGACCTCGAACCTCCACTCTCCGGAGATATCATTGAGGCTCTTAATCAGT 171
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CGCGTTTCTCCGACCTCGAACCTCCACTCTCCGGAGATATCATTGAGGCGCTTAATCAGT 120
Query 172 CTGATTTCGAGTTCTGCACTCCGGTTCAAGCCGCGACGATCCCTTTACTCTGTAGTTACA 231
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTGATTTCGAGTTCTGCACTCCGGTTCAAGCCGCGACGATTCCTTTACTCTGTAGTTACA 180
Query 232 AGGATGTTGCCGTCGACGCTGCCACTGGTTCTGGAAAAACCCTAGCTTTCGTCGTTCCC- 290
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 181 AGGATGTTGCCGTCGACGCTGCCACCGGTTCTGGAAAAACCCTAGCTTTCGTCG-TCCCT 239
Query 291 CTCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGGTCATGGGG 350
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 CTCGTTGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCATCAGGTCATGGGG 299
Query 351 GTGATTATATCGCCAACGAGAGAGCTATCAACGCAGATATATAATGTCGCACAACCATTT 410
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 300 GTGATTATATCGCCAACAAGAGAGCTATCGACGCAGATATATAATGTGGCACAACCATTT 359
Query 411 GTTTCGACTTTGGCAAATGTGAACTCTGTGTTGCTTGTTGGAGGCCGAGAGGTGAAAGCT 470
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GTTTCGACTTTGGCAAATGTGAACTCTGTGTTACTTGTTGGAGGCCGAGAGGTGAAAGCT 419
Query 471 GACATGAAGATTATTGAAGAAGAAGGATGCAATGTCTTGATTGGTACACCTGGAAGACTT 530
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 420 GACACGAAGATTATTGAAGAAGAAGGATGCAATCTCTTGATTGGTACACCTGGAAGGCTT 479
Query 531 TCTGATATTATGGAACGAATGGAGATTCTGGATTTTCGAAATCTTGAGATTCTTATTC-T 589
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 480 TCAGATATAATGGAACGAATGGAGATTCTCGATTTTCGAAATCTTGAGATTCTTA-TCTT 538
Query 590 AGATGAGGCAGATAGGCTTTTGGAGATGGGGTTCCAAAGGCAGGTGAATTACATTATCTC 649
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGACGAGGCTGATAGGCTTTTGGAGATGGGGTTCCAAAGGCAGGTGAATTACATTATCTC 598
Query 650 ACGCTTGCCAAAGCAGAGGAGGACTGGCCTCTTTTCAGCTACACAAACAGAGGGCGTTGA 709
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 ACGCTTGCCAAAGCAGAGGAGGACTGGTCTCTTTTCAGCTACACAAACAGAGGGCGTTGA 658
Query 710 AGAGCTCGCCAAGGCTGGGCTTAGGAACCCTGTGAGAGTTGAAGTTCGAGCTAAGTCGAA 769
|||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||
Sbjct 659 AGAGCTCGCCAAGGCTGGACTTAGGAACCCTGTGAGAGTTGAAGTTCGAGCTGAGGCGAA 718
Query 770 GTCGGAATCATCCCAGCAATTGACAAACTCGAAAACCCCTTCTGGTCTTCATCTTGAGTA 829
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTCGGAATCTTCCCAGCAATTTACAAACTCGAAAACCCCTTCTGGTCTTCATCTTGAGTA 778
Query 830 TATGGAATGCGAAGCAGATAAAAAATCATCACAACTAGTTGATCTCCTCATCAAGAACAG 889
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 779 TATCGAATGCGAAGCAGATAAGAAATCATCACAACTAGTGGATCTCCTCATCAAGAACAG 838
Query 890 TGATAAAAAGCTTATAGTATTCTTCATGACCTGTGCTTCTGTTGACTACTGGGGACTCGT 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGATAAAAAGCTTATAGTATTCTTCATGACCTGTGCTTCTGTTGACTACTGGGGACTCGT 898
Query 950 ACTTTCAAAAATTCCTGCCCTGAAGTCCATATCTTTAATTCCTATCCATGGGGATATGAA 1009
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 ACTTTCAAAAATTCCTGCCCTGAAGTCTATATCTTTAATTCCTATCCATGGGGATATGAA 958
Query 1010 GCAGAATGCAAGAGACAAGGCATTAGCTTCGTTTACTAAAGCATCAAGTGGTGCCCTTCT 1069
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 959 GCAGAATGCAAGAGACAAGGCATTAGCTTCGTTTACTAAAGCATCAAGCGGTGCCCTTCT 1018
Query 1070 GTGCACAGACGTTGCTGCACGTGGACTTGATATTCCAGGCATTGATTATGTTGTTCAGTA 1129
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 GTGCACAGACGTTGCTGCACGTGGACTTGATATTCCAGGCATTGATTATGTAGTTCAGTA 1078
Query 1130 TGATCCCCCACAAGACCCAAATATGTTCAACCACAGGGCCGGCAGAACTGCAAGATTAGG 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 TGATCCCCCACAAGACCCAAATATGTTCAACCACAGGGCCGGCAGAACTGCAAGATTGGG 1138
Query 1190 AAGACAAGGGAGGGCCATTGTGTTTTTACTGCCCAAGGAAGAAGCCTATGTAGAGTTTAT 1249
||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1139 AAGACTAGGGAAGGCCATTGTGTTTTTACTGCCTAAGGAGGAAGCCTATGTAGAGTTTAT 1198
Query 1250 GCGCATAAGAAGAGTCCCTTTGGAAGAGAGAAAATGCTCTGAGGACGCATCCGATGTCAT 1309
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCGCATAAGAAGAGTCCCTCTGGAAGAGAGAAAATGCTCTGAGGACGCATCCGATGTCAT 1258
Query 1310 CCCGATTATACGTTCAGCTGCCATGAAGGACCGAGCAGTGATGGAGAAGGGATTAAAGGC 1369
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 CCCGATCATACGTTCAGCTGCCATGAAGGACCGAGCAGTGTTGGAGAAGGGATTAAAGGC 1318
Query 1370 ATTTGTTTCCTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAA 1429
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATTTGTTTCTTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAA 1378
Query 1430 AGACCTTGAGATTGGAAAGTTAGCCATGGGATATGGCCTCTTGTATCTTCCTTCAATGTC 1489
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGAACTTGAAATTGGAGAGTTAGCCATGGGATATGGCCTCTTGTATCTTCCTTCAATGTC 1438
Query 1490 TGAAGTTAAACAACACAGACTTTCCAGTGAGGGTTTCACACCAGTTGAAGGTGTCAAGTT 1549
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1439 TGAAGTTAAACAACACAGACTTTCCAGTGAGGGTTTCACACCTGTTGAAGGTGTCAAGTT 1498
Query 1550 TGAAGAAATAAAATTCAAGGACAAATATCGGgagaaacaaagacagcaaaacttacaagt 1609
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1499 TGACGAAATAAAATTCAAGGACAAATCTCGGGAGAAACAAAGACAGCAAAACTTACAAGT 1558
Query 1610 aaggaaagagaaacggcaagaagagaaaaaagagaaaggcaagagaaaaagGGTTGATGC 1669
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1559 AAGGAAAGAGAAACGGCAAGAAGAGAAAAGAGAGAAAGGCAAGAGAAAAAGGGTTGATGC 1618
Query 1670 TTCTGCTAGTAATGATCCTAAGAAAGCGTCGAGAAAGTTAACGGGGAAACAAAGACAAAC 1729
| || ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1619 TCCTACTACTAATGATCCTAAGAAAGCGTCGAGAAAGTTAACAGGGAAGCAAAGACAAAC 1678
Query 1730 TATTCAAACTGCTGAAGATGAAGAAGTGATGGATCGAGATTATAAGTTGATGATAAAAGT 1789
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1679 TATTCAAACTGCTGAAGATGAAGAAGTGATGGATCGAGATTATAAGTTAATGATAAAAGT 1738
Query 1790 AAAGAAAGGGTTAATTAAAGAAGATGAATATGAAAGACTTACAGGAGATGATGATTTATT 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 AAAGAAAGGGTTAATTAAAGAAGATGAATATGAAAGACTTACAGGAGATGATGATTTATT 1798
Query 1850 CTGATGAGAAGAAACAAAACCTGCA 1874
|||||||||||||||||| ||||||
Sbjct 1799 CTGATGAGAAGAAACAAA-CCTGCA 1822
> Ahg926536 jgi|Araly1|926536|scaffold_202097.1
Length=1746
Score = 1064 bits (576), Expect = 0.0
Identities = 928/1093 (85%), Gaps = 44/1093 (4%)
Strand=Plus/Plus
Query 801 AAAACCCCTTCTGGTCT-TCATCTTGAGTATATGGAATGCGAAGCAGATAAAAAATCATC 859
||||| ||||||||||| | || ||||||| || ||||||||||||||||||| |||||
Sbjct 674 AAAACGCCTTCTGGTCTGT-ATAGTGAGTATTTGAAATGCGAAGCAGATAAAAAGTCATC 732
Query 860 ACAACTAGTTGATCTCCTCATCAAGAACAGTGATAAAAAGCTTATAGTATTCTTCATGAC 919
||||||||| |||||||| ||| |||||| ||||||||||| | |||||||| |||||
Sbjct 733 ACAACTAGTGGATCTCCTGATCGAGAACAAAAATAAAAAGCTTCTCGTATTCTTTATGAC 792
Query 920 CTGTGCTTCTGTTGACTACTGGGGACTCGTACTTTCAAAAATTCCTGCCCTGAAGTCCAT 979
||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 793 CTGTGCTTCTGTTGATTACTGGGGACTCGTACTTTCAAAAATTCCTACCCTCAAGTCCAT 852
Query 980 ATCTTTAATTCCTATCCATGGGGATATGAAGCAGAATGCAAG-AGACAAGGCATTAGCTT 1038
|| || |||||||||||||| | ||||| |||| ||| | || ||||||||||||||
Sbjct 853 TTCCTTCTTTCCTATCCATGGGAAGATGAATCAGACTGCTCGAAG-CAAGGCATTAGCTT 911
Query 1039 CGTTTACTA-AAGCATCAAGTGGTGCCCTTCTGTGCACAGACGTTGCTGCACGTGGACTT 1097
||||||| | | |||||||| |||| |||||| |||||||| || |||||||| ||||||
Sbjct 912 CGTTTAC-AGAGGCATCAAGCGGTGTCCTTCTATGCACAGATGTCGCTGCACGAGGACTT 970
Query 1098 GATATTCCAGGCATTGATTATGTTGTTCAGTATGATCCCCCACAAGACCCAAATATGTTC 1157
|||||||||||||| ||||| |||||||||||||||||||||||||||||| | | ||
Sbjct 971 GATATTCCAGGCATCGATTACGTTGTTCAGTATGATCCCCCACAAGACCCAGCTGTATTT 1030
Query 1158 AACCACAGGGCCGGCAGAACTGCAAGATTAGG-AAGACAAGGGAGGGCCATTGTGTTTTT 1216
| ||| |||| ||||| ||||||||| | || |||||||||||||||||||||||||||
Sbjct 1031 ATCCATAGGGTTGGCAGGACTGCAAGACT-GGAAAGACAAGGGAGGGCCATTGTGTTTTT 1089
Query 1217 ACTGCCCAAGGAAG-AAGCCTATGTAGAGTTTATGCGCATAAGAAGAGTCCCT-TTGGAA 1274
| ||||||||| || ||| |||||||||||||||||||||||||| || |||| || |
Sbjct 1090 AATGCCCAAGG-AGAAAGACTATGTAGAGTTTATGCGCATAAGAAAAGCCCCTCTT--CA 1146
Query 1275 G-AGAGAAAATGCTCTGAGGACGCATCCGATGTCATCCCGATTATACGTTCAGCT-GCCA 1332
| ||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||
Sbjct 1147 GAAGAGAAAATGCTCTGAGAACGCTTCCGATGTCATCCCGATTATACGTTCA-CTAGCCA 1205
Query 1333 TGAAGGACCGAGCAGTGATGGAGAAGGGATTAAAGGCATTTGTTTCCTTTGTCCGTGCTT 1392
|||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TGAAGGACCGGGAAGTGTTGGAGAAGGGATTAAAGGCATTTGTTTCCTTTGTCCGTGCTT 1265
Query 1393 ATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAAAG-ACCTTGAGATTGGAAAGTTA 1451
||||||||||||||||||||||||||||||| ||||||| || |||| || |||||||||
Sbjct 1266 ATAAGGAGCATCACTGCTCTTTCATTTTCAGTTGGAAAGGAC-TTGAAATCGGAAAGTTA 1324
Query 1452 GCCATGGGATATGGCCTCTTGTATCTTCCTTCAATGTCTGAAGTTAAACAACACAGACTT 1511
||||||||||||||| |||||| | |||||||||| |||||||||| |||| ||||||||
Sbjct 1325 GCCATGGGATATGGCATCTTGTCTTTTCCTTCAATATCTGAAGTTATACAAGACAGACTT 1384
Query 1512 TCCAGTGAGGGTTTCACACCAGTTGAAGGTGTCAAGTTTGAAGAAATAAAATTCAAGGAC 1571
|| || ||||| ||||| || ||||| ||| |||||| || |||||||||||| ||
Sbjct 1385 GACATTGTCGGTTTTACACCTGTCGAAGGCATCACGTTTGAGGACATAAAATTCAAGAAC 1444
Query 1572 AAATATCGGgagaaacaaagacagcaaaacttacaagtaaggaaagagaaacggcaagaa 1631
|||| ||||||||||||||||||||||||||||| || ||||||||| |||| |||| ||
Sbjct 1445 AAATCTCGGGAGAAACAAAGACAGCAAAACTTACTAGCAAGGAAAGAAAAACTGCAACAA 1504
Query 1632 gagaaaaa-agagaaaggcaagagaaaaagGGTTGAT-GCTTCTGCTAGTAATGATCCTA 1689
|| ||| | |||||||||||||| ||| || | || | | | | | | |||| |||
Sbjct 1505 GA-AAAGAGAGAGAAAGGCAAGA-AAAGAGAGA-GAAAGG--CGGTT-G-A-TGATTCTA 1556
Query 1690 AGAAAGCGTCGAGAAAG------TTAACGGGGAAACAAAGACAAACTATTCAAACTGCT- 1742
| |||| |||||||||| |||||| || |||||||||||||| ||||| |||
Sbjct 1557 ACAAAGTGTCGAGAAAGAGAAAGTTAACGAAGAGGCAAAGACAAACTATCCAAACAGCTC 1616
Query 1743 GAAGATGAAGAAGTGATGGATCGAGATTATAAGTTGA-TGATAAAAGTAAAGAAAGGGTT 1801
|| |||||||||| | | || |||||||| ||| | ||| |||| | |||||||| ||
Sbjct 1617 GA-GATGAAGAAGAAACGAATGGAGATTATGGGTT-ACTGAAAAAACTGAAGAAAGG-TT 1673
Query 1802 -AATTAAAGAAGATGAATATG-AAAGACTTACAGGAGATGATGATTTAT-TCTGATGAGA 1858
||||| ||||||||||| || ||| || |||||||| ||||||||| | |||||| |||
Sbjct 1674 CAATTACAGAAGATGAATTTGCAAA-ACGTACAGGAGCTGATGATTT-TGTCTGATAAGA 1731
Query 1859 AGAAACAAAACCT 1871
|| || |||||||
Sbjct 1732 AGCAAGAAAACCT 1744
Score = 497 bits (269), Expect = 1e-139
Identities = 378/432 (88%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 112 CGCGTTTCTCCGACCTCGAACCTCCACTCTCCGGAGATATCATTGAGGCTCTTAATCAGT 171
|||||||||| || ||||||||||| ||||||| ||||||||| ||||| ||| | | ||
Sbjct 87 CGCGTTTCTCTGAACTCGAACCTCCGCTCTCCGAAGATATCATCGAGGCGCTTGACCGGT 146
Query 172 CTGATTTCGAGTTCTGCACTCCGGTTCAAGCCGCGACGATCCCTTTACTCTGTAGTTACA 231
| | |||||||||||||||||||||||| |||| |||||||||||||||||| || |||
Sbjct 147 CCGGTTTCGAGTTCTGCACTCCGGTTCAGGCCGAGACGATCCCTTTACTCTGCAGCCACA 206
Query 232 AGGATGTTGCCGTCGACGCTGCCACTGGTTCTGGAAAAACCCTAGCTTTCGTCGTTCCCC 291
||||||||| ||||||||| || ||||||||||||||||||||||||||| || ||||||
Sbjct 207 AGGATGTTGTCGTCGACGCAGCAACTGGTTCTGGAAAAACCCTAGCTTTCCTCCTTCCCC 266
Query 292 TCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGGTCATGGGGG 351
||||||| || ||||||||||| | ||| | |||||||||||| |||||||| || ||||
Sbjct 267 TCGTAGAGATTCTCCGTCGATCGAACTCCTACCCTCCGAAGCCACACCAGGTTATAGGGG 326
Query 352 TGATTATATCGCCAACGAGAGAGCTATCAACGCAGATATATAATGTCGCACAACCATTTG 411
|||| ||||||||||||||||||||||||||||||||| |||| || ||||| || ||||
Sbjct 327 TGATAATATCGCCAACGAGAGAGCTATCAACGCAGATACATAAGGTGGCACAGCCGTTTG 386
Query 412 TTTCGACTTTGGCAAATGTGAACTCTGTGTTGCTTGTTGGAGGCCGAGAGGTGAAAGCTG 471
| ||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 387 TCTCGACTTTGCCAAATGTGAACTCTGTCCTGCTTGTTGGAGGTCGAGAGGTGGAAGCTG 446
Query 472 ACATGAAGATTATTGAAGAAGAAGGATGC-AATGTCTTGATTGGTACACCTGGAAGACTT 530
||||||| | ||| |||||||||||| || ||| ||||||| || || |||||||| |||
Sbjct 447 ACATGAATACTATCGAAGAAGAAGGA-GCCAATATCTTGATCGGCACGCCTGGAAGGCTT 505
Query 531 TCTGATATTATG 542
|| ||||| |||
Sbjct 506 TCAGATATAATG 517
Score = 156 bits (84), Expect = 7e-37
Identities = 124/142 (87%), Gaps = 8/142 (6%)
Strand=Plus/Plus
Query 629 GCAGGTGAATTACATTATCTCACGCTTGCCAAAGCAGA-GGAGGACTGGCCTCTTTTCAG 687
|||||| ||||||||||| || |||||||||||||| | |||||||||||||||||||||
Sbjct 535 GCAGGTCAATTACATTATATCTCGCTTGCCAAAGCA-ACGGAGGACTGGCCTCTTTTCAG 593
Query 688 CTACACAAACAGAGGGC-GTTGAAGAGCTCGCCAAGGCTGGGCTTAGGAACCCTGTGAGA 746
||||||||||||| | | ||||||||||| ||||||||||| ||||||||| ||| || |
Sbjct 594 CTACACAAACAGAAG-CTGTTGAAGAGCTGGCCAAGGCTGGCCTTAGGAACGCTGAGAAA 652
Query 747 GTTGA-AGTT-CGAGCTAAGTC 766
||| | | || |||||| ||||
Sbjct 653 GTT-ATA-TTGCGAGCTGAGTC 672
> Ahg939912 jgi|Araly1|939912|scaffold_600456.1
Length=470
Score = 143 bits (77), Expect = 5e-33
Identities = 103/115 (90%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 1113 GATTATGTT-GTTCAGTATGATCCC-CCACAAGACCCAAATATGTTCAACCACAGGGCCG 1170
||| ||||| | |||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 328 GATCATGTTCATGCAGTATGATCCCACCTCAAGACCAAAATATGTTCAACCACAGGGCCG 387
Query 1171 GCAGAACTGCAAGATTAGGAAGACAAGGGAGGGCCATTGTGTTTTTACTG-CCCA 1224
||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||
Sbjct 388 GCAGAACTGCAAGGCTGGGAAGACAAAGGAGGGCCATTGTGTTTTTACTGTCCCA 442
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1093 GACTTGATATTCCAGGCATTGATTATGTTGTTCA 1126
|||||||||||||||||||||||||||| |||||
Sbjct 223 GACTTGATATTCCAGGCATTGATTATGTAGTTCA 256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75723407060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5