BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05550.2
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487349 jgi|Araly1|487349|fgenesh2_kg.6__483__AT5G05550.1 1079 0.0
> Ahg487349 jgi|Araly1|487349|fgenesh2_kg.6__483__AT5G05550.1
Length=976
Score = 1079 bits (584), Expect = 0.0
Identities = 672/714 (94%), Gaps = 8/714 (1%)
Strand=Plus/Plus
Query 65 GACGACGCCGCAGTCAAAATCAAGTGTGTCCCACCGACCGCCGTTGGGAAGAGAAGACTG 124
||||||||||||||||||| | |||||||| ||||| || ||| ||||||||||||||||
Sbjct 6 GACGACGCCGCAGTCAAAACCGAGTGTGTCTCACCGTCCACCGGTGGGAAGAGAAGACTG 65
Query 125 GTGGAGTGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGCAATCGTTACGTCAAGCT 184
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 66 GTGGAGCGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGGAATCGTTACGTCAAGCT 125
Query 185 GAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAG 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAG 185
Query 245 ACACGGTGATAACAGCCGTAAGAAGACCGACT-TACAGTGTAAGAACCGGGTCGATACTT 303
|||||||||||| |||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 186 GCACGGTGATAACGGCCGTAAGAAGACCGA-TATACAGTGTAAGAACCGGATCGATACTT 244
Query 304 TGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCGACTTGGCGTTTCTATA 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 245 TGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCTACTTGGCGTTTCTATA 304
Query 364 ACCGCCTCGATGTTCTAATCGGTCCCGTTGTGAAGAAATCGGCTGGCGGAGTTGTCAAAT 423
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 305 ACCGCCTCGATGTTCTAATCGGTCCGGTTGTGAAGAAATCTGCTGGTGGAGTTGTCAAAT 364
Query 424 CAGCGCCTTTTA-AGA----A-TCATCTGAATCCAACTGGATCGAACTCTACTGGAAGCT 477
|||||||||||| | | | |||||||||||| ||||||||||| |||| ||||||||
Sbjct 365 CAGCGCCTTTTATAAACCCTAGTCATCTGAATCCGACTGGATCGAAGTCTAATGGAAGCT 424
Query 478 CTCTTGAAgatgatgatgaggatgatgatgaGGTTGGTGATTGGGAATTCGTTGCTAGGA 537
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 425 CACTTGACGATGATGATGACGATGATGATGAGGTTGGTGATTGGGAATTCGTTGCGAGGA 484
Query 538 AGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCAACGTGTAGGGAACTAGCTA 597
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 485 AGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCGACGTGTAGGGAACTAGTTA 544
Query 598 CGGCGATTCTCAAGTTTGGAGAAGTTTACGAGAGAATTGAAGGGAAGAAGCAACAGATGA 657
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 545 CGGCGATTCTGAAGTTTGGAGAAGTTTACGAGAGAATTGAGGGGAAGAAGCAACAGATGA 604
Query 658 TGATTGAGTTGGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTAGAGTTAAAACGAATGA 717
|| |||| || |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 605 TGCTTGAATTAGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTGGAGTTACAACGAATGA 664
Query 718 ACATGTTGATGGAGATGCAGTTAGAGATTGAGAAATCAAAGCACCGGAAACGCG 771
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 665 ACATGTTGATGGAGATGCAATTAGAGATTGAGAAATCAAAGCACCGGAAACGCG 718
Score = 307 bits (166), Expect = 1e-82
Identities = 230/258 (89%), Gaps = 15/258 (6%)
Strand=Plus/Plus
Query 879 CAGGTAAGCAATTGTAGAATTAGATTGGTGGAGGAAATACCATGGTGAAGCAAAGAGGAG 938
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 728 CAGGTAAGCAATTGTAGAATTAGATTGGTGGAGGAACTACCATGGTGACGCAAAGAGGAA 787
Query 939 TTACTTGAATCTGAAGCTCATTGAA-ATTGGAGGATCCTGTTACTTGTTTTAATCTGTAG 997
|||||||||||||||||||||| || |||||||| ||||||| | ||||||||||
Sbjct 788 TTACTTGAATCTGAAGCTCATT-AACATTGGAGGGTCCTGTT-C------TAATCTGTAG 839
Query 998 GATGGAAGTTAGAGAACTCTTTAGGATGTCTTTGTTTGTTTTCTTCTACTTTCTAGCGTG 1057
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 GATAAAAGTTAGACAACTCTTTAGGATGCCTTTGTTTGTTTTCTTCTACTTTCTAGCGTT 899
Query 1058 TTAG--TGTACATTG--GT-GTACTGGAGCAAATCTTCCTTAACTCTTTAGTAGCTGACA 1112
|||| ||||||||| || ||| |||||||||||||||||||||||| |||| ||||||
Sbjct 900 TTAGGGTGTACATTGTTGTTGTAATGGAGCAAATCTTCCTTAACTCTT-AGTATCTGACA 958
Query 1113 AGTATGATCTACATTTGT 1130
|||||||| ||| |||||
Sbjct 959 AGTATGATGTACTTTTGT 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5