BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05500.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487343 jgi|Araly1|487343|fgenesh2_kg.6__477__AT5G05500.1 1120 0.0
> Ahg487343 jgi|Araly1|487343|fgenesh2_kg.6__477__AT5G05500.1
Length=721
Score = 1120 bits (606), Expect = 0.0
Identities = 686/724 (95%), Gaps = 8/724 (1%)
Strand=Plus/Plus
Query 9 AAGAAGAAGAAGTTTAAGAAGCAGAGTGTATAACAAGTAACATGGACTCAAGAGCCTTAC 68
|||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAAGAAGCTTAAGAAACAGAGGGCATAACAAGTAACATGGACTCAAGAGCCTTAC 60
Query 69 CCTTCTCCGTTCTCGTCATCCTCATTGCTACGGCGGTGTTGGCCAACGCTTAC---Actc 125
|||||||||||||||||| |||||| || | ||||||||| || |||| |||| ||||
Sbjct 61 CCTTCTCCGTTCTCGTCACCCTCATCGCCATGGCGGTGTTTGCTAACGGTTACAGTACTC 120
Query 126 ctcctcctcctcctccAACCACCGCATACCCTGCCGTGAAAACCGTGGAAGCGGCAGTGG 185
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCTCCTCCTCCTCCAACCACAGCATACCCTGCCGTGAAAACCGTGGAAGCGGCAGTGG 180
Query 186 AAGGAATGGTGTACTGTCAATCCTGCGACAAATTCGGATCATGGTCATTGGCCGGAGCAG 245
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 AAGGAATGGTGTACTGTCAATCCTGCGACAAATTCGGATCATGGTCGTTGGCCGGAGCAG 240
Query 246 AAGC-TATAGCCGGAGCTAAAATCAGCATTATCTGCAAGAATCATAGGCAACAAGTGAGT 304
|||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AAGCCT-TAGCCGGAGCTAAAATCAGCATTATCTGCAAGAACCATAGGCAACAAGTGAGT 299
Query 305 TTCTACAAAGTCTTTCGAACTGATTCCTACGGCCATTTCTATGGTGAGCTCAAAGGTTTC 364
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCTACAAAGTCTTTAAAACTGATTCCTACGGCCATTTCTATGGTGAGCTCAAAGGTTTC 359
Query 365 AAGATGACTCCACATTTCTTGGACCATCCTCTTCATTCTTGCCGAGCCAAGCTCGTCTCT 424
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 AAGATGACTCCACATTACTTGGACCATCCTCTTCATTCTTGCCGGGCCAAGCTCGTCTCT 419
Query 425 TCTCCTCGTGAAGACTGCAATCTCTTCTCCAACATTAACAATGCTCTAGATGGAGCTCCA 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 420 TCTCCTCGTGAAGACTGCAATCTCTTCTCCAACATTAACAATGCTCTAGACGGAGCTTCT 479
Query 485 CTCCGATATGAAGAGAAGAGGCTCAAGTGGACTAACTATGAGGCCGTGATTTACGCCGCT 544
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 480 CTCCGGTATGAAGAGAAGAGGCTCAAGTGGACAAACTATGAGGCCGTAATTTACGCCGCT 539
Query 545 GGTCCATTGGCTTTCCGTCCTGACCACTGCCCTGCGACTGCACCACCCACTTACTGATTT 604
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GGTCCATTGGCTTTCCGTCCTGACCACTGCCCCGCGACTGCACCACCCACTTACTGATTT 599
Query 605 GGGTTTTGAAGATCATCATATACTAATTACATAAGACAAtgttattgattt-ttctctat 663
||||| |||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 600 GGGTTGTGAAGATCATCATATACTAATTGTATAAGACAATGTTATTGATTTGTT-TCTAT 658
Query 664 tttgtatctttttggttttatggtttgtcaattgtttgtAAGATGCTGAGTAATATTGTA 723
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 659 TTTGTATCTTTT-GGTTTTATGGTTGGTCAATTGTTTGTAAGAGGCTGAGTAATATTGTA 717
Query 724 ATGG 727
||||
Sbjct 718 ATGG 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5