BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05470.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939973 jgi|Araly1|939973|scaffold_600517.1 1803 0.0
Ahg349833 jgi|Araly1|349833|fgenesh1_pg.C_scaffold_6000426 628 2e-179
Ahg487340 jgi|Araly1|487340|fgenesh2_kg.6__474__AT5G05480.1 294 9e-79
> Ahg939973 jgi|Araly1|939973|scaffold_600517.1
Length=1090
Score = 1803 bits (976), Expect = 0.0
Identities = 1053/1091 (97%), Gaps = 2/1091 (0%)
Strand=Plus/Plus
Query 102 TTCTCAAGAATCTCATAACCATGGCGAATCCTGCTCCGAATCTAGAATGTCGTATGTACG 161
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1 TTCTCAAGAATCTCATAACCATGGCGAATCCCGCACCGAATCTGGAATGTCGTATGTACG 60
Query 162 AATCGAGATACCCTGATGTAGACATGGCGGTGATGATTCAGGTGAAGACCATCGCTGACA 221
|||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 61 AATCCAAATACCCTGATGTAGACATGGCGGTGATGATCCAGGTGAAGAACATCGCTGACA 120
Query 222 TGGGAGCTTACGTATCTCTCCTTGAATACAACAACATCGAAGGAATGATCCTGTTCTCCG 281
||||||||||||| ||||| ||||| |||||| |||| |||||||||||||| ||||| |
Sbjct 121 TGGGAGCTTACGTCTCTCTACTTGAGTACAACGACATTGAAGGAATGATCCTATTCTCTG 180
Query 282 AGCTCTCTCGCCGTCGGATTCGTAGTATCAGTAGCTTAATCAAGGTCGGTCGTACCGAGC 341
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 181 AGCTCTCTCGCCGTCGGATTCGTAGTATCAGTAGCTTAATCAAGGTCGGTCGGATCGAGC 240
Query 342 CTGTTATGGTCCTTCGTGTCGATAGAGAGAGAGGTTACATTGATCTCAGTAAACGTAGGG 401
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 241 CTGTAATGGTCCTTCGTGTCGATAGAGAGAGAGGTTACATTGATCTTAGTAAGCGTAGGG 300
Query 402 TTAGTGATGAGGACAAAGAGGCTTGTGAGGAGAGGTATAATAAGAGCAAGCTTGTTCACT 461
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TTAGTGATGAGGACAAAGGGGCTTGTGAGGAGAGGTTTAATAAGAGCAAGCTTGTTCACT 360
Query 462 CTATCATGCGTCATGTTGCTGAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTAAACA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTATCATGCGTCATGTTGCTGAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTAAACA 420
Query 522 TCGGTTGGCCATTGTATAAGAAGCATGGACATGCTTTTGAGGCTTTCAAAATTGTTGTCA 581
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGGCTGGCCATTGTATAAGAAGCATGGACATGCTTTTGAGGCTTTCAAAATTGTTGTCA 480
Query 582 CTGATCCTGATTCAGTTTTCGATGCTCTTACCCGAGAAGTTAAAGAAACTGGACCTGATG 641
||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 481 CTGATCCTGATTCGGTTTTCAATGCTCTTACCCGAGAAGTTAAAGAAACAGGACCTGATG 540
Query 642 GTGTGGAGGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTGGAGGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGA 600
Query 702 AGGACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTGATATTGAATTGA 761
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTGATATTGAATTGA 660
Query 762 AGTGTTTTCAGTTTGATGGAGTTCTCCACATCAAGGAAGCCATGAAGAAGGCAGAGGCTG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGTGTTTTCAGTTTGATGGAGTTCTCCACATCAAGGAAGCCATGAAGAAGGCAGAGGCTG 720
Query 822 TAGGTACTGATGATTGTCCAGTCAAAATCAAGCTCGTTGCTCCACCACTTTATGTACTCA 881
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 AAGGTAGTGATGATTGTCCAGTCAAAATCAAGCTTGTTGCTCCACCACTTTATGTACTCA 780
Query 882 CAACTCACACCCATT-ACAAGGAAAAAGGAATAGTGACTCTGAATAAAGCAATTGAAGCA 940
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAACTCACACCC-TTGACAAGGAAAAAGGAATAGTGACTCTGAATAAAGCAATTGAAGCA 839
Query 941 TGCATTACTGCAATTGAGGAACACAAGGGTAAACTTGTCGTTAAAGAAGGTGCTCGTGCG 1000
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 840 TGCATTACTGCAATAGAGGAACAAAAGGGTAAACTTGTTGTTAAAGAAGGTGCTCGTGCG 899
Query 1001 GTGAGTGAGCGTGATGACAAATTGCTTGCTGAGCACATGGCTAAGCTTAGAATGGATAAT 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTGAGTGAGCGTGATGACAAATTGCTTGCTGAGCACATGGCTAAGCTTAGAATGGATAAT 959
Query 1061 GAAGAAATGAGTGGTGATGAGGGAAGCGAAGATGAAGAAGAAGACACTGGAATGGGAGAA 1120
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 960 GAAGAAATCAGTGGTGATGAGGGGAGTGAAGATGAAGAAGAAGACACTGGAATGGGAGAA 1019
Query 1121 GTCGATATCGATGGAGGTAGCGGGATAATTGAATGAACAAAAGCAAAAGCATTGTAACTG 1180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 GTCGATATCGATGGAGGTAGCGGGATAATTGAATGAACAAAAGCAAAAGAATTGTAACTG 1079
Query 1181 CTGTTTCTGCT 1191
|||||||||||
Sbjct 1080 CTGTTTCTGCT 1090
> Ahg349833 jgi|Araly1|349833|fgenesh1_pg.C_scaffold_6000426
Length=465
Score = 628 bits (340), Expect = 2e-179
Identities = 384/406 (95%), Gaps = 0/406 (0%)
Strand=Plus/Plus
Query 122 ATGGCGAATCCTGCTCCGAATCTAGAATGTCGTATGTACGAATCGAGATACCCTGATGTA 181
||||||||||| || |||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 1 ATGGCGAATCCCGCACCGAATCTGGAATGTCGTATGTACGAATCCAAATACCCTGATGTA 60
Query 182 GACATGGCGGTGATGATTCAGGTGAAGACCATCGCTGACATGGGAGCTTACGTATCTCTC 241
||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||
Sbjct 61 GACATGGCGGTGATGATCCAGGTGAAGAACATCGCTGACATGGGAGCTTACGTCTCTCTA 120
Query 242 CTTGAATACAACAACATCGAAGGAATGATCCTGTTCTCCGAGCTCTCTCGCCGTCGGATT 301
||||| |||||| |||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 CTTGAGTACAACGACATTGAAGGAATGATCCTATTCTCTGAGCTCTCTCGCCGTCGGATT 180
Query 302 CGTAGTATCAGTAGCTTAATCAAGGTCGGTCGTACCGAGCCTGTTATGGTCCTTCGTGTC 361
|||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 181 CGTAGTATCAGTAGCTTAATCAAGGTCGGTCGGATCGAGCCTGTAATGGTCCTTCGTGTC 240
Query 362 GATAGAGAGAGAGGTTACATTGATCTCAGTAAACGTAGGGTTAGTGATGAGGACAAAGAG 421
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 241 GATAGAGAGAGAGGTTACATTGATCTTAGTAAGCGTAGGGTTAGTGATGAGGACAAAGGG 300
Query 422 GCTTGTGAGGAGAGGTATAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGCT 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTGTGAGGAGAGGTTTAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGCT 360
Query 482 GAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTAAACATCGGTT 527
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTACACATCGGTT 406
> Ahg487340 jgi|Araly1|487340|fgenesh2_kg.6__474__AT5G05480.1
Length=2073
Score = 294 bits (159), Expect = 9e-79
Identities = 166/169 (98%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 1114 GGGAGAAGTCGATATCGATGGAGGTAGCGGGATAATTGAATGAACAAAAGCAAAAGCATT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GGGAGAAGTCGATATCGATGGAGGTAGCGGGATAATTGAATGAACAAAAGCAAAAGCATT 2014
Query 1174 GTAACTGCTGTTTCTGCTTTAGATCCTACAATTTTGTTTCCCTTTGAGCAAAAACAGTAT 1233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2013 GTAACTGCTGTTTCTGCTTTAGATCCTACAATTTTGTTTCCCTTTGAGCAAAAACAGT-T 1955
Query 1234 TTTTTGTTTGACCCCAAACATGGTTAGTAGTACAAGCATCTCTTATTCA 1282
||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1954 TTTTTGTTTGACCCCGAATATGGTTAGTAGTACAAGCATCTCTTATTCA 1906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5