BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05580.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487353 jgi|Araly1|487353|fgenesh2_kg.6__487__AT5G05580.1 2553 0.0
Ahg478456 jgi|Araly1|478456|fgenesh2_kg.3__1157__AT3G11170.1 1214 0.0
> Ahg487353 jgi|Araly1|487353|fgenesh2_kg.6__487__AT5G05580.1
Length=1634
Score = 2553 bits (1382), Expect = 0.0
Identities = 1571/1658 (95%), Gaps = 29/1658 (2%)
Strand=Plus/Plus
Query 1 GAAAGAGGACCTCATATAGAAATAGCCTTCGAGCTAGAAAAGCACATAGAAGACTGATTA 60
|||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1 GAAAGACGACCTCATAAAGAAATAGCCTTCGAGCTAGAAAATCACAGAGAAGACTGATTA 60
Query 61 CGAGAGATAGACGACGACGACAAGGATCAACCAACACAGAATCCATCTCTCTATCTCTCT 120
||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 AGAGAGAT--AC-ACGACGACAAGGATCGACCAACACAGAATCCATCTCTCTTTCTCTCT 117
Query 121 --ACGTTATCTCTTCATTCAGAGAGTGCAAATAGAACGACAGAGACTTTTTCCTCTTTTC 178
|| || |||||||| ||||||||||||||| | ||||||||||| ||
Sbjct 118 CCACATTCTCTCTTCACTCAGAGAGTGCAAAT------------A-TTTTTCCTCTTCTC 164
Query 179 TTCTTGGGAAGAGGCTCCAATGGCGAGCTCGGTTTTATCAGAATGTGGTTTTAGACCTCT 238
|||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 165 TTCTTGGGTAGA-GCTCCAATGGCGAGCTCGATTTTATCAGAATGTGGTATTAGACCTCT 223
Query 239 CCCCAGATTCTACCCTAAACACACAACCTCTTTTGCCTCTAACCCTAAACCCACTTTCAA 298
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 224 CCCCAGATTCTACCCTAACCCCACAACCTCTTTTGCCTCTAACCCTAAACCTACTTTCAA 283
Query 299 ATTCAATCCACCAC-TTAAACCTCCTTCTTC-TCTTCTCAATTCCCGATATGGATTCTAC 356
|||||||||||| | | |||||||||||||| || ||||||||||| |||||| |||| |
Sbjct 284 ATTCAATCCACC-CGTCAAACCTCCTTCTTCTTC-TCTCAATTCCCTATATGGGTTCTGC 341
Query 357 TCTAAAACCAGGAACTGGGCATTGAATGTGGCAACACCTTTAACAACTCTTCAGTCTCCA 416
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 342 TCTAAAACCAGGAACTGGGCATTGAATGTGGCAACGCCTTTAACAACTCTTCAGTCTCCA 401
Query 417 TCCGAGGAAGACACGGAGAGATTCGACCCAGGTGCGCCTCCTCCCTTCAATTTGGCGGAT 476
||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 402 TCCGAAGAAGACACTGACAGATTCGACCCAGGTGCACCTCCTCCCTTCAATTTGGCAGAT 461
Query 477 ATAAGAGCAGCCATACCTAAGCATTGTTGGGTTAAGAATCCATGGATGTCTATGAGTTAT 536
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 462 ATAAGAGCAGCCATACCTAAGCATTGTTGGATTAAGAATCCATGGATGTCAATGAGTTAT 521
Query 537 GTTGTCAGAGATGTTGCTATCGTCTTTGGATTGGCTGCTGTT-GCTGCTTACTTCAACAA 595
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 522 GTTGTCAGAGATGTTGCTGTCGTCTTTGGATTGGCTGCT-TTAGCTGCTTACTTCAACAA 580
Query 596 TTGGCTTCTCTGGCCTCTCTACTGGTTCGCTCAAGGAACCATGTTCTGGGCTCTCTTTGT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TTGGCTTCTCTGGCCTCTCTACTGGTTCGCTCAAGGAACCATGTTCTGGGCTCTCTTTGT 640
Query 656 CCTTGGCCATGACTGCGGACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGC 715
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 641 CCTTGGCCATGACTGCGGACACGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGC 700
Query 716 TGGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTGGAGGATTAGCCACAG 775
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 701 TGGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTGGAGAATTAGCCACAG 760
Query 776 AACTCACCACCAGAACCATGGTCATGTCGAGAATGACGAATCATGGCATCCTTTGCCTGA 835
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 761 AACTCACCACCAGAACCATGGGCATGCCGAGAATGACGAATCATGGCATCCTTTGCCTGA 820
Query 836 AAGCATCTACAAGAATTTGGAAAAGACGACTCAAATGTTTAGGTTTACACTGCCTTTTCC 895
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 821 AAGCATCTACAAGAATTTGGAAAAAACGACTCAAATGTTTAGGTTTACACTGCCTTTTCC 880
Query 896 AATGCTCGCATACCCTTTCTACTTGTGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTA 955
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 881 AATGCTCGCATATCCTTTCTATTTGTGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTA 940
Query 956 TCATCCGGACAGTGACTTGTTTCTTCCAAAAGAGAAGAAAGATGTTCTGACATCAACTGC 1015
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 941 TCATCCGGACAGTGACTTGTTTCTTCCAAAAGAGAAGAAAGATGTTGTGACATCAACTGC 1000
Query 1016 CTGTTGGACTGCAATGGCTGCTTTGCTTGTTTGTCTCAACTTTGTCATGGGTCCAATCCA 1075
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1001 CTGTTGGACTGCAATGGCTGCTTTGCTTGTTTGTCTCAACTTTGTCATCGGTCCAATCCA 1060
Query 1076 GATGCTCAAACTATATGGCATCCCTTATTGGATATTTGTAATGTGGTTGGACTTCGTCAC 1135
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1061 AATGCTCAAACTATATGGCATCCCTTACTGGATATTTGTAATGTGGTTGGACTTCGTCAC 1120
Query 1136 TTACTTGCACCACCATGGACATGAAGACAAGCTCCCTTGGTATCGTGGAAAGGAATGGAG 1195
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1121 TTACTTGCATCACCATGGACATGAAGACAAGCTTCCTTGGTACCGTGGAAAGGAATGGAG 1180
Query 1196 TTACCTGAGAGGAGGGCTCACAACATTAGATCGTGACTACGGATGGATCAATAACATCCA 1255
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1181 TTACCTGAGAGGAGGGCTCACAACATTGGATCGTGATTACGGATGGATCAATAACATCCA 1240
Query 1256 CCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCT 1300
Query 1316 AGTAGAAGCAACAGAAGCAGCTAAACCAGTACTAGGAAAGTACTACAGAGAACCGAAAAA 1375
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1301 AGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGAAAGTACTACAGAGAACCGAAAAA 1360
Query 1376 CTCTGGACCTCTGCCACTTCACTTACTGGGAAGCCTCATAAAGAGTATGAAACAAGACCA 1435
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1361 CTCTGGACCTCTGCCACTTCACTTACTGGGAAGCCTCATAAAAAGTATGAAACAAGACCA 1420
Query 1436 TTTCGTAAGCGATACAGGAGATGTCGTGTACTATGAGGCAGATCCAAAACTCAATGGACA 1495
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TTTCGTAAGCAATACAGGAGATGTCGTGTACTATGAGGCAGATCCAAAACTCAATGGACA 1480
Query 1496 AAGAACATGAGGACATACTGCAGTGAACCAGGCAGACAAGTTACATAAATTCATCTTGGC 1555
|||||||||| |||| |||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 1481 AAGAACATGACGACAGACTGCAATGAACCAGG-AGACAAGTTA--TAAATTCATCTTGGC 1537
Query 1556 CCATTCATTATGTTCTTTTTGTTTTGGTGTAAAGCCTTTTCGAGATTAAAAAAGCATTAA 1615
||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
Sbjct 1538 CCATTCATTATGTTCTTTTTGTTTTGGTGTAAAGCCTTTGCGAGATTGAAAA-GCATTCA 1596
Query 1616 TTTGTAGAAACCTGTGGTAAAACTCTCGATCAAATGAA 1653
||||||||||| |||||||||||||||||| ||||||
Sbjct 1597 TTTGTAGAAACAAGTGGTAAAACTCTCGATCTAATGAA 1634
> Ahg478456 jgi|Araly1|478456|fgenesh2_kg.3__1157__AT3G11170.1
Length=1631
Score = 1214 bits (657), Expect = 0.0
Identities = 939/1073 (88%), Gaps = 28/1073 (3%)
Strand=Plus/Plus
Query 435 AGATTCGACCCAGGTGCGCCTCCTCCCTTCAATTTGGCGGATATAAGAGCAGCCATACCT 494
|||||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 361 AGATTCGATCCAGGTGCGCCTCCTCCGTTCAATTTAGCGGATATTAGAGCAGCTATACCT 420
Query 495 AAGCATTGTTGGGTTAAGAATCCATGGATGTC-TATGAGTTATGTTGTCAGAGATGTTGC 553
|||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||| ||
Sbjct 421 AAGCATTGTTGGGTTAAGAATCCATGGAAGTCGT-TGAGTTATGTCGTCAGAGATGTCGC 479
Query 554 TATCGTCTTTGGATTGGCTGCTGTTGCTGCTTACTTCAACAATTGGCTTCTCTGGCCTCT 613
||||||||||| |||||||||| ||||||||| ||||||||||| || | ||||||||
Sbjct 480 TATCGTCTTTGCTTTGGCTGCTGGAGCTGCTTACCTCAACAATTGGATTGTTTGGCCTCT 539
Query 614 CTACTGGTTCGCTCAAGGAACCATGTTCTGGGCTCTCTTTGTCCTTGGCCATGACTGCGG 673
||| ||| ||||||||||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 540 CTATTGGCTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTGTGG 599
Query 674 ACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGCTGGTCATCTTCTTCATTC 733
||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 600 ACATGGTAGTTTCTCAAATGATCCGAGGTTGAACAGTGTGGTTGGTCATCTTCTTCATTC 659
Query 734 CTCAATTCTGGTCCCTTACCATGGCTGGAGGATTAGCCACAGAACTCACCACCAGAACCA 793
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 CTCAATTCTGGTCCCATACCATGGCTGGAGAATTAGCCACAGAACTCACCACCAGAACCA 719
Query 794 TGGTCATGTCGAGAATGACGAATCATGGCATCCTTTGCCTGA-AAGCATCTACAAGAATT 852
||| ||||||||||| || ||||| ||||||||| || |||| || |||||||||| ||
Sbjct 720 TGGACATGTCGAGAACGATGAATCTTGGCATCCTATGTCTGAGAA-AATCTACAAGACTT 778
Query 853 TGGA-AAAGACGACTCA-AATGTTTAGGTTTACACTGCCTTTTC-CAATGCTCGCATACC 909
|||| ||| ||||| | | | ||||| ||||||||||| | || |||||||||||||
Sbjct 779 TGGACAAA-CCGACT-AGATTCTTTAGATTTACACTGCC-TCTCGTGATGCTCGCATACC 835
Query 910 CTTTCTACTTGT-GGAACAGAAGTCCAGGGAAACAA-GGTTCTCATTATCATCCGGACAG 967
|||||||||||| || | ||||||| |||||| || ||||||||||| |||||||||||
Sbjct 836 CTTTCTACTTGTGGGCTC-GAAGTCCGGGGAAA-AAGGGTTCTCATTACCATCCGGACAG 893
Query 968 TGACTTGTTTCTTCCAAAAGAGAAGAAAGATGTTCTGACATCAACTGCCTGTTGGACTGC 1027
|||||||| || || |||||||| |||||||| || || || ||||| |||||||||||
Sbjct 894 CGACTTGTTCCTCCCTAAAGAGAAAAAAGATGTCCTTACTTCTACTGCTTGTTGGACTGC 953
Query 1028 AATGGCTGCTTTGCTTGTTTGTCTCAACTTTGTC-ATGGGTCCAATCCAGATGCTCAAAC 1086
|||||||||| ||||||| ||||||||||| | | || |||||||| || ||||||||||
Sbjct 954 AATGGCTGCTCTGCTTGTCTGTCTCAACTTCG-CAATCGGTCCAATTCAAATGCTCAAAC 1012
Query 1087 TATATGGCATCCCTTATTGGATATTTGTAATGTGGTTGGACTTCGTCACTTACTTGCACC 1146
| ||||| || |||||||||||| |||||||||||||||||| || |||||| |||| |
Sbjct 1013 TTTATGGAATTCCTTATTGGATAAATGTAATGTGGTTGGACTTTGTGACTTACCTGCATC 1072
Query 1147 ACCATGGACATGAAGACAAGCTCCCTTGGTATCGTGGAAAGGAATGGAGTTACCTGAGAG 1206
||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1073 ACCATGGCCATGAAGATAAGCTTCCTTGGTACCGTGGAAAGGAATGGAGTTACCTGAGAG 1132
Query 1207 GAGGGCTCACAACATTAGATCGTGACTACGGATGGATCAATAACATCCACCACGATATTG 1266
|||| || |||||||| || ||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1133 GAGGACTTACAACATTGGACCGTGACTACGGATTGATCAATAACATCCATCACGACATTG 1192
Query 1267 GAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAA 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAA 1252
Query 1327 CAGAAGCAGCTAAACCAGTACTAGGAAAGTACTACAGAGAACC-GAAAAACTCTGGACC- 1384
|||||||||||||||||||| |||| ||||| ||||| || || || || ||||||||
Sbjct 1253 CAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG-TCTGGACCA 1311
Query 1385 TCTGCCACTT-CACTTACTGGGAAGCCT--CATAAAGAGTATGAAACAAGACCATTTCGT 1441
| ||||| || || ||||||| || || || ||| ||||| ||| |||| |||| |||
Sbjct 1312 T-TGCCA-TTACATTTACTGGAAATTCTAGCA-AAA-AGTATTAAAGAAGATCATTACGT 1367
Query 1442 AAGCGAT-ACAGGAGATGTCGTGTACTATGAGGCAGATCCAAAACTCAATGGA 1493
||||| | ||||||||| || |||||| | ||||||||||| ||| |||||
Sbjct 1368 GAGCGACGA-AGGAGATGTTGTATACTATAAAGCAGATCCAAATCTCTATGGA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5