BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05550.2 Length=1207 Score E Sequences producing significant alignments: (Bits) Value Ahg487349 jgi|Araly1|487349|fgenesh2_kg.6__483__AT5G05550.1 1079 0.0 > Ahg487349 jgi|Araly1|487349|fgenesh2_kg.6__483__AT5G05550.1 Length=976 Score = 1079 bits (584), Expect = 0.0 Identities = 672/714 (94%), Gaps = 8/714 (1%) Strand=Plus/Plus Query 65 GACGACGCCGCAGTCAAAATCAAGTGTGTCCCACCGACCGCCGTTGGGAAGAGAAGACTG 124 ||||||||||||||||||| | |||||||| ||||| || ||| |||||||||||||||| Sbjct 6 GACGACGCCGCAGTCAAAACCGAGTGTGTCTCACCGTCCACCGGTGGGAAGAGAAGACTG 65 Query 125 GTGGAGTGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGCAATCGTTACGTCAAGCT 184 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 66 GTGGAGCGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGGAATCGTTACGTCAAGCT 125 Query 185 GAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAG 244 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 CAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAG 185 Query 245 ACACGGTGATAACAGCCGTAAGAAGACCGACT-TACAGTGTAAGAACCGGGTCGATACTT 303 |||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct 186 GCACGGTGATAACGGCCGTAAGAAGACCGA-TATACAGTGTAAGAACCGGATCGATACTT 244 Query 304 TGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCGACTTGGCGTTTCTATA 363 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 245 TGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCTACTTGGCGTTTCTATA 304 Query 364 ACCGCCTCGATGTTCTAATCGGTCCCGTTGTGAAGAAATCGGCTGGCGGAGTTGTCAAAT 423 ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 305 ACCGCCTCGATGTTCTAATCGGTCCGGTTGTGAAGAAATCTGCTGGTGGAGTTGTCAAAT 364 Query 424 CAGCGCCTTTTA-AGA----A-TCATCTGAATCCAACTGGATCGAACTCTACTGGAAGCT 477 |||||||||||| | | | |||||||||||| ||||||||||| |||| |||||||| Sbjct 365 CAGCGCCTTTTATAAACCCTAGTCATCTGAATCCGACTGGATCGAAGTCTAATGGAAGCT 424 Query 478 CTCTTGAAgatgatgatgaggatgatgatgaGGTTGGTGATTGGGAATTCGTTGCTAGGA 537 | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 425 CACTTGACGATGATGATGACGATGATGATGAGGTTGGTGATTGGGAATTCGTTGCGAGGA 484 Query 538 AGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCAACGTGTAGGGAACTAGCTA 597 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 485 AGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCGACGTGTAGGGAACTAGTTA 544 Query 598 CGGCGATTCTCAAGTTTGGAGAAGTTTACGAGAGAATTGAAGGGAAGAAGCAACAGATGA 657 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 545 CGGCGATTCTGAAGTTTGGAGAAGTTTACGAGAGAATTGAGGGGAAGAAGCAACAGATGA 604 Query 658 TGATTGAGTTGGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTAGAGTTAAAACGAATGA 717 || |||| || |||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 605 TGCTTGAATTAGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTGGAGTTACAACGAATGA 664 Query 718 ACATGTTGATGGAGATGCAGTTAGAGATTGAGAAATCAAAGCACCGGAAACGCG 771 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 665 ACATGTTGATGGAGATGCAATTAGAGATTGAGAAATCAAAGCACCGGAAACGCG 718 Score = 307 bits (166), Expect = 1e-82 Identities = 230/258 (89%), Gaps = 15/258 (6%) Strand=Plus/Plus Query 879 CAGGTAAGCAATTGTAGAATTAGATTGGTGGAGGAAATACCATGGTGAAGCAAAGAGGAG 938 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 728 CAGGTAAGCAATTGTAGAATTAGATTGGTGGAGGAACTACCATGGTGACGCAAAGAGGAA 787 Query 939 TTACTTGAATCTGAAGCTCATTGAA-ATTGGAGGATCCTGTTACTTGTTTTAATCTGTAG 997 |||||||||||||||||||||| || |||||||| ||||||| | |||||||||| Sbjct 788 TTACTTGAATCTGAAGCTCATT-AACATTGGAGGGTCCTGTT-C------TAATCTGTAG 839 Query 998 GATGGAAGTTAGAGAACTCTTTAGGATGTCTTTGTTTGTTTTCTTCTACTTTCTAGCGTG 1057 ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 840 GATAAAAGTTAGACAACTCTTTAGGATGCCTTTGTTTGTTTTCTTCTACTTTCTAGCGTT 899 Query 1058 TTAG--TGTACATTG--GT-GTACTGGAGCAAATCTTCCTTAACTCTTTAGTAGCTGACA 1112 |||| ||||||||| || ||| |||||||||||||||||||||||| |||| |||||| Sbjct 900 TTAGGGTGTACATTGTTGTTGTAATGGAGCAAATCTTCCTTAACTCTT-AGTATCTGACA 958 Query 1113 AGTATGATCTACATTTGT 1130 |||||||| ||| ||||| Sbjct 959 AGTATGATGTACTTTTGT 976 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45061287894 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5