BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05540.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487347 jgi|Araly1|487347|fgenesh2_kg.6__481__AT5G05540.1 2279 0.0
Ahg323586 jgi|Araly1|323586|fgenesh1_pm.C_scaffold_5001130 320 2e-86
Ahg940302 jgi|Araly1|940302|scaffold_600846.1 198 1e-49
> Ahg487347 jgi|Araly1|487347|fgenesh2_kg.6__481__AT5G05540.1
Length=1534
Score = 2279 bits (1234), Expect = 0.0
Identities = 1448/1549 (93%), Gaps = 24/1549 (2%)
Strand=Plus/Plus
Query 11 gtgAAGTCACGTGACCATTATAGATTAT-GCACGTGTTGTCAATCTGTCTCCTTTACGAG 69
||||||||||||||| |||||||||||| |||||||| ||||||||||| | |||||||
Sbjct 1 GTGAAGTCACGTGACTATTATAGATTATACCACGTGTTATCAATCTGTCT-C-TTACGAG 58
Query 70 GGCGAGCGAGCCGCCGCCGTCAGAAGC-TTCCGTTCTGCTGTCTGAATCGGTCATGGAGG 128
||| |||||| |||||||||||||||| |||| ||| ||||||||||||||| |||||||
Sbjct 59 GGCTAGCGAGTCGCCGCCGTCAGAAGCTTTCCTTTCCGCTGTCTGAATCGGTTATGGAGG 118
Query 129 ACGTGCTAGCCACGGCAGAGGGAGTGGTTTTAGTAAAGCTGGTGAAGGTAGCGCAAAAGC 188
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 119 ACGTGCTAGCCACGGCAGAGGGAGAGGTTTTAGTAAAGCTGGTGAAGTTAGCGCAAAAGC 178
Query 189 TAGGTCTAAAAGGTGAAA-ACGGAACTTGGAAGGAGTTTTTAGATTTTTATGACAAACAG 247
||||| || |||| ||| ||||| | |||||||| ||| |||||||||| |||||||||
Sbjct 179 TAGGTTTACAAGG-CAAACACGGATCATGGAAGGAATTTCTAGATTTTTACGACAAACAG 237
Query 248 CTAGGATCTTCGAGCTTAAGTGATCCTTCAAAGCGGCGCAAAGATGATTTGGTGGCTTTT 307
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 TTAGGATCTTCGAGCTTGAGTGATCCTTCAAAGCGGCGCAAAGATGATTTGGTCGCTTTT 297
Query 308 CTTACTACACTCAAGAAGAAAGAAGATTTGCAGCTGTTGGCTA-AGTCTCTCAAACTCGA 366
||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 298 CTTACTACACTCAAGAAGAAAGAAGATTTGCAGCTGTTGGCTAGGGT-TCTGAAACTCGA 356
Query 367 CAATGATGTTTTTGAGAAATTCAAAAAGAAATCTTTGGATGAGA-CAGCTGAGCAGAGGC 425
||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||
Sbjct 357 CAATGATGTTTTTGAGAAATTCAGAAAGAAATCTCCGGATGAAACCA-CTGAGCAGAGGC 415
Query 426 TAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACG 475
Query 486 CTGAGGATTGGGTTAGAACAGGGCTTGGCAAGAAGAAGATGGAACCGACAAAGATCGAAA 545
| ||||||||||| | |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 476 CCGAGGATTGGGTCATAACAGGGCTTGGGAAGAAAAAGATGGAACCGACCAAGATCGAAA 535
Query 546 TGATTGCCATTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTTGTTAGAG 605
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 536 TGATTGCCATTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTCTCGTTAGAG 595
Query 606 TTGCTGCAGTTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAAC 665
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 596 TTGCTGCAGTTGACCGTGATTTAAAGGTGATTCTTGACGAATTCGTGAAACCGAATCAAC 655
Query 666 CGGTTGTTGACTATAGGACTTTCATTACTGGACTTACTGCTCAAGATCTTGAAAAGGCTA 725
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 CAGTTGTTGACTATAGGACTTTTATTACTGGACTTACTGCTCAAGATCTTGAAAAGGCTA 715
Query 726 CTATATCTGTGGTAGATATACAGGAAAAATTGCTGATGTTTATCTCTGAGGATACAATTT 785
|| |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 716 CTCTATCCGTGGTAGATATACAGGAAAAATTGCTGATGTTTCTCTCAGAGGATACAATTT 775
Query 786 TGGTTGGTCAAAGTTTGAACCATGATCTAAAAGTATTGAAGGTGGATCATGCCAGAGTAA 845
|||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 776 TGGTAGGTCAAAGTTTGAACCATGATCTTAAAGTATTGAAGATGGATCATGCCAGAGTAA 835
Query 846 TTGATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTA 905
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TAGATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTA 895
Query 906 AAAGACCTTCTTTGAATTATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAAG 965
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAAGACCTTCTTTGAATCATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAAG 955
Query 966 GTGTTCCACACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1025
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GTGTTCCCCACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1015
Query 1026 TAGATAATGGAGCAGAGACCTCCGTTCCACTATCTAAAGAGATGTTGGAAGCTGAGAAGT 1085
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TAGAGAATGGAGTAGAGACCTCCGTTCCACTATCTAAAGAGATGTTGGAAGCTGAGAAGT 1075
Query 1086 CAAAGCTCTACCTTCATAGAATCCCTTGCAATGTTCCATATGAAGAGTTAAATGGAGTCG 1145
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1076 CAAAGCTCTACCTCCATAGAATCCCTTGCAATGTCCCATATGAAGAGTTAAATGGAGTTG 1135
Query 1146 TTTCCAGGGATATCCCACATGAAGTTAAGCCGTCGAAAAAACAAGACCGTCACTACTATA 1205
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1136 TTTCCAGGGATATCCCACATGAAGTTAAGCCGTCGAAAAAACAAGATCGTCACTACTATA 1195
Query 1206 GCGCGATTGTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAACATTGCTG 1265
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GCGCAATTGTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAACATTGCTG 1255
Query 1266 GAGACTTTGGAAAGGATTCGAGGGGGTTGTCACAAAAACAGATCTTTCTAGAGCCGAGTT 1325
||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1256 GAGACTTGGGAAAGGATTCGACGGGGTTGTCACAAAAACAGGTCTTTCTAGAGCCGAGTT 1315
Query 1326 CATCAGAACCTAGATTATATGTTCTCGTTCGTAAAATGGTCGAAGATGATTTGGTTGGGG 1385
|||||| ||||||| | || | ||| |||||||||||||||||||||||||||||||||
Sbjct 1316 CATCAGGGCCTAGAT-ACAT-T-CTCATTCGTAAAATGGTCGAAGATGATTTGGTTGGGG 1372
Query 1386 AAGTCA-TAGCAGAGGAGAATAATGCGAGTTCTAAGAAACGGAAGAGAGAAAATCATTCT 1444
||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1373 AAGTCTCT-GCAGAGGAGAAGAATGCGAGTTCTAAGAAACGGAAGAGAGAAAAAGATTCT 1431
Query 1445 AAAGGGACCAGAGATAGACGCAGGTGTAAACCATTGTCC-AGAC-GAAAACAGAGAAGCA 1502
|||| ||||||||| |||||||| |||||||||||| | ||| |||| |||||||||
Sbjct 1432 AAAGAGACCAGAGAGAGACGCAGATGTAAACCATTG-CGTAGAAAGAAA-CAGAGAAGCT 1489
Query 1503 ATGTCAAACGAAGAAGATAATATCAA-GGAAAATCAAGAACTCAAAGCA 1550
|||| || |||||| ||||| ||| ||||||||||||||| ||||||
Sbjct 1490 ATGTGAACCGAAGA---TAATA-CAAAGGAAAATCAAGAACTGAAAGCA 1534
> Ahg323586 jgi|Araly1|323586|fgenesh1_pm.C_scaffold_5001130
Length=1230
Score = 320 bits (173), Expect = 2e-86
Identities = 547/721 (76%), Gaps = 52/721 (7%)
Strand=Plus/Plus
Query 555 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTT-GTTAGAGTTG-CTGC 612
||||||||||||||||||||||||||||||||| ||| | | || |||||||||| | ||
Sbjct 428 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGT-TTAGTTAGAGTTGGC-GC 485
Query 613 AGTTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAACCGG-TTG 671
|| ||||||||||||||||||||||||||||| |||||||||||| | ||| | |||
Sbjct 486 TGTAGACCGTGATTTAAAGGTGATTCTTGATGAATTTGTGAAACCGGA-CAAACATATTG 544
Query 672 TTGACTATAGGACTTTCATTACTGG-ACTTACTGCTCAAGATCTTGAAAAGGCTACTA-T 729
||||||||||||| |||||| || | |||||||| ||||| | ||||| ||||| | |
Sbjct 545 TTGACTATAGGACAGACATTACAGGGA-TTACTGCTGAAGATATCGAAAATGCTAC-ACT 602
Query 730 ATCTGTGGTAGATATACAGGAAAAATTGCTGATGTTTATCTCTGA-GGATACAATTTTGG 788
||||||| |||||||||||||| |||| | ||| | ||| | || ||| |||||||
Sbjct 603 CTCTGTGGCAGATATACAGGAAACGTTGCAGCCCTTTCTTTCT-ACGGGTACGATTTTGG 661
Query 789 TTGGTCAAAGTTTGAACC-ATGATCTAAAAGTATTGAAGGTGGATCATGCCAGAGTAATT 847
| ||||| ||||||||| | ||| | |||| |||||| | |||||| ||| ||||||
Sbjct 662 TAGGTCACAGTTTGAACAGA-GATTTGGAAGTGTTGAAGATAGATCATCCCAAAGTAATC 720
Query 848 GATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTAAA 907
|| ||| ||||||| || | |||| | || || || | ||| | || | || |
Sbjct 721 GACACTGCACTTGTATTCAGGTATTCCAAT-AC---ACGA-AAG-C-TT-A-GA---A-- 766
Query 908 AGACCTTCT-TTGAATTATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAA-G 965
||||||| || || | || ||||||| ||| ||||| || ||||| | |||||| |
Sbjct 767 -GACCTTCACTT-AACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCC-GAAAGACCG 823
Query 966 GTGTTCCACACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1025
| ||||| || ||||||| || || ||||||||||| |||||||||| ||||||| |
Sbjct 824 GCGTTCCTCATGATTGTGTACACGACGCAGAAGCTGCGATGAAACTTGCACTTGCTGTTG 883
Query 1026 TAGATAATGGAGCAGAGACCTCCGTTCCA-CTATCTAAAGAGATGTTGGAAGCTGAGAA- 1083
|||| || ||| || || | | | | | |||||||||||||||||| | ||||||
Sbjct 884 TAGAGAAAAGAGTTGACACAACAAT-CAAACCATCTAAAGAGATGTTGGAGGTTGAGAAA 942
Query 1084 GTCAAAGCTCTACCTTCATAGAATCCCTTGCAATGTTCCATATGAAGAGTTAAATGGAGT 1143
| |||| |||| || |||| ||||||| |||||| |||| ||||||| | | |||
Sbjct 943 G-CAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTGGACCAAGT 1001
Query 1144 -CGTTTCCAGGGA--TATCCCACATGAAGTTAAGCC-GTCGAAAAAACAAG-ACCGTCAC 1198
| | || || | | | | || ||| || |||| | |||||| ||| | || || ||
Sbjct 1002 TC-TCTCT-GGAAAGTTTAC-ACTTGATGTGAAGCAAG-CGAAAACACAGGGACGGT-AC 1056
Query 1199 TACTATAGCGCGATT-GTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAA 1257
|| | | | || ||| ||||||||| ||| ||||||| ||| ||||||||||||||||
Sbjct 1057 TA-T-T-GTGC-ATTTGTTGTTTTTGGTAGTTCAGAAGACGCAGATCAAGCATTTGAAAA 1112
Query 1258 C 1258
|
Sbjct 1113 C 1113
> Ahg940302 jgi|Araly1|940302|scaffold_600846.1
Length=524
Score = 198 bits (107), Expect = 1e-49
Identities = 148/167 (89%), Gaps = 5/167 (3%)
Strand=Plus/Plus
Query 555 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTTGTTAGAGTTGCTGCAG 614
||| ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct 195 TTG-TTGTGAGATGGTTCTTTGTGATGATGGGAGTGAAGCTGTTGTCAGAGTTTCTGCAG 253
Query 615 TTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAACCGGTTGT-T 673
|||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| | |
Sbjct 254 TTGACCGTGATTTAAAGGTGATTCTTGACGAATTTGTGAAACCGAATAAACCAGTT-TCT 312
Query 674 GACTATAGGACTT-TCATTACTGGACTTACTGCTCAAGATCTTGAAA 719
||||| || || | |||| || ||||||||||||||||||||||
Sbjct 313 GACTACAGAACCGATG-TTACCGGGCTTACTGCTCAAGATCTTGAAA 358
Score = 65.8 bits (35), Expect = 1e-09
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 828 TGGATCATGCCAGAGTAATTGATACTTCACTTGTGTTTAAGTAT 871
|||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 392 TGGATCATGCAAGAAAAATTGATACTTCACTTGTGTTTAAGTAT 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5