BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05520.1
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487345 jgi|Araly1|487345|fgenesh2_kg.6__479__AT5G05520.1 2820 0.0
> Ahg487345 jgi|Araly1|487345|fgenesh2_kg.6__479__AT5G05520.1
Length=1852
Score = 2820 bits (1527), Expect = 0.0
Identities = 1751/1859 (94%), Gaps = 16/1859 (1%)
Strand=Plus/Plus
Query 1 GGAGGAGCCGTCAAATTGATTTCGCCGATTTGCTCATCTCTGACTCTCAGTTGCTTT-GC 59
|||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 1 GGAGGAGCCGTCAAATTGATTTCGCCGATTTGCTCA----T--CTCTCAGTTGCTTTCCC 54
Query 60 TCCTTCTCATGGAGAATCCGGCGGAGAAACCCGACCCGAATCCATCAAAACCCAAAATCG 119
|||||||||||| ||||||| ||||||||||||| |||| ||| |||| ||| ||| ||
Sbjct 55 TCCTTCTCATGGCGAATCCGACGGAGAAACCCGAACCGATTCCTTCAACACCTAAACCCG 114
Query 120 AATCTGAAGATGAaagagaagaactaggagatattaacggc-gacgaagaagaagaggaa 178
| || |||||||||||||||| |||| ||| ||||||||| || |||||||||||||||
Sbjct 115 AGCCTAAAGATGAAAGAGAAGAGCTAGAAGACATTAACGGCGGA-GAAGAAGAAGAGGAA 173
Query 179 gagtatgaggaagaagaCGATGGGAAACCTCGAACGCGAGAGGATGCAATCGCGGATAGG 238
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 174 GAGTATGAGGGCGAAGACGATGGGAAACCTCGAACGCGAGAGGATGCAATCTCGGATAGG 233
Query 239 ATCAAAGCTGAGTCTCTGTTCCGTCGTATGCGAGCAACTCCGGTCGCTGTGCGTGTTCAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ATCAAAGCTGAGTCTCTGTTCCGTCGTATGCGAGCAACTCCGGTCGCTGTGCGTGTTCAC 293
Query 299 GACGTGATCGTCAAGGGAAACGAGAAGACTAAGGATCATGTCATCGAGGCTGAGGTGGAT 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 294 GACGTGATCGTCAAGGGAAACGAGAAGACTAAGGATCATGTCATCGAGGCTGAGGTTGAT 353
Query 359 GTTGTGAGGCAAGCCACTACGTTGCAGGAGCTTCTCAAAGCCTCTAAGGTTGCCAATTTC 418
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTTTTGAGGCAAGCGACTACGTTGCAGGAGCTTCTCAAAGCCTCTAAGGTTGCCAATTTC 413
Query 419 AATCTACAAGCGCTTGATATCTTCGATTCAGTCAAAATTACGCTTGATTCTGGTCCTCCT 478
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 414 AATCTTCAAGCGCTTGATATCTTCGATGCTGTCAAAATTACGCTTGATTCTGGTCCTCCT 473
Query 479 GAGCTTCCTGGTACCACCAATGTTGTTATCGATGTTGTTGAGAGCAAAAGCCCTATCACC 538
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 474 GAGCTTCCTGGTACCACCAATGTGGTCATCGATGTTGTTGAGAGCAAAAGCCCTTTCACC 533
Query 539 GGTCAAATCGGAACCTTCACTAAAGCAGAGGCTCGGTCATCAAGCCTTGAAGGCTCTTTG 598
|| ||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 534 GGCCAAATCGGAACTTTCACTAAAGCCGAGGCTAGATCATCAAGCCTTGAAGGCTCTTTG 593
Query 599 AAGTACAAGAACATATTTGGGTATGGAGATATCTGGGACGGGTCTCTTGCTTATGGCTGT 658
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 594 AAGTACAAGAACATTTTTGGTTATGGAGATATCTGGGACGGGTCTCTTGCCTATGGCTGT 653
Query 659 GATCACTCTGCAGAGGTCGGCTTGGGGATGTATTTGCCAAGGTTCAGAGGGCGTCCTACT 718
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 654 GATCACTCTACTGAGGTCGGCTTAGGGATGTATTTGCCAAGGTTCAGAGGGCGTCCTACT 713
Query 719 CCATTTACGTCGCGGGTTTACCTTTCTACCCAAGATTGGCTTAAGTTTTCGTCTTATAAA 778
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct 714 CCATTTACGTCGCGGGTATATCTTTCTACCCAAGATTGGCTTAAGTTCTCATCTTATAAA 773
Query 779 GAACGAGCTCTTGGTCTTTCCCTCGGGCTTATCGCTAGCAAGTATCATGAGCTGGCCTAT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GAACGAGCTCTTGGTCTTTCCCTCGGGCTTATCGCTAGCAAGTATCATGAGCTGGCCTAC 833
Query 839 AATATTGCATGGCGTAACCTGATAGACCCATCGCAAATGGCATCAAGATCAATAAGGAGA 898
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AATATTGCATGGCGTAACGTGATAGACCCATCGCAAATGGCATCAAGATCAATAAGGAGA 893
Query 899 CAGCTGGGTCATAATTTGGTTTCTGCTCTGAAGTACACTTTCAAATTTGACCAGAGAAAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CAGCTGGGTCATAATTTGGTTTCTGCTCTGAAGTACACTTTCAAATTTGACCAGAGAAAC 953
Query 959 TCATCTTTGAGGCCAACACGAGGTTACTCTTTCATCTCGACTTCTCAAATAGGTGGTCTT 1018
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 954 TCATCCTTGAGGCCAACACGAGGGTACTCTTTCATCTCTACTTCTCAAATAGGTGGTCTT 1013
Query 1019 GCACCTGATAGTCGAACTCTCCGCTTTTTGCGCCAGGAAATCGACCTTCGATATGCTGTT 1078
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1014 GCGCCTGATAGTCGAACACTCCGCTTTTTGCGCCAGGAAATCGACCTCCGATATGCTGTT 1073
Query 1079 CCACTCGGGTTTTATCGTGCTGCTCTGAACTTTGGTATAGCTGGGGGAATCACATTTCCA 1138
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1074 CCACTCGGGTTTTATCGTGCTGCTCTGAACTTTGGTGTAGCTGGGGGAATCACATTTCCA 1133
Query 1139 TGGGGAAGCGGATACAAGAGCAGAGCTTCTTGTGTACCTGAGAGGTTCTTCTTAGGTGGA 1198
|||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1134 TGGGGAAGCGAATACAAGAGCAAAGCTTCTTGTATACCTGAGAGGTTCTTCTTAGGTGGT 1193
Query 1199 AACATATCGCCTGTGTGTTCTTTGGGAGGACCATCTGCATTATGGGGATTCAAGACTAGG 1258
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1194 AACATATCACCTGTGTGTTCTTTGGGAGGACCATCTGCGTTATGGGGATTCAAGACTAGG 1253
Query 1259 GGATTGGGTCCTAACGAACCAAGGAGGGAAGTACAGGACGATGAGAGTGGTGACACATAT 1318
||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1254 GGATTGGGTCCTAACGAGCCAAGGAGGGAAGTACAAGACGATGAGAGTGGTAACACATAT 1313
Query 1319 GAACGGGATTTTGTGGGAGGAGATGTTGCGGTTACTGCATTTGCAGACCTTTCTTTTGAT 1378
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1314 GAACGGGATTTTGTGGGAGGGGATGTTGCGGTCACTGCATTTGCAGACCTCTCTTTTGAT 1373
Query 1379 TTCCCATTGAAATGGTTCAGAGACAGAGGAATCCACGGACATGTGTTTGCATGTGCCGGG 1438
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1374 TTCCCATTGAAATGGTTCAGAGACAGAGGAATCCATGGTCATGTGTTTGCATGTGCCGGT 1433
Query 1439 AATATGGCGGAATTATCAGAGAACAAGTATAGGAACTTCACAGCTCCAAAGTTGTTGGAG 1498
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1434 AATATGGCGGAATTATCAGAGAACAAGTATAGGAACTTCACTGCTCCAAAGTTCTTGGAG 1493
Query 1499 ACATTCAGAAGCTCAGTTGGTGCAGGAATCGTGGTACCAACTAGTCTATTTCGCATGGAG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 ACATTCAGAAGCTCAGTTGGTGCAGGAATCGTGGTACCAACTAGTCTATTTCGCATGGAG 1553
Query 1559 CTCAACTACTGCCACATACTGAAGAAACAAGAACACGATCGAGCAAAATCTGGATTTTTC 1618
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1554 CTTAACTACTGCCACATACTGAAGAAACAAGAACACGATCGAGCGAAATCTGGATTTTTC 1613
Query 1619 ATGACATTTTCAACATCATCTTAATGCTACTTTTGATGATATCTTAATTTTGGCTTTGCA 1678
|||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||| |||
Sbjct 1614 ATGACATTCTCAACATCATCTTAATGATACCTTTGATGATATCTTAATTGTGGCTC-GCA 1672
Query 1679 CTCACAGTGTCATGGCGGAGTCTTTTG-TTTTGTTT-CCAGGAGCTTTCATTGTTTAGGT 1736
||| ||| ||||||||||| || |||| |||||||| ||| |||||||||||||||| |
Sbjct 1673 CTCGCAGGGTCATGGCGGAATCCTTTGCTTTTGTTTTCCATCAGCTTTCATTGTTTAGTT 1732
Query 1737 TGTTGTTTGGAATTGAAAACTGTGCAAATTTTAGAGAGAGA--GATTACCTGATGTGCGG 1794
| |||||||||||||||| ||||| ||||||||||||||| | |||| | ||||||||
Sbjct 1733 TTTTGTTTGGAATTGAAA-CTGTGAAAATTTTAGAGAGAGCTTGCTTACGTTATGTGCGG 1791
Query 1795 ATTGTTCTTGGGAAGGAGATAGATCAAGAAATAAAAATTAACTAAAGTTGATTTGTTTT 1853
||||||||||||||| |||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1792 ATTGTTCTTGGGAAGAAGATAGATTAA-AAATAAAAATGAACTAAAGTTGATTTGTTTT 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70619314230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5