BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05510.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349820 jgi|Araly1|349820|fgenesh1_pg.C_scaffold_6000413 1458 0.0
> Ahg349820 jgi|Araly1|349820|fgenesh1_pg.C_scaffold_6000413
Length=1437
Score = 1458 bits (789), Expect = 0.0
Identities = 887/934 (95%), Gaps = 8/934 (1%)
Strand=Plus/Plus
Query 514 CAGCGTCAAGAACAAAAACTGTCTGGAAAGCACCACAAGGTTGATGAGAGGCAACAACAT 573
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 511 CAGCGTCAGGAACAAAAACTGTCTGGAAAGCACCACAAGG-T--TGAGAGGCAACAACAT 567
Query 574 GAGCCTGTGTTGAATTTTGTTGATAAAGCCATTGTAGGGAAGCCTGAAGCAGAAAATGCT 633
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 568 GAGCCGGTGTTGAATTTTGTTGATAAAGCCATTGTAGGAAAGCCTGAAGCAGAAAATGCT 627
Query 634 TGCCATCACGGTTTGGTGGATCCCACAATAAACATGAAGGAAGCCATGAATACAATCAAC 693
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 628 TGCCATCACGGTTTGGTGGATCCCACAATAAACATGAAGGAAGCCATGAATTCAATCAAC 687
Query 694 AACATGTTCAAAGAGCCTATAGAAACTGCTCCACTTCAGAGAAGATCACGACAGAGAAGT 753
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 688 AACATGTTCAAAGAGCCTATAGAAATTGCTCCACTTCAGAGAAGATCACGACAGAGAAGT 747
Query 754 CAGAACAAAGAAAATCAAGGATGCAACAATAGCTTTGAGGTTTTTCTGGACGAGAATCTC 813
|||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 748 CAGAACAAAGAAAACCAAGGATGCAACAATAGTTTTGAAGTTTTTGTGGACGAGAATCTC 807
Query 814 GAATGTGAAACAGGGACAAGTGGAAAAGCAAAGACTAGTACTACTCAGTGTGGATCCCAG 873
||| ||||||||||||||||| |||||||||||||| |||||||||| | |||||||||
Sbjct 808 GAAAGTGAAACAGGGACAAGTAGAAAAGCAAAGACTGGTACTACTCA--G-GGATCCCAG 864
Query 874 CCTAATCAAGAGTCCTTTGAGATATTCATTGATGATGAAAACACTGATGAAACTGCGGAT 933
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 865 CCTAATCAAGAGTCCTTTGAGATTTTCATTGATGATGAAAACGCTGATGAAACTGCCGAT 924
Query 934 GAAAATGATGAGGCTGGAAAAGCTTTTGTCTTTCTCCTGCCAAGAGACCATTCACCTGAA 993
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GAAAATGACGAGGCTGGAAAAGCTTTTGTCTTTCTCCTGCCAAGAGACCATTCACCTGAA 984
Query 994 AGCTCTGAAGAAGCAGACAGAAACACTCCTCCTCGGGCTAGATTTAGAGAAGATACAGTT 1053
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 985 AGCTCTGAAGAAGCAGACAGAAACAGTCCTCCTCGAGCTAGATTTAGAGAAGATACAGTT 1044
Query 1054 GTTCGTAGATTTGTTGGTTCAACAATCTCCGATGAGCCTGAAGCAGTTGAAAACGCCTGC 1113
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1045 GTTCATAGATTTGTTGGTTCAACAATCTCCGATGAGCCAGAAGCAGTTGAAAACGCCTGC 1104
Query 1114 CACCATGGCCTTGTTGACCCTACAGTAAACCTAAAGGAAGCTATGGAGGACATAAACAAC 1173
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1105 CACCATGGCCTTGTTGACCCTACAGTCAACCTAAAGGAAGCTATGAAGGACATAAACAAC 1164
Query 1174 ATGTTTGGCGAACCAATCA-ATTTTGTTAGACCCAACCGCTCTAAAAACAAAGGAAAAGC 1232
||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 1165 ATGTTTGGCGAACCAAT-AGATTTTGTTAGACCCAACCGCTCTAAAAACAGAGGAAAAGC 1223
Query 1233 AGTAGTAGAGACAAAACCAAATCCTGCTGCAGGTTTCTCAATACTCGAGGATGATGATGA 1292
||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||
Sbjct 1224 AGTAGTAGAGACAAAACCATATCCTGCTGCAGGTTTCTCAATACTTGAAGATGATGACGA 1283
Query 1293 AGAAGAAGCTGAGCAAGAACATCAAGGGAAGAGCCAGCCGACTCAGAGATTGCCTTCAAA 1352
|||||||||||||||||||| ||||||| || || ||||||||||| || |||||||||
Sbjct 1284 TGAAGAAGCTGAGCAAGAACACCAAGGGACGAACCGGCCGACTCAGATATCGCCTTCAAA 1343
Query 1353 ATCAGATGAGCGCGAACTATTTGAACCAACGGTATGCACAAAAGTAGCCTTGGATGAAAT 1412
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1344 ATCAGATGAGCGCGAACTATTTGAGCCAACGGTGTGCACAAAAGTAGCCTTGGATGAGAT 1403
Query 1413 CAACAAATTGTTTGCAATGCCAATGGACTTCTAA 1446
||||||||||| |||||||||||||||||||||
Sbjct 1404 TAACAAATTGTTCGCAATGCCAATGGACTTCTAA 1437
Score = 804 bits (435), Expect = 0.0
Identities = 469/486 (97%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 31 ATGGCGAAGAACGAGAACGGCTACGAGAATTTGCTGGCTTCATTGATCGTCGACATCAAA 90
|||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1 ATGGCGAAGATCGAGAACGGCTACGAGAATTTTTTGGCTTCAGTGATCGTCGACATCAAA 60
Query 91 TCATACTCTGGAAAAGACCATCTTCTTCCGTGGATCCGAGGTGTTAAGAAGATGAAAGAG 150
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCATACTCTGGAAAAGACCATCTTCTTCCCTGGATCCGAGGTGTTAAGAAGATGAAAGAG 120
Query 151 AGTTTGCCGTCTCAGATATTGAACGAGAAGCTGCCGCGGTTTTTGCAGAAATGTGCAGAG 210
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 AGCTTGCCCACTGAGATATTGAACGAGAAGCTGCCGCGGTTTTTGCAGAAATGTGCACAG 180
Query 211 TCATTTGAATCTGATAAGAGATATAAGAACGATTCGCGGTATATTCGTGTTTGGTTGCAG 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCATTTGAATCTGATAAGAGATATAAGAACGATTCGCGGTATATTCGTGTTTGGTTGCAG 240
Query 271 CTGATGGACTTTGTAGACGATCCAAGAGCTCTTTTAAGAACCATGGAAGCAAAAAGTATA 330
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CTGATGGACTTTGTAGACGATCCAAGAGCCCTTTTAAGAACCATGGAAGCAAAAAGTATA 300
Query 331 GGGACCAAGAGGTCACTCTTCTACCAGGCATATGCTCTCCATTATGAGAAGATGAAGAGA 390
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GGGACCAAGAGGTCACTGTTCTACCAGGCATATGCTCTTCATTATGAGAAGATGAAGAGA 360
Query 391 TTTGAGGATGCTGAGAAAATGTACCGTCTTGGGGTTCAAAACCTTGCAGAACCCATGGAT 450
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TTTGAGGAGGCTGAGAAAATGTACCGTCTTGGGGTGCAAAACCTTGCAGAACCCATGGAT 420
Query 451 GAGTTACAGAAATCATACTTGCAGTTCGTTACTCGCATGGAGAGGCACAAAAAGAAGAAG 510
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 421 GAGTTACAGAAATCATACTTGCAGTTCGTTAGTCGCATGGAGAGGCACAAAAAGAAAAAG 480
Query 511 ACACAG 516
||||||
Sbjct 481 ACACAG 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5