BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05460.1 Length=2260 Score E Sequences producing significant alignments: (Bits) Value Ahg487338 jgi|Araly1|487338|fgenesh2_kg.6__472__AT5G05460.1 3384 0.0 Ahg903991 jgi|Araly1|903991|Al_scaffold_0003_1119 941 0.0 > Ahg487338 jgi|Araly1|487338|fgenesh2_kg.6__472__AT5G05460.1 Length=2223 Score = 3384 bits (1832), Expect = 0.0 Identities = 2073/2187 (95%), Gaps = 25/2187 (1%) Strand=Plus/Plus Query 11 TATCATCGTCTTCTTCGTCTTTTGCCGTTGACTTGTTTGAATTTTCGCAAA----TC-C- 64 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1 TATCATCGTCTTCTTCGTCTTTTGCCGTTGACTTGTTTGAATTTTCGCAAATCCCTCTCT 60 Query 65 GTCTC-T-A--TCCAACGAAGAAGTCATGTCAGTGGCACCACCAGCTCCAAGTCCTCCAC 120 |||| | | |||||||| |||| ||||| ||||||||||||| || | || |||| Sbjct 61 ATCTCGTGATGTCCAACGACGAAGCCATGTTAGTGGCACCACCA---CC-A--CCACCAC 114 Query 121 CTTTCGATCCGACTAAGCCATCGACACCAATCTCTTTCCCAATCAAAACTCTTCAAGACT 180 |||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||||| Sbjct 115 CTTTCGATCCTACTAAGCCATCAACACCTATCTCCTTCCCTATCAAAACTCTTCAAGACT 174 Query 181 TGAAGTCTCGCTCTTACTTCGATTCCTTTCATTATCCCTTTAACCGTTCCTCCGTACCTC 240 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 175 TGAAGTCTCGCTCTTACTTCGATTCCTTTCATTATCCCTTTAACCGCTCCTCCGTACCTC 234 Query 241 TCCGTCGGAACATTGGCGCGTTGTCGGATCGACCTAGGCTCTTGGTTTGTCATGACATGA 300 ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| Sbjct 235 TCCGTCGGAACATTGGCGCCTTGCCGGATCGATCTAGGCTCTTGGTTTGTCATGACATGA 294 Query 301 AAGGAGGCTACGTCGATGATAAGTGGGTACAAGGATGTGGAAACAACGCTGGTTACGCCA 360 ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 295 AAGGAGGTTACGTTGATGATAAGTGGGTACAAGGATGTGGAAACAACGCCGGTTACGCCA 354 Query 361 TCTGGGATTGGTATTTGATGGACGTTTTCGTTTACTTCTCTCACTCTCTAGTGACTCTTC 420 |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | Sbjct 355 TCTGGGATTGGTATTTGATGGACGTTTTCGTTTACTTCTCACACTCGCTTGTGACTCTGC 414 Query 421 CTCCTCCTTGTTGGACCAACACTGCTCACAGACATGGCGTCAAAGTATTGGGGACTTTCA 480 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 415 CTCCTCCTTGTTGGACCAACACTGCTCACAGACATGGCGTCAAGGTATTGGGGACTTTCA 474 Query 481 TCACAGAATGGGACGAAGGAAAAGCTACCTGCAAAGAGTTGTTGGCCACAAAGGAATCTG 540 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 475 TCACAGAATGGGACGAAGGAAAAGCTACCTGCAAAGAGTTGTTGGCGACAAAGGAGTCTG 534 Query 541 CGCAGATGTATGCAGAGCGTTTGGCTGAACTTGCTGCTGCTCTTGGCTTTGATGGCTGGC 600 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 535 CACAGATGTATGCAGAGCGTTTGGCTGAACTTGCTGCTGCTCTTGGCTTTGATGGGTGGC 594 Query 601 TGATAAATATAGAGAATGTAATAGATGAAGTTCAAATTCCAAATTTGATGGTTTTTGTAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TGATAAATATAGAGAATGTAATAGATGAAGTTCAAATTCCAAATTTGATGGTTTTTGTAA 654 Query 661 GCCATCTAACAAAAGTCATGCATTCATCTGTACCTGGAGGTTTAGTTATATGGTATGATA 720 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 655 GCCATCTAACAAAAGTCATGCATTCATCTGTACCTGGAGGTTTAGTTATATGGTACGATA 714 Query 721 GTGTCACTATTGATGGTCATCTTGCTTGGCAAGATCAGTTAACCGAGAATAATAAACCTT 780 ||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||| Sbjct 715 GTGTCACGGTTGATGGTCAGCTTGCTTGGCAAGATCAGTTAACTGAGAAGAATAAACCTT 774 Query 781 TCTTTGATATATGCGATGGTATATTCATGAACTATACATGGAAGGAGAACTACCCCAAAG 840 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 775 TCTTTGATATATGCGATGGAATATTCATGAACTATACATGGAAGGAGAACTACCCCAAAG 834 Query 841 CATCAGCTGAAATTGCCGGTGATAGAAAATATGATGTCTACATGGGAATAGATGTGTTTG 900 |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 835 CATCAGCTGAAATTTCCGGTGATAGAAAGTATGATGTCTACATGGGAATAGATGTTTTTG 894 Query 901 GTCGGGGAACTTACGGTGGTGGGCAATGGACTGCAAATGTTGCTCTTGATTTGCTGAAGA 960 ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 895 GTCGGGGAACTTATGGTGGTGGACAATGGACTGCAAATGTTGCCCTTGATTTGCTGAAGA 954 Query 961 GCAGTAATGTATCAGCTGCGATATTTGCTCCTGGATGGGTATACGAAACCGAGCAACCCC 1020 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 955 GCAGTAATGTATCAGCTGCGATATTTGCTCCTGGATGGGTCTACGAAACCGAGCAACCAC 1014 Query 1021 CGGATTTTTACACGGCACAAAACAAATGGTGGTCACTTGTTGAGAAGTCATGGGGTATAG 1080 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1015 CGGATTTTTACACGGCACAAAATAAATGGTGGTCACTTGTTGAGAAGTCATGGGGTATAG 1074 Query 1081 TTCAAACATATCCTCAAGTCCTACCTTTCTACTCAGATTTTAATCAGGGCCTTGGTTCTC 1140 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1075 TTCAAAAATATCCTCAAGTCCTACCTTTCTACTCAGATTTTAATCAGGGCCTAGGTTCTC 1134 Query 1141 ATACCTCTCTTGGAGGTCGGAAATTATCAGAAGCTCCCTGGTACAACATCTCATGCCAAA 1200 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1135 ATATCTCTCTTGGAGGTCGGAAATTATCAGAAGCTCCCTGGTACAACATTTCATGCCAAA 1194 Query 1201 GTCTACAGCCATTCCTAGAATTCAATGAAGGAAGGAATTCAGAGACCATTCAGGTCACTG 1260 |||| |||||| |||||||||||||||||||| ||||||||| | ||| || ||||||| Sbjct 1195 GTCTGCAGCCACACCTAGAATTCAATGAAGGAAAGAATTCAGATATCATGCAAGTCACTG 1254 Query 1261 TTGATGGTCGAGAAGCATCTTATAATGGAGGAGGGAACGTCAGTTTCAGAGGAAAACTAA 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 TTGATGGTCGAGAAGCATCTTATAATGGAGGAGGGAACGTCAGTTTCAGAGGAAAACTAA 1314 Query 1321 AGAGAAATGCACATTTCACAGCAAGACTATTCAAACCTCAGCTTCAGCTCTCTGCTGCCC 1380 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| Sbjct 1315 AGAGAAATGCACATTTCACAGCAAGACTCTTCAAACCTCAGCTTCAGTTCTCTGCTTCCC 1374 Query 1381 CAATCTCAATCTTCTTTTCTGTGAAGTCAGATAAAAGATCCGAGCTAAGCATTCTGCTCC 1440 |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1375 CAATATCAATATCCTTTTCTGTGAAGTCAGATAAAAGATCCGAGCTAAGCATTCTGCTCC 1434 Query 1441 ATTTTTCATCTCCTTCACAAGAGAAAAAGTCCATGCTTATGGTGCCAAATGAATCTATCA 1500 ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||| Sbjct 1435 ATTTTTCATCTCCTTCACATGAGACAAAGTCCTTGCTTATGGTGCCAAATGAATCCATCA 1494 Query 1501 ACAGATTTGGCGACATGTTCCTGCCATGTCTTCTCACATCAAAACAGACCACATCCGGTT 1560 |||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1495 ACAGATTTGGTGACATGTTCCTACCATGTGTTCTCACATCAAAACAGACCACATCCGGTT 1554 Query 1561 GGACAGTACACGAAACAAACCTTGTTTTAGATGGGCACACACTGACTGAGATATCTGCCT 1620 |||| || || ||||||||||||||| | ||||||||||||||||||||||| ||||||| Sbjct 1555 GGACGGTGCATGAAACAAACCTTGTTCTGGATGGGCACACACTGACTGAGATCTCTGCCT 1614 Query 1621 TCTGCTCCAGACCAGATGATCTCACAGAAGAAACAAACACACTAGAGTATTTTGCATTGC 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1615 TCTGCTCCAGACCAGATGATCTCACAGAAGAAACAAACACACTAGAGTATTTTGCATTGC 1674 Query 1681 TTGGACATATCTCCATCAAGAGCCAGCAAAAAGCCAAGGTTTATCCTCTGGCGTCATCAT 1740 |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| Sbjct 1675 TTGGACATATCTCCATCAAGAGCCAGCAAAAAACCAAGCTTTTTCCTCTGGCGTCATCAT 1734 Query 1741 GGGTTATAGAGGCTCATCACGTAAAGTTTGTACCGGGTGATTCTGGCTCCAAGACCTTAA 1800 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1735 GGGTTATCGAGGCTCATCACGTAAAGTTTGTACCGGGTGGTTCTGGCTCCAAGACCTTAA 1794 Query 1801 GTTGTAAGCTAGAATGGAGATTGAAGCACCCTGAAGAAGATTCTGTCTTTCCAAAGTACA 1860 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1795 GTTGTAAGCTAGAATGGAGATTGAAGCACCCTGAAGAAGATTCTGTCTTTACAAAGTACA 1854 Query 1861 ATGTATATGCAGAGAATCTGAGTTCGAGTGAGTATAGACCAAGGAAGGTTATGGAAGAAC 1920 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1855 ATGTGTATGCAGAGAATCTGAGTTCGAGTGATTATAGACCAAGGAAGGTTATGGAAGAAC 1914 Query 1921 CAAGAAGCGAGAAAGTGTTTCTTGGAACAGCTCATGTTGATGCTTATTATGTCTCTGAAA 1980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1915 CAAGAAGCGAGAAAGTGTTTCTTGGAACAGCTCATGTTGATGCTTATTATGTCTCTGATC 1974 Query 1981 TGGTCGTTGGATCAGATGTGAAGGGAGTCCGGTTCGTGGTTCAAACCTGTGGTGAAGATG 2040 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1975 TGGTCGTTGGATCAGATGTTAAGGGAGTCCGATTCGTGGTTCAAACCTGTGGTGAAGATG 2034 Query 2041 GTTCATGGCAGGAGTTGGATGCTTCCCCTAACCTTGTGGTTGAAGTAGAGCGTGTGAGTT 2100 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 2035 GTTCATGGCAGGAGTTGGATGCTTCCCCTAACCTTGTGGTTGAAGTAGAACGTCTGAGTT 2094 Query 2101 CAAAGCTTTGTTGTTGTGGGTTGATTTGAATTATGGTTCATTTCC------G-AA--CCT 2151 ||||||||||||||||||||||||||||| ||||||||||||||| | || ||| Sbjct 2095 CAAAGCTTTGTTGTTGTGGGTTGATTTGAGTTATGGTTCATTTCCCAACTTGCAATTCCT 2154 Query 2152 GCGATCTAATAAGACCATTGATGGTTT 2178 |||||||||||||| |||||||||||| Sbjct 2155 GCGATCTAATAAGAGCATTGATGGTTT 2181 > Ahg903991 jgi|Araly1|903991|Al_scaffold_0003_1119 Length=2118 Score = 941 bits (509), Expect = 0.0 Identities = 947/1155 (82%), Gaps = 44/1155 (4%) Strand=Plus/Plus Query 135 AAGCCATCGACACCAATCTCTTTCCCAATCAAAACTCTTCAAGACT-TGAAGTCTCGCTC 193 ||||| ||| ||| || |||||||| |||||| |||||||||| | |||| ||||| || Sbjct 64 AAGCCGTCGTTACCTATATCTTTCCCGATCAAATCTCTTCAAGA-TCTGAAATCTCGTTC 122 Query 194 TTACTTCGATTCCTTTCATTATCC-CTTTAACCGTTCCTCCGTACCTCTCCGTCGGA-AC 251 |||||||| ||||||||| | ||| ||||| || ||| ||||||||||||| | || || Sbjct 123 TTACTTCGTTTCCTTTCACT-TCCAGTTTAATCGCTCCACCGTACCTCTCCGGC-GAGAC 180 Query 252 AT-TGGCG-CGTTGTCGGATCGACCTAGGCTCTTGGTTTGTCATGACATGAAAGGAGGCT 309 | | | | || || |||| || ||| | || || || ||||||||||||||||| | Sbjct 181 -TCCGATGAC-TTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGT 238 Query 310 ACGTCGATGATAAGTGGGTACAAGGATGTGGAAACAACGCTGG-TTACGCCATCTGGGAT 368 | || ||||| ||||||||||||||||||| |||| |||| || || || || ||| || Sbjct 239 ATGTAGATGACAAGTGGGTACAAGGATGTGAAAACGACGCCGGATT-TGCGATTTGGCAT 297 Query 369 TGGTATTTGATGGACGTTTTCGTTTACTTCTCTCACTCTCTAGTGACTCTTCCTCCTCCT 428 ||||||||||||||| |||| |||||||||||||| ||| | || ||||||||||||||| Sbjct 298 TGGTATTTGATGGACATTTTTGTTTACTTCTCTCATTCTTTGGTCACTCTTCCTCCTCCT 357 Query 429 TGTTGGACCAACACTGCTCACAGACATGGCGTCAAAGTATTGGGGACTTTCATCACAGAA 488 || ||||| ||||||||||| || ||||| || ||||||||||||||||||||||||||| Sbjct 358 TGCTGGACTAACACTGCTCATAGGCATGGTGTTAAAGTATTGGGGACTTTCATCACAGAA 417 Query 489 TGGGACGAAGGAAAAGCTACCTGCAAAGAGTTG-TTGGCCACAAAGGAATCTGCGCAGAT 547 ||||| ||||| |||||||||||||||||| || || |||||||| || ||||| ||||| Sbjct 418 TGGGATGAAGGTAAAGCTACCTGCAAAGAGATGCTT-GCCACAAAAGAGTCTGCTCAGAT 476 Query 548 GTATGCAGAGCGTTTGGCTGAACTTGCTGCTGCTCTTGGCTTTGATGGCTGGCTGATAAA 607 |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || Sbjct 477 GTATGCAGAGCGTTTGGCAGAACTTGCTACTGCTCTTGGCTTTGATGGGTGGCTGATTAA 536 Query 608 TATAGAGAATGTA-ATAGATGAAGTTCAAATTCCAAATTTGATGGTTTTTGTAAGCCATC 666 ||||||||||| | |||||||| | || ||||||||||||| || ||||||||||||| Sbjct 537 TATAGAGAATG-ATATAGATGAGGAGCAGATTCCAAATTTGAAGGAATTTGTAAGCCATC 595 Query 667 TAACAAAAGTCATGC------ATTCAT-C-TGTACCTGGAGGTTTAGTTATATGGTATGA 718 ||| ||||||| ||| | || | | | || || | | | | |||||||| Sbjct 596 TAAAAAAAGTCTTGCAAAAAAAGTCTTGCATTTATCTACA-CCTGGGGCGT-TGGTATGA 653 Query 719 TAGTGTCACTATTGATGGTCATCTTGC-TTGGCAAGATCAGTTAACCGAGAAT-AATAAA 776 |||||||||||| ||||| ||||| | ||||||||||| || || ||| | || ||| Sbjct 654 CAGTGTCACTATTCATGGTAATCTT-CAATGGCAAGATCAATTGACTGAG-CTGAACAAA 711 Query 777 CCTTTCTTTGA-TATATGCGATGGTATATTCATGAACTATACATGGAAGGAGAACTACCC 835 ||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 712 CCTTTCTTTGACT-TATGCGATGGAATATTCATGAACTATACATGGAAGGAGAGCTACCC 770 Query 836 CAAAGC-ATCAGCTGAAATTGCCGGTGATAGAAAATAT-GATGTCTACATGGGAATAGAT 893 ||| | |||||||||| ||||||| || ||||| | | || ||||||||||||| ||| Sbjct 771 AAAA-CTATCAGCTGAAGTTGCCGGGGACAGAAAGT-TCGACATCTACATGGGAATTGAT 828 Query 894 GTGTTTGGTCGGGGAACTTACGGTGGTGGGCAATGGACTGCAAATGTTGCTCTTGATTTG 953 || ||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||||||| Sbjct 829 GTCTTTGGCCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTTGATTTG 888 Query 954 CTGAAGAGCAGTAATGTATCAGCTGCGATATTTGCTCCTGGATGGGTATACGAAACCG-A 1012 |||||||| || ||||| |||||||| || ||||||||||||||||| || || || | | Sbjct 889 CTGAAGAGAAGCAATGTGTCAGCTGCCATGTTTGCTCCTGGATGGGTTTATGAGACTGCA 948 Query 1013 GCAACCCCCGGATTTTTACACGGCACAAAACAAATGGTGGTCACTTGTTGAGAAGTCATG 1072 |||||||| ||||| | || || || || |||||||||||| |||| ||||||||||| Sbjct 949 -CAACCCCCCAATTTTCATACAGCTCAGAATAAATGGTGGTCAATTGTCGAGAAGTCATG 1007 Query 1073 GGGTATAGTTCAAACATATCCTCAAGTCCTACCTTTCTACTCAGATTTTAATCAGGGCCT 1132 ||| ||||| ||||| ||||| |||||| | ||||| ||||| ||||| ||||||||| | Sbjct 1008 GGGAATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCGGATTTCAATCAGGGCTT 1067 Query 1133 TGGTT-CTCATACCTCTCTTGGAGGTCGGAAATTATCAGAAGCTCCCTGGTACAACATCT 1191 ||||| | ||| || || | |||||| || | ||||| ||||| ||||||||||| | Sbjct 1068 TGGTTAC-CATGTTTCACTCGAAGGTCGCCAACTGTCAGATGCTCCATGGTACAACATAT 1126 Query 1192 CATGCCAAAGTCTACAGCCAT-TCCTAGAATTCAATGAAGGAAGG-AATTCAGAGACCAT 1249 | ||||||||||| ||||| | || ||||||||||||||| ||| || ||| | ||| Sbjct 1127 CTTGCCAAAGTCTTCAGCC-TCTCTTAGAATTCAATGAAG-AAGACAACAAAGATATCAT 1184 Query 1250 TCAGGTCACTGTTGA 1264 || ||||||||||| Sbjct 1185 CCACGTCACTGTTGA 1199 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85093607330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5