BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05590.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487359 jgi|Araly1|487359|fgenesh2_kg.6__493__AT1G07780.3 1399 0.0
> Ahg487359 jgi|Araly1|487359|fgenesh2_kg.6__493__AT1G07780.3
Length=1139
Score = 1399 bits (757), Expect = 0.0
Identities = 945/1033 (91%), Gaps = 24/1033 (2%)
Strand=Plus/Plus
Query 6 TTTTTATTTTTCCGCCATTCTTGTCGATCTTCTTCAGTCGTAAAACCGCCGCGTCTCTGC 65
||||| ||||||||||||||||||||||||||||||| |||| ||||| | |||||||||
Sbjct 62 TTTTTGTTTTTCCGCCATTCTTGTCGATCTTCTTCAGCCGTACAACCG-C-CGTCTCTGC 119
Query 66 TGACCCTTCTCTTCTCATTTCATCGACGGGAGAAAATCCGATACCATCTGAGATTTCCAA 125
||| || | || | || | |||||||||| ||||| |||||| || ||||
Sbjct 120 TGA----TC-C-TC-C---TC-T----GGGAGAAAATTCGATATCATCTGCGA-TTCCGG 163
Query 126 CAGTGAAATTAAGATGTCAACAGGAATATCCACTGATCTACACGTC-CATTTTGGAGCTC 184
||||| ||||||||||||||||||||||||||| ||||| | || | |||| | |||||
Sbjct 164 CAGTGGAATTAAGATGTCAACAGGAATATCCACAGATCTCCTCG-CTCATTCTAGAGCTT 222
Query 185 TGAATTTCTCAAAAACCTACAAATCTGGTTTAAGCAATCGAACGGTGTCTTTTTCGAGAG 244
|||||||||| | |||||||||||||||||||||| |||||| ||||||| | |||||||
Sbjct 223 TGAATTTCTCCAGAACCTACAAATCTGGTTTAAGCTATCGAAAGGTGTCTGTCTCGAGAG 282
Query 245 TCGGGTATGCTCAGAACAGGAAATTGAGCTGCAGTGTTTCCAACACAGAGAATGTAGCTC 304
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 283 TCGGGTATGCTCAGAACAGGAAATTCAGCTGCAGTGTTTCCAGCACAGAGAATGTAGCTC 342
Query 305 CTAAGGATGATGAAAGAGGAAAGGATAGACCTTTGGTTAAGATGTGTGGCATCACATCAG 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTAAGGATGATGAAAGAGCAAAGGATAGACCTTTGGTTAAGATGTGTGGCATCACATCAG 402
Query 365 CCAGAGATGCAGCTATGGCAGTTGAGGCTGGTGCCGATTTTATTGGGATGATTATTTGGC 424
|||||||||| ||||||||||||||||||||||| ||||| || ||||||||| | ||||
Sbjct 403 CCAGAGATGCTGCTATGGCAGTTGAGGCTGGTGCTGATTTCATCGGGATGATTGTATGGC 462
Query 425 C-ACATTCAAAACGATCCATTTCTCTTTCTGTCGCAAAGGATATCTCCAAAGTGGCCAGG 483
| | |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 463 CGA-ATTCAAAACGATCCATTTCTCTTTCTGTTGCAAAGGATATCTCCAAAGTGGCGAGG 521
Query 484 GAAGGTGGGGCCAAACCTGTTGGTGTTTTTGTTGAAGATGATGACAACACGATACTGAGA 543
|| ||||||| |||| ||||||||||||||||||| |||||||| ||||||||| || ||
Sbjct 522 GATGGTGGGGTCAAATCTGTTGGTGTTTTTGTTGATGATGATGAGAACACGATATTGCGA 581
Query 544 GCAGCTGATTCCTCTGACCTTGAGCTTGTGCAGCTTCATGGTAATGGTTCGCGTGCTGCT 603
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 GCAGCTGATGCCTCAGACCTTGAGCTTGTGCAGCTTCATGGTAATGGTTCGCGTGCTGCT 641
Query 604 TTCTCGAGGTTAGTACGC-AAGAGGAGAGTCATATATGTCCTTAATGCAAATCAGGATGG 662
|||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 642 TTCTCGAGGTTAGTACGCGAA-AGGAGAGTCATATATGTCCTTAATGCAAATGAGGATGG 700
Query 663 AAAGCTCTTGAATGAAGTTCCTGAAGAGGATTGTCATCTTGCTGATTGGATTCTTGTGGA 722
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 701 AAAGCTCCTGAATGAAGTTCCTGAAGAGGATTGTCATCTCGCTGATTGGATTCTTGTGGA 760
Query 723 TAGTGCAACGGGTGGGAGTGGACACGGATTTAACTGGGCTCAATTCAAGTTGCCTTCCGT 782
|||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
Sbjct 761 TAGTGCAACGGGTGGGAGTGGAAAAGGATTTAACTGGGCTCAATTCAAGTTACCTTCCAT 820
Query 783 CAGAAGCAGAAATGGGTGGCTCTTAGCTGGGGGAATCAATCCAACAAATGTTTCAGAAGC 842
|||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct 821 CAGAAGCAGAAATGGGTGGCTCTTAGCTGGCGGAATCAATCCGACAAACGTGTCAGAAGC 880
Query 843 TCTTTCTATCCTTCAACCTGATGGAATTGATGTTAGTAGCGGTATTTGCGGTACAGACGG 902
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 881 TCTTTCTATCCTTCAACCTGATGGAATTGATGTTAGCAGCGGTATCTGCGGTACAGACGG 940
Query 903 TATCCAGAAGGATAAGTCTAAGATAAGCTCCTTTATAACTGCAGTTCGCTCTGTACACTA 962
||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 941 CATCCAGAAGGATAAGGCTAAGATAAGTTCCTTCATAACTGCAGTTCGCTCTGTACACTA 1000
Query 963 CTAATGGCAAGCAATATAAACCAAGGTAATTTATCTTGTAACTATAGTTTTGAGCATCAA 1022
|||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1001 CTAATGGCTAGCAATATAAGGCAAGGTAATTTTTCTTGTAACTATAGTTTCGAGCATCAA 1060
Query 1023 CCTGTTGTTTCCA 1035
|||||||| ||||
Sbjct 1061 CCTGTTGTGTCCA 1073
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1153 GGCTCTCAAGAACAAGATCCTTGTATGAAA 1182
||||||||||||||||||||||||||||||
Sbjct 1110 GGCTCTCAAGAACAAGATCCTTGTATGAAA 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5