BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05480.1
Length=2099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487340 jgi|Araly1|487340|fgenesh2_kg.6__474__AT5G05480.1 3037 0.0
Ahg939973 jgi|Araly1|939973|scaffold_600517.1 139 7e-32
> Ahg487340 jgi|Araly1|487340|fgenesh2_kg.6__474__AT5G05480.1
Length=2073
Score = 3037 bits (1644), Expect = 0.0
Identities = 1961/2108 (93%), Gaps = 46/2108 (2%)
Strand=Plus/Plus
Query 3 AAATATAAAAACGCTTTGGTGTTTAATTACGTCCCTTCTCTCTCTCCAGTCTCCATTGAA 62
|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1 AAATGTAAAAACGCTTTGGTGTTTAACCACGTCACTTCTCTCTCTCCAGTCTCCATTGAA 60
Query 63 GTTCGCATCGGCGAGCTCGGAT-A--ATCAAAAACACAGAAGCTATCATGCC--AGA-AA 116
||| ||||||||||||||| || | ||||||||||||||||| |||||||| ||| |
Sbjct 61 GTTTGCATCGGCGAGCTCGAATAATCATCAAAAACACAGAAGCAATCATGCCGGAGATTA 120
Query 117 ATCAAAACGGCGCCGTTAAGTTCTT-CTTCACACTTGCTTTTCTCACTGCTACCGCCGTT 175
| ||||||||||||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct 121 ACCAAAACGGCGCCGTTAAGTTCTTAATT-ACACTTGCTTTTCTCACTGCTACCACTGTT 179
Query 176 TCTCGTCCTTCCTCGCCGGATCGATTCCTTAGATCGGCTTCGACTTGTCTCCGGTCACCG 235
|||| |||||| ||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 180 TCTCTTCCTTCTTCGCCGGATCGATTCCTCAGATCGGCTTCGACTTATCTCCGGTCACCG 239
Query 236 GTCGAGCCTCAGGAGTACGAGGAGCTCAGGCGGCCCCTACCGTCCGATCAGCTAACGCCG 295
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACGAGCCTCAGGAGTATGAGGAGCTCAGGCGGCCCCTACCGTCCGATCAGCTAACGCCG 299
Query 296 TCATGCTCGCATGTCC-TCTTCCGCCATTCATTCGCCAACACCATCAACAGACCTCCTTT 354
|||||||| || |||| || ||||||| ||||| |||||||||||||| |||||||||||
Sbjct 300 TCATGCTCTCACGTCCTTC-TCCGCCACTCATTTGCCAACACCATCAATAGACCTCCTTT 358
Query 355 TACCACTCCATACACTCCCCCTTCCAGCTGCATATCGCCGCCGTGGTCTTAT-GTTGTAC 413
|||||||||||||| ||| ||||||||||| | ||||||||||||||||| | |||||||
Sbjct 359 TACCACTCCATACAGTCCACCTTCCAGCTGTACATCGCCGCCGTGGTCTT-TCGTTGTAC 417
Query 414 TTGACCTACGCGCCGCCTCGAGTGGCGATCAGTACGATCGTATCTCCGGCTTGTGGCTCG 473
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 418 TTGACCTACGCGCCGCCTCGAGTGGTGATCAGTACGATCGTATCTCCGGTTTGTGGCTCG 477
Query 474 GCGGAGTGGAGCTACTTCGCACCAGTACGGCGGAGCCGAGTCCATCCGGAATCTTCTGGA 533
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 478 GCGGAGTGGAGCTACTCCGCACAAGTACGGCGGAGCCGAGTCCATCAGGAATCTTCTGGA 537
Query 534 ATGTTCGGAAAGACGTCTCTAGGTATTCCTCGCTCTTTATGAGATCCGATTTAAATGTCA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGTTCGGAAAGACGTCTCTAGGTATTCCTCGCTCTTTATGAGATCCGATTTAAATGTCA 597
Query 594 CAATGATGCTTGAGAACATAGTCAACGATGTTTACACAGGCATCTATCATATCAATGTCA 653
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 598 CAATGATGCTCGAGAACATAGTCAACGATGTTTACACAGGCATCTATCATATAAATGTCA 657
Query 654 CCCTCATCTTCTACGAATTCAATCCTATTGCGTCAAATTTGAAGATTAGTAACAGATTAG 713
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 658 CCCTCATCTTCTACGAATTCAATCATATTGCGTCAAATTTGAAGATTAATAACAGATTAG 717
Query 714 GGTTTGTGGATTCCCAGAAAAGAGATCAAACCCCTGCGGATTTGATAATTCCGGTATGTG 773
| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| || |||
Sbjct 718 GCTTTGTGGAATCCCAGAGAAGAGATCAAACCCCTGCGGATTTGATAATCCCGATAGGTG 777
Query 774 ACGGAGGGAACAGAGGG-TTCTGGTTCATGATCGAGAACCCCAGAGAAACTTACTCAAAA 832
|||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||
Sbjct 778 CCGGAGGGAACAGAGGGCTT-TGGTTCATGATCGAGAACCCTACAGAAACTTACTCAAAA 836
Query 833 GGAATTCAAATTCCGTCCAACACTCGTCAGATTGTGCTGGAACTATATGTATCGTTCCAT 892
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 837 CGAATTCAAATTCCGTCCAACACTCGTCAGATCGTGCTGGAACTATATGTATCGTTCCAT 896
Query 893 GGAAACGATGAGTTCTGGTATTCAAACCCGCCAAATTCTTATATCAGAACGAACAATCTA 952
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 897 GGAAACGATGAGTTCTGGTATTCAAACCCGCCAAATTCTTACATCAGAACGAACAATCTA 956
Query 953 ACAACCGGGCGTGGCAATGGTGCATACCGGGAAGTTTTTGTTAAGATAGATGGGAGATAC 1012
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 957 GCAACCGGGCGTGGCAATGGTGCGTACCGAGAAGTTTTTGTTAAGATAGACGGGAGATAT 1016
Query 1013 GTGGGATCCGAGGTGCCATTTCCGGTGATCTTTACTGGTGGAATCAATCCCTTGTTCTGG 1072
|||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||
Sbjct 1017 GTGGGATCCGAGGTGCCATTCCCCGTGATCTTTACAGGCGGAATCAATCCCTTGTTCTGG 1076
Query 1073 GAACCAGTTGTAGCAATCGGTGCCTTCAATCTACCTTCCTATGACATGGACTTGACGCCA 1132
||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 1077 GAACCAGTTGTTGCAATCGGTGCATTCAATCTACCTTCCTACGATATGGACTTGACTCCA 1136
Query 1133 TTTCTCGGGTTGCTTTTAGATGGAAAGTCTCATGAGTTTGCGTTTGGGGTCAACGATGGG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1137 TTTCTCGGGTTGCTTTTAGATGGAAAGTCTCATGAGTTTGCGTTTGGGGTCTACGATGGG 1196
Query 1193 ATATCATACTGGCTTGTGGACGCTAATTTGCACCTCTGGTTAGATCACGGGTCTTCGAAT 1252
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATATCATACTGGCTTGTGGACGCAAATTTGCACCTCTGGTTAGATCACGGGTCTTCGAAT 1256
Query 1253 GTTGAAGCTGGGTCTAGACTTTATGATAGCCCGAGTCGGCATATGATGAGACAAGAACAG 1312
||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||
Sbjct 1257 GTTGAAGCTGGGTCTAGACTTTACGATAGCCCGAGTCGACATATGGTGAGACAAGAAAAG 1316
Query 1313 CTTGAACAGCTTGATGGGTCGTTTAAGGTTGAAGCAGAGGTAAGTAGTGAATATGATGGC 1372
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1317 TTTGAACAGCTTGATGGGTCGTTTAGGGTTGAAGCAGAGGTAAGTAGTGAATATGATGGC 1376
Query 1373 TGGGTTAGATCAAGTAAAGGTAATCTGACCACCATGGTCAAGAGCATGTTCAAGGTTGAC 1432
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1377 TGGGTTAGATCATGTAAAGGTAATCTGACCACTATGGTCAAGAGCATGTTCAAGGTTGAC 1436
Query 1433 AGCTTGGTGAGGTTCGAGAAAAACGGAACATACAAGAGGGTTGAGCAGAGAGTGAAGACC 1492
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 1437 AGCTTGGTGAGGTTCGAGAAAAACGGAACATACAAGAGCGTTGAGCAGAGGGTGGAGACA 1496
Query 1493 GAACGGATCGTGGAGGTGACTTCTGAATCGGGTAAACCGGTGAATCGAGTCGTGCACCAG 1552
||||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||||
Sbjct 1497 GAACGGATCGTGGAGGTGACTTCTGAATCCGGTAAACCAGTGAATCGATTTGTGCACCAG 1556
Query 1553 CGGACATATCCTCTTACAGTGATCACTTCTACTCTTAGAGGGTTAACCAACGACAAGGAT 1612
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1557 CGGACATATCCTCTCACAGTGATCACTTCTACTCTTAGAGGGTTAACCAA-G----G-AT 1610
Query 1613 ACGTATATGCTCGTGACGAATGTTTCACACGCCTTGAATGAGACACATTCAGATGGAGAG 1672
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 ACATATATGCTCGTGACAAATGTTTCACACGCCTTGAATGAGACACATTCAGATGGAGAG 1670
Query 1673 GCTTTGATCCAAGTTTATAGCAGACAAGACTCAGAGGGTTGGATGGAGGTTGAAGATCAC 1732
|||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1671 GCTTCGACCCAAGTTTACAATAGACAAGACTCAGAGGGTTGGATGGAGGTTGAAGATCAC 1730
Query 1733 AATGTCTTGGCTGGTGAAGCGAGCACAAAACAGAGTCTTAGCTATATCGATGAATTCAGC 1792
||||||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 1731 AATGTCTTGGCCGGTGAAGCGAGCACAAGACAGAGTCTTAGCTACATCGATGAGTTCAGC 1790
Query 1793 TGTTATTCCCGCACCATCGTTGCGGCTAATGGGGAGATTGCCCAGGACAGTTCAT-CTGA 1851
|||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||| | ||
Sbjct 1791 TGTTATTCCCACACCATCGTTGCGGCCAATGGCGAGATTACCCAGGACAGTTCATTC-GA 1849
Query 1852 TTCTTGTACTTCGTCTTCATTCTCAGAGCTCAACACTATTGAGCAGCTTATCATAACCAA 1911
|||||| ||||||||||||| ||||||||||||||| ||||| | |
Sbjct 1850 TTCTTGCACTTCGTCTTCATCCTCAGAGCTCAACAC-ATTGA--A--T------------ 1892
Query 1912 TGTTATGAAACACTTGTCGTGAATAAGAGATGCTTGTACTACTAACCATGTTTGGGGTCA 1971
| | || |||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1893 -G--A--AA-CACTTGTCTTGAATAAGAGATGCTTGTACTACTAACCATATTCGGGGTCA 1946
Query 1972 AACAAAAAATACTGTTTTTGCTCAAAGGGAAACAAAATTGTAGGATCTAAAGCAGAAACA 2031
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 AACAAAAAA-ACTGTTTTTGCTCAAAGGGAAACAAAATTGTAGGATCTAAAGCAGAAACA 2005
Query 2032 GCAGTTACAATGCTTTTGCTTTTGTTCATTCAATTATCCCGCTACCTCCATCGATATCGA 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 GCAGTTACAATGCTTTTGCTTTTGTTCATTCAATTATCCCGCTACCTCCATCGATATCGA 2065
Query 2092 CTTCTCCC 2099
||||||||
Sbjct 2066 CTTCTCCC 2073
> Ahg939973 jgi|Araly1|939973|scaffold_600517.1
Length=1090
Score = 139 bits (75), Expect = 7e-32
Identities = 77/78 (99%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 2022 AGCAGAAACAGCAGTTACAATGCTTTTGCTTTTGTTCATTCAATTATCCCGCTACCTCCA 2081
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AGCAGAAACAGCAGTTACAATTCTTTTGCTTTTGTTCATTCAATTATCCCGCTACCTCCA 1031
Query 2082 TCGATATCGACTTCTCCC 2099
||||||||||||||||||
Sbjct 1030 TCGATATCGACTTCTCCC 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78961077885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5