BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05460.1
Length=2260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487338 jgi|Araly1|487338|fgenesh2_kg.6__472__AT5G05460.1 3384 0.0
Ahg903991 jgi|Araly1|903991|Al_scaffold_0003_1119 941 0.0
> Ahg487338 jgi|Araly1|487338|fgenesh2_kg.6__472__AT5G05460.1
Length=2223
Score = 3384 bits (1832), Expect = 0.0
Identities = 2073/2187 (95%), Gaps = 25/2187 (1%)
Strand=Plus/Plus
Query 11 TATCATCGTCTTCTTCGTCTTTTGCCGTTGACTTGTTTGAATTTTCGCAAA----TC-C- 64
||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 TATCATCGTCTTCTTCGTCTTTTGCCGTTGACTTGTTTGAATTTTCGCAAATCCCTCTCT 60
Query 65 GTCTC-T-A--TCCAACGAAGAAGTCATGTCAGTGGCACCACCAGCTCCAAGTCCTCCAC 120
|||| | | |||||||| |||| ||||| ||||||||||||| || | || ||||
Sbjct 61 ATCTCGTGATGTCCAACGACGAAGCCATGTTAGTGGCACCACCA---CC-A--CCACCAC 114
Query 121 CTTTCGATCCGACTAAGCCATCGACACCAATCTCTTTCCCAATCAAAACTCTTCAAGACT 180
|||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||
Sbjct 115 CTTTCGATCCTACTAAGCCATCAACACCTATCTCCTTCCCTATCAAAACTCTTCAAGACT 174
Query 181 TGAAGTCTCGCTCTTACTTCGATTCCTTTCATTATCCCTTTAACCGTTCCTCCGTACCTC 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 175 TGAAGTCTCGCTCTTACTTCGATTCCTTTCATTATCCCTTTAACCGCTCCTCCGTACCTC 234
Query 241 TCCGTCGGAACATTGGCGCGTTGTCGGATCGACCTAGGCTCTTGGTTTGTCATGACATGA 300
||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 235 TCCGTCGGAACATTGGCGCCTTGCCGGATCGATCTAGGCTCTTGGTTTGTCATGACATGA 294
Query 301 AAGGAGGCTACGTCGATGATAAGTGGGTACAAGGATGTGGAAACAACGCTGGTTACGCCA 360
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 295 AAGGAGGTTACGTTGATGATAAGTGGGTACAAGGATGTGGAAACAACGCCGGTTACGCCA 354
Query 361 TCTGGGATTGGTATTTGATGGACGTTTTCGTTTACTTCTCTCACTCTCTAGTGACTCTTC 420
|||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
Sbjct 355 TCTGGGATTGGTATTTGATGGACGTTTTCGTTTACTTCTCACACTCGCTTGTGACTCTGC 414
Query 421 CTCCTCCTTGTTGGACCAACACTGCTCACAGACATGGCGTCAAAGTATTGGGGACTTTCA 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 415 CTCCTCCTTGTTGGACCAACACTGCTCACAGACATGGCGTCAAGGTATTGGGGACTTTCA 474
Query 481 TCACAGAATGGGACGAAGGAAAAGCTACCTGCAAAGAGTTGTTGGCCACAAAGGAATCTG 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 475 TCACAGAATGGGACGAAGGAAAAGCTACCTGCAAAGAGTTGTTGGCGACAAAGGAGTCTG 534
Query 541 CGCAGATGTATGCAGAGCGTTTGGCTGAACTTGCTGCTGCTCTTGGCTTTGATGGCTGGC 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 535 CACAGATGTATGCAGAGCGTTTGGCTGAACTTGCTGCTGCTCTTGGCTTTGATGGGTGGC 594
Query 601 TGATAAATATAGAGAATGTAATAGATGAAGTTCAAATTCCAAATTTGATGGTTTTTGTAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGATAAATATAGAGAATGTAATAGATGAAGTTCAAATTCCAAATTTGATGGTTTTTGTAA 654
Query 661 GCCATCTAACAAAAGTCATGCATTCATCTGTACCTGGAGGTTTAGTTATATGGTATGATA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 GCCATCTAACAAAAGTCATGCATTCATCTGTACCTGGAGGTTTAGTTATATGGTACGATA 714
Query 721 GTGTCACTATTGATGGTCATCTTGCTTGGCAAGATCAGTTAACCGAGAATAATAAACCTT 780
||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 715 GTGTCACGGTTGATGGTCAGCTTGCTTGGCAAGATCAGTTAACTGAGAAGAATAAACCTT 774
Query 781 TCTTTGATATATGCGATGGTATATTCATGAACTATACATGGAAGGAGAACTACCCCAAAG 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCTTTGATATATGCGATGGAATATTCATGAACTATACATGGAAGGAGAACTACCCCAAAG 834
Query 841 CATCAGCTGAAATTGCCGGTGATAGAAAATATGATGTCTACATGGGAATAGATGTGTTTG 900
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 835 CATCAGCTGAAATTTCCGGTGATAGAAAGTATGATGTCTACATGGGAATAGATGTTTTTG 894
Query 901 GTCGGGGAACTTACGGTGGTGGGCAATGGACTGCAAATGTTGCTCTTGATTTGCTGAAGA 960
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 895 GTCGGGGAACTTATGGTGGTGGACAATGGACTGCAAATGTTGCCCTTGATTTGCTGAAGA 954
Query 961 GCAGTAATGTATCAGCTGCGATATTTGCTCCTGGATGGGTATACGAAACCGAGCAACCCC 1020
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 955 GCAGTAATGTATCAGCTGCGATATTTGCTCCTGGATGGGTCTACGAAACCGAGCAACCAC 1014
Query 1021 CGGATTTTTACACGGCACAAAACAAATGGTGGTCACTTGTTGAGAAGTCATGGGGTATAG 1080
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1015 CGGATTTTTACACGGCACAAAATAAATGGTGGTCACTTGTTGAGAAGTCATGGGGTATAG 1074
Query 1081 TTCAAACATATCCTCAAGTCCTACCTTTCTACTCAGATTTTAATCAGGGCCTTGGTTCTC 1140
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1075 TTCAAAAATATCCTCAAGTCCTACCTTTCTACTCAGATTTTAATCAGGGCCTAGGTTCTC 1134
Query 1141 ATACCTCTCTTGGAGGTCGGAAATTATCAGAAGCTCCCTGGTACAACATCTCATGCCAAA 1200
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1135 ATATCTCTCTTGGAGGTCGGAAATTATCAGAAGCTCCCTGGTACAACATTTCATGCCAAA 1194
Query 1201 GTCTACAGCCATTCCTAGAATTCAATGAAGGAAGGAATTCAGAGACCATTCAGGTCACTG 1260
|||| |||||| |||||||||||||||||||| ||||||||| | ||| || |||||||
Sbjct 1195 GTCTGCAGCCACACCTAGAATTCAATGAAGGAAAGAATTCAGATATCATGCAAGTCACTG 1254
Query 1261 TTGATGGTCGAGAAGCATCTTATAATGGAGGAGGGAACGTCAGTTTCAGAGGAAAACTAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTGATGGTCGAGAAGCATCTTATAATGGAGGAGGGAACGTCAGTTTCAGAGGAAAACTAA 1314
Query 1321 AGAGAAATGCACATTTCACAGCAAGACTATTCAAACCTCAGCTTCAGCTCTCTGCTGCCC 1380
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct 1315 AGAGAAATGCACATTTCACAGCAAGACTCTTCAAACCTCAGCTTCAGTTCTCTGCTTCCC 1374
Query 1381 CAATCTCAATCTTCTTTTCTGTGAAGTCAGATAAAAGATCCGAGCTAAGCATTCTGCTCC 1440
|||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CAATATCAATATCCTTTTCTGTGAAGTCAGATAAAAGATCCGAGCTAAGCATTCTGCTCC 1434
Query 1441 ATTTTTCATCTCCTTCACAAGAGAAAAAGTCCATGCTTATGGTGCCAAATGAATCTATCA 1500
||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| ||||
Sbjct 1435 ATTTTTCATCTCCTTCACATGAGACAAAGTCCTTGCTTATGGTGCCAAATGAATCCATCA 1494
Query 1501 ACAGATTTGGCGACATGTTCCTGCCATGTCTTCTCACATCAAAACAGACCACATCCGGTT 1560
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1495 ACAGATTTGGTGACATGTTCCTACCATGTGTTCTCACATCAAAACAGACCACATCCGGTT 1554
Query 1561 GGACAGTACACGAAACAAACCTTGTTTTAGATGGGCACACACTGACTGAGATATCTGCCT 1620
|||| || || ||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 1555 GGACGGTGCATGAAACAAACCTTGTTCTGGATGGGCACACACTGACTGAGATCTCTGCCT 1614
Query 1621 TCTGCTCCAGACCAGATGATCTCACAGAAGAAACAAACACACTAGAGTATTTTGCATTGC 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TCTGCTCCAGACCAGATGATCTCACAGAAGAAACAAACACACTAGAGTATTTTGCATTGC 1674
Query 1681 TTGGACATATCTCCATCAAGAGCCAGCAAAAAGCCAAGGTTTATCCTCTGGCGTCATCAT 1740
|||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 1675 TTGGACATATCTCCATCAAGAGCCAGCAAAAAACCAAGCTTTTTCCTCTGGCGTCATCAT 1734
Query 1741 GGGTTATAGAGGCTCATCACGTAAAGTTTGTACCGGGTGATTCTGGCTCCAAGACCTTAA 1800
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1735 GGGTTATCGAGGCTCATCACGTAAAGTTTGTACCGGGTGGTTCTGGCTCCAAGACCTTAA 1794
Query 1801 GTTGTAAGCTAGAATGGAGATTGAAGCACCCTGAAGAAGATTCTGTCTTTCCAAAGTACA 1860
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1795 GTTGTAAGCTAGAATGGAGATTGAAGCACCCTGAAGAAGATTCTGTCTTTACAAAGTACA 1854
Query 1861 ATGTATATGCAGAGAATCTGAGTTCGAGTGAGTATAGACCAAGGAAGGTTATGGAAGAAC 1920
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1855 ATGTGTATGCAGAGAATCTGAGTTCGAGTGATTATAGACCAAGGAAGGTTATGGAAGAAC 1914
Query 1921 CAAGAAGCGAGAAAGTGTTTCTTGGAACAGCTCATGTTGATGCTTATTATGTCTCTGAAA 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 CAAGAAGCGAGAAAGTGTTTCTTGGAACAGCTCATGTTGATGCTTATTATGTCTCTGATC 1974
Query 1981 TGGTCGTTGGATCAGATGTGAAGGGAGTCCGGTTCGTGGTTCAAACCTGTGGTGAAGATG 2040
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1975 TGGTCGTTGGATCAGATGTTAAGGGAGTCCGATTCGTGGTTCAAACCTGTGGTGAAGATG 2034
Query 2041 GTTCATGGCAGGAGTTGGATGCTTCCCCTAACCTTGTGGTTGAAGTAGAGCGTGTGAGTT 2100
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2035 GTTCATGGCAGGAGTTGGATGCTTCCCCTAACCTTGTGGTTGAAGTAGAACGTCTGAGTT 2094
Query 2101 CAAAGCTTTGTTGTTGTGGGTTGATTTGAATTATGGTTCATTTCC------G-AA--CCT 2151
||||||||||||||||||||||||||||| ||||||||||||||| | || |||
Sbjct 2095 CAAAGCTTTGTTGTTGTGGGTTGATTTGAGTTATGGTTCATTTCCCAACTTGCAATTCCT 2154
Query 2152 GCGATCTAATAAGACCATTGATGGTTT 2178
|||||||||||||| ||||||||||||
Sbjct 2155 GCGATCTAATAAGAGCATTGATGGTTT 2181
> Ahg903991 jgi|Araly1|903991|Al_scaffold_0003_1119
Length=2118
Score = 941 bits (509), Expect = 0.0
Identities = 947/1155 (82%), Gaps = 44/1155 (4%)
Strand=Plus/Plus
Query 135 AAGCCATCGACACCAATCTCTTTCCCAATCAAAACTCTTCAAGACT-TGAAGTCTCGCTC 193
||||| ||| ||| || |||||||| |||||| |||||||||| | |||| ||||| ||
Sbjct 64 AAGCCGTCGTTACCTATATCTTTCCCGATCAAATCTCTTCAAGA-TCTGAAATCTCGTTC 122
Query 194 TTACTTCGATTCCTTTCATTATCC-CTTTAACCGTTCCTCCGTACCTCTCCGTCGGA-AC 251
|||||||| ||||||||| | ||| ||||| || ||| ||||||||||||| | || ||
Sbjct 123 TTACTTCGTTTCCTTTCACT-TCCAGTTTAATCGCTCCACCGTACCTCTCCGGC-GAGAC 180
Query 252 AT-TGGCG-CGTTGTCGGATCGACCTAGGCTCTTGGTTTGTCATGACATGAAAGGAGGCT 309
| | | | || || |||| || ||| | || || || ||||||||||||||||| |
Sbjct 181 -TCCGATGAC-TTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGT 238
Query 310 ACGTCGATGATAAGTGGGTACAAGGATGTGGAAACAACGCTGG-TTACGCCATCTGGGAT 368
| || ||||| ||||||||||||||||||| |||| |||| || || || || ||| ||
Sbjct 239 ATGTAGATGACAAGTGGGTACAAGGATGTGAAAACGACGCCGGATT-TGCGATTTGGCAT 297
Query 369 TGGTATTTGATGGACGTTTTCGTTTACTTCTCTCACTCTCTAGTGACTCTTCCTCCTCCT 428
||||||||||||||| |||| |||||||||||||| ||| | || |||||||||||||||
Sbjct 298 TGGTATTTGATGGACATTTTTGTTTACTTCTCTCATTCTTTGGTCACTCTTCCTCCTCCT 357
Query 429 TGTTGGACCAACACTGCTCACAGACATGGCGTCAAAGTATTGGGGACTTTCATCACAGAA 488
|| ||||| ||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct 358 TGCTGGACTAACACTGCTCATAGGCATGGTGTTAAAGTATTGGGGACTTTCATCACAGAA 417
Query 489 TGGGACGAAGGAAAAGCTACCTGCAAAGAGTTG-TTGGCCACAAAGGAATCTGCGCAGAT 547
||||| ||||| |||||||||||||||||| || || |||||||| || ||||| |||||
Sbjct 418 TGGGATGAAGGTAAAGCTACCTGCAAAGAGATGCTT-GCCACAAAAGAGTCTGCTCAGAT 476
Query 548 GTATGCAGAGCGTTTGGCTGAACTTGCTGCTGCTCTTGGCTTTGATGGCTGGCTGATAAA 607
|||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 477 GTATGCAGAGCGTTTGGCAGAACTTGCTACTGCTCTTGGCTTTGATGGGTGGCTGATTAA 536
Query 608 TATAGAGAATGTA-ATAGATGAAGTTCAAATTCCAAATTTGATGGTTTTTGTAAGCCATC 666
||||||||||| | |||||||| | || ||||||||||||| || |||||||||||||
Sbjct 537 TATAGAGAATG-ATATAGATGAGGAGCAGATTCCAAATTTGAAGGAATTTGTAAGCCATC 595
Query 667 TAACAAAAGTCATGC------ATTCAT-C-TGTACCTGGAGGTTTAGTTATATGGTATGA 718
||| ||||||| ||| | || | | | || || | | | | ||||||||
Sbjct 596 TAAAAAAAGTCTTGCAAAAAAAGTCTTGCATTTATCTACA-CCTGGGGCGT-TGGTATGA 653
Query 719 TAGTGTCACTATTGATGGTCATCTTGC-TTGGCAAGATCAGTTAACCGAGAAT-AATAAA 776
|||||||||||| ||||| ||||| | ||||||||||| || || ||| | || |||
Sbjct 654 CAGTGTCACTATTCATGGTAATCTT-CAATGGCAAGATCAATTGACTGAG-CTGAACAAA 711
Query 777 CCTTTCTTTGA-TATATGCGATGGTATATTCATGAACTATACATGGAAGGAGAACTACCC 835
||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 712 CCTTTCTTTGACT-TATGCGATGGAATATTCATGAACTATACATGGAAGGAGAGCTACCC 770
Query 836 CAAAGC-ATCAGCTGAAATTGCCGGTGATAGAAAATAT-GATGTCTACATGGGAATAGAT 893
||| | |||||||||| ||||||| || ||||| | | || ||||||||||||| |||
Sbjct 771 AAAA-CTATCAGCTGAAGTTGCCGGGGACAGAAAGT-TCGACATCTACATGGGAATTGAT 828
Query 894 GTGTTTGGTCGGGGAACTTACGGTGGTGGGCAATGGACTGCAAATGTTGCTCTTGATTTG 953
|| ||||| ||||| ||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 829 GTCTTTGGCCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTTGATTTG 888
Query 954 CTGAAGAGCAGTAATGTATCAGCTGCGATATTTGCTCCTGGATGGGTATACGAAACCG-A 1012
|||||||| || ||||| |||||||| || ||||||||||||||||| || || || | |
Sbjct 889 CTGAAGAGAAGCAATGTGTCAGCTGCCATGTTTGCTCCTGGATGGGTTTATGAGACTGCA 948
Query 1013 GCAACCCCCGGATTTTTACACGGCACAAAACAAATGGTGGTCACTTGTTGAGAAGTCATG 1072
|||||||| ||||| | || || || || |||||||||||| |||| |||||||||||
Sbjct 949 -CAACCCCCCAATTTTCATACAGCTCAGAATAAATGGTGGTCAATTGTCGAGAAGTCATG 1007
Query 1073 GGGTATAGTTCAAACATATCCTCAAGTCCTACCTTTCTACTCAGATTTTAATCAGGGCCT 1132
||| ||||| ||||| ||||| |||||| | ||||| ||||| ||||| ||||||||| |
Sbjct 1008 GGGAATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCGGATTTCAATCAGGGCTT 1067
Query 1133 TGGTT-CTCATACCTCTCTTGGAGGTCGGAAATTATCAGAAGCTCCCTGGTACAACATCT 1191
||||| | ||| || || | |||||| || | ||||| ||||| ||||||||||| |
Sbjct 1068 TGGTTAC-CATGTTTCACTCGAAGGTCGCCAACTGTCAGATGCTCCATGGTACAACATAT 1126
Query 1192 CATGCCAAAGTCTACAGCCAT-TCCTAGAATTCAATGAAGGAAGG-AATTCAGAGACCAT 1249
| ||||||||||| ||||| | || ||||||||||||||| ||| || ||| | |||
Sbjct 1127 CTTGCCAAAGTCTTCAGCC-TCTCTTAGAATTCAATGAAG-AAGACAACAAAGATATCAT 1184
Query 1250 TCAGGTCACTGTTGA 1264
|| |||||||||||
Sbjct 1185 CCACGTCACTGTTGA 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85093607330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5