BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05490.1 Length=2093 Score E Sequences producing significant alignments: (Bits) Value Ahg325180 jgi|Araly1|325180|fgenesh1_pm.C_scaffold_6000400 3038 0.0 Ahg487340 jgi|Araly1|487340|fgenesh2_kg.6__474__AT5G05480.1 95.3 2e-18 > Ahg325180 jgi|Araly1|325180|fgenesh1_pm.C_scaffold_6000400 Length=1860 Score = 3038 bits (1645), Expect = 0.0 Identities = 1778/1843 (96%), Gaps = 6/1843 (0%) Strand=Plus/Plus Query 167 GCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACATTGCACGCGAA 226 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 18 GCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACGTTGCACGCGAA 77 Query 227 GATCAACCGGAAGAAACTAGATAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAA 286 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 78 GATCAATCGGAAGAAACTAGACAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAA 137 Query 287 TCCGTCGGTTCCGATGGCTCTTAGACTCTCCGGGATTCTTATGGGTGGTGTTGTGATTGT 346 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 138 TCCGTCGGTTCCGATGGCTCTTAGACTCTCTGGGATTCTTATGGGTGGTGTTGTGATTGT 197 Query 347 TTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCTTTCTGGTTGAAATTAA 406 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 198 TTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCCTTCTGGTGGAAATTAA 257 Query 407 TGGAGCTTGGCGCACAAAATCTGTTCCGGATCCCACTTTACTACCTAAAGGAAAAACCCA 466 |||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| Sbjct 258 TGGAGCTTGGCGAACAAAAGCTGTTCCGGATCCCACCTTACTACCTAAAGGAAGAACCCA 317 Query 467 TGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGA 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 TGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGA 377 Query 527 ACAGACTCGTAATGTTCCTAAATTTGGCAATTACATGGATTTTCAGCAGACTTTTATTTC 586 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 378 ACAGACTCGTAATATTCCTAAATATGGCAATTACATGGATTTTCAGCAGACTTTTATTTC 437 Query 587 CATGCGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCA 646 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 CATGAGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCA 497 Query 647 GTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGAC 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 GTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGAC 557 Query 707 CAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACACA 766 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 558 CAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACTCA 617 Query 767 GATGAACTCCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACC 826 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 GATGAACTTCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACC 677 Query 827 TCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCGCCAGGAGCAACA 886 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 678 TCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCTCCACGAGCAACA 737 Query 887 GGAGAATCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGA 946 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 GGAGCGTCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGA 797 Query 947 GGAACACGATAGACCACAACCAGCGAAAAAGAGAGCAAGAAAGACAGCTACTTCAGCGAT 1006 |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 798 GGAACATGATAGACCACAACCAGCAAAAAAAAGAGCAAGAAAGACAGCTACTTCAGCGAT 857 Query 1007 GGATTATGAGCAAACTATTATCGCTGGTCATGTTTACCAGTCATGGCTCCAGGATACTTC 1066 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 858 GGATTATGAGCAGACTATTATCGCTGGTCACGTTTACCAGTCATGGCTCCAGGATACTTC 917 Query 1067 TGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGACATGGA 1126 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 918 TGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGAAATGAA 977 Query 1127 AAGTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAG---G---ACAGTTC 1180 || ||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 978 AATTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAGCATGTGGAAAGTTC 1037 Query 1181 TTACCCGCCTCAGCTTTACCAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATC 1240 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1038 TTACCCGCCTCAGCTTTACGAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATC 1097 Query 1241 ATCTGAATCTCGACATCCTGATCTCCGTGCGGAACAATCTCCAGGGTTTGTTCAGGAGAG 1300 ||||||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 1098 ATCTGAAACTCGACGTCCTGATCTCTGTGCAGAACAATCTCCAGGGTTTGTTCAGGAGAG 1157 Query 1301 AATGCATAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCT 1360 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 AATGCAGAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCT 1217 Query 1361 TGATAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAG 1420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1218 TGGTAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAG 1277 Query 1421 CATGATGGCTGGATCTCGAGCAAGCCCTGAAACTATTAACCGCCAGGCTGCTGATATTAA 1480 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1278 CATGATGGCTGGATCTCGAGCAAGTCCTGAAACTATTAACCGCCAGGCTGCTGATATTAA 1337 Query 1481 TGTCACGCCATTCTATTCTGGAGATGATGTGAGATCCATGCCTAGTACACCATCCGCACG 1540 ||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 1338 TGTCACGCCTTTCTATTCTGGAGACGACGTGAGATCCATGCCTAGCACACCATCCGCACG 1397 Query 1541 TGGAGCAGCTTCAATTAACAACATAGAGATCAGCTCTAAAAGTCGCATGCCCAATAGAAA 1600 ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1398 TGGAGCAGCTTCAGTAAACAACATAGAGATCAGCTCTAAAAGTCGCATGTTTGATAGAAA 1457 Query 1601 AAGACCAAATTCCTCACCAAGAAGAGGACTCGAACCAGTGGCGGAAGAGAGACCGTGGGA 1660 ||| |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1458 AAGGCCAACTTCCTCACCAAGAAGAGGACTCGAACCAGTAGCGGAAGAGAGACCATGGGA 1517 Query 1661 GCACCGTGAATATGAGTTTGAGTTTTCAATGTTACCTGAAAAACGCTTCACAGCCGATAA 1720 ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1518 GCACCGTGAATATGACTTTGAGTTTTCAATATTACCTGAAAAACGTTTCACAGCCGATAA 1577 Query 1721 AGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGA 1780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1578 AGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGA 1637 Query 1781 CGAGATGATAACAGATAGCATCAAAAGTCACCTGAAGACACACTTTGAAACACCTGGAGC 1840 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1638 CGAGAAGATAACAGATAGCATCAAAAGTCATCTGAAGACACACTTTGAAACACCTGGAGC 1697 Query 1841 TCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAA 1900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1698 TCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAA 1757 Query 1901 ACTCTTCTTCCAATCCTGTGTGTTAGCTACTCGCGGAGTCATCAAGGTAAACCAAGCAGA 1960 ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || | Sbjct 1758 ACTCTTCTTCCAATCCTGTGTGTTAGCGACTCGCGGAGTCATTAAGGTAAACCAAACACA 1817 Query 1961 GCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAA 2003 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1818 GCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAA 1860 > Ahg487340 jgi|Araly1|487340|fgenesh2_kg.6__474__AT5G05480.1 Length=2073 Score = 95.3 bits (51), Expect = 2e-18 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 1 AACTTCAATGGAGACTGGAGAGAGAGAAGGGACGTAATTAAACACCAAAGCGTTTTTATA 60 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | Sbjct 63 AACTTCAATGGAGACTGGAGAGAGAGAAGTGACGTGGTTAAACACCAAAGCGTTTTTACA 4 Query 61 TTT 63 ||| Sbjct 3 TTT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78732536415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5