BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05490.1
Length=2093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325180 jgi|Araly1|325180|fgenesh1_pm.C_scaffold_6000400 3038 0.0
Ahg487340 jgi|Araly1|487340|fgenesh2_kg.6__474__AT5G05480.1 95.3 2e-18
> Ahg325180 jgi|Araly1|325180|fgenesh1_pm.C_scaffold_6000400
Length=1860
Score = 3038 bits (1645), Expect = 0.0
Identities = 1778/1843 (96%), Gaps = 6/1843 (0%)
Strand=Plus/Plus
Query 167 GCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACATTGCACGCGAA 226
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 18 GCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACGTTGCACGCGAA 77
Query 227 GATCAACCGGAAGAAACTAGATAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAA 286
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 78 GATCAATCGGAAGAAACTAGACAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAA 137
Query 287 TCCGTCGGTTCCGATGGCTCTTAGACTCTCCGGGATTCTTATGGGTGGTGTTGTGATTGT 346
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 138 TCCGTCGGTTCCGATGGCTCTTAGACTCTCTGGGATTCTTATGGGTGGTGTTGTGATTGT 197
Query 347 TTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCTTTCTGGTTGAAATTAA 406
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 198 TTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCCTTCTGGTGGAAATTAA 257
Query 407 TGGAGCTTGGCGCACAAAATCTGTTCCGGATCCCACTTTACTACCTAAAGGAAAAACCCA 466
|||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||
Sbjct 258 TGGAGCTTGGCGAACAAAAGCTGTTCCGGATCCCACCTTACTACCTAAAGGAAGAACCCA 317
Query 467 TGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGA 377
Query 527 ACAGACTCGTAATGTTCCTAAATTTGGCAATTACATGGATTTTCAGCAGACTTTTATTTC 586
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 378 ACAGACTCGTAATATTCCTAAATATGGCAATTACATGGATTTTCAGCAGACTTTTATTTC 437
Query 587 CATGCGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCA 646
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CATGAGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCA 497
Query 647 GTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGAC 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGAC 557
Query 707 CAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACACA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 558 CAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACTCA 617
Query 767 GATGAACTCCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACC 826
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GATGAACTTCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACC 677
Query 827 TCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCGCCAGGAGCAACA 886
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 678 TCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCTCCACGAGCAACA 737
Query 887 GGAGAATCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGA 946
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GGAGCGTCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGA 797
Query 947 GGAACACGATAGACCACAACCAGCGAAAAAGAGAGCAAGAAAGACAGCTACTTCAGCGAT 1006
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 798 GGAACATGATAGACCACAACCAGCAAAAAAAAGAGCAAGAAAGACAGCTACTTCAGCGAT 857
Query 1007 GGATTATGAGCAAACTATTATCGCTGGTCATGTTTACCAGTCATGGCTCCAGGATACTTC 1066
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 858 GGATTATGAGCAGACTATTATCGCTGGTCACGTTTACCAGTCATGGCTCCAGGATACTTC 917
Query 1067 TGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGACATGGA 1126
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 918 TGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGAAATGAA 977
Query 1127 AAGTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAG---G---ACAGTTC 1180
|| ||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 978 AATTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAGCATGTGGAAAGTTC 1037
Query 1181 TTACCCGCCTCAGCTTTACCAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATC 1240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TTACCCGCCTCAGCTTTACGAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATC 1097
Query 1241 ATCTGAATCTCGACATCCTGATCTCCGTGCGGAACAATCTCCAGGGTTTGTTCAGGAGAG 1300
||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1098 ATCTGAAACTCGACGTCCTGATCTCTGTGCAGAACAATCTCCAGGGTTTGTTCAGGAGAG 1157
Query 1301 AATGCATAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCT 1360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AATGCAGAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCT 1217
Query 1361 TGATAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAG 1420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TGGTAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAG 1277
Query 1421 CATGATGGCTGGATCTCGAGCAAGCCCTGAAACTATTAACCGCCAGGCTGCTGATATTAA 1480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1278 CATGATGGCTGGATCTCGAGCAAGTCCTGAAACTATTAACCGCCAGGCTGCTGATATTAA 1337
Query 1481 TGTCACGCCATTCTATTCTGGAGATGATGTGAGATCCATGCCTAGTACACCATCCGCACG 1540
||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1338 TGTCACGCCTTTCTATTCTGGAGACGACGTGAGATCCATGCCTAGCACACCATCCGCACG 1397
Query 1541 TGGAGCAGCTTCAATTAACAACATAGAGATCAGCTCTAAAAGTCGCATGCCCAATAGAAA 1600
||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1398 TGGAGCAGCTTCAGTAAACAACATAGAGATCAGCTCTAAAAGTCGCATGTTTGATAGAAA 1457
Query 1601 AAGACCAAATTCCTCACCAAGAAGAGGACTCGAACCAGTGGCGGAAGAGAGACCGTGGGA 1660
||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1458 AAGGCCAACTTCCTCACCAAGAAGAGGACTCGAACCAGTAGCGGAAGAGAGACCATGGGA 1517
Query 1661 GCACCGTGAATATGAGTTTGAGTTTTCAATGTTACCTGAAAAACGCTTCACAGCCGATAA 1720
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1518 GCACCGTGAATATGACTTTGAGTTTTCAATATTACCTGAAAAACGTTTCACAGCCGATAA 1577
Query 1721 AGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGA 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGA 1637
Query 1781 CGAGATGATAACAGATAGCATCAAAAGTCACCTGAAGACACACTTTGAAACACCTGGAGC 1840
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1638 CGAGAAGATAACAGATAGCATCAAAAGTCATCTGAAGACACACTTTGAAACACCTGGAGC 1697
Query 1841 TCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAA 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 TCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAA 1757
Query 1901 ACTCTTCTTCCAATCCTGTGTGTTAGCTACTCGCGGAGTCATCAAGGTAAACCAAGCAGA 1960
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |
Sbjct 1758 ACTCTTCTTCCAATCCTGTGTGTTAGCGACTCGCGGAGTCATTAAGGTAAACCAAACACA 1817
Query 1961 GCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAA 2003
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 GCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAA 1860
> Ahg487340 jgi|Araly1|487340|fgenesh2_kg.6__474__AT5G05480.1
Length=2073
Score = 95.3 bits (51), Expect = 2e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 1 AACTTCAATGGAGACTGGAGAGAGAGAAGGGACGTAATTAAACACCAAAGCGTTTTTATA 60
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 63 AACTTCAATGGAGACTGGAGAGAGAGAAGTGACGTGGTTAAACACCAAAGCGTTTTTACA 4
Query 61 TTT 63
|||
Sbjct 3 TTT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78732536415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5