BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05600.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487361 jgi|Araly1|487361|fgenesh2_kg.6__495__AT5G05600.1 2266 0.0
Ahg928831 jgi|Araly1|928831|scaffold_301288.1 809 0.0
Ahg938544 jgi|Araly1|938544|scaffold_502735.1 244 1e-63
> Ahg487361 jgi|Araly1|487361|fgenesh2_kg.6__495__AT5G05600.1
Length=1381
Score = 2266 bits (1227), Expect = 0.0
Identities = 1334/1384 (96%), Gaps = 14/1384 (1%)
Strand=Plus/Plus
Query 1 AGCCGATTTCTAGATTCTCCTCCACCACCATTTTACCCTTCTTTTAAATTCCTTCCTTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AGCCGATTTCTAGATTCTCCTCCACCACCATTTTACCCTTCTTTTAAATTCCTTCCTCCA 60
Query 61 ATCAAAATTAGAATTATTTCT--CAAACCTCTTCTTTATATACTAAAACGTCTCACATGA 118
|||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 61 ATCAAAATTATAATTGTTTCTCACAAACCTCTTCTTTATAT-CTAAAACGTCTCACATGA 119
Query 119 ACAAGAAGAATAAA-TAGAAACAAAGAAGATGAACAAG---AACAAGATTGATGTTAAGA 174
||| ||||||||| | ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 120 GCAAAAAGAATAAACT-GAAACAAAGAAGATGAACAAGAACAACAAGATGGATGTTAAGA 178
Query 175 TCGAGACGAAGAAAGGATCGATGGATGAGTGGCCTGAGCCAATCGTCCGAGTCCAGTCCT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCGAGACGAAGAAAGGATCGATGGATGAGTGGCCTGAGCCAATCGTCCGAGTCCAGTCCT 238
Query 235 TAGCCGAGAGCAACCTCTCCTCTCTCCCCGACCGTTACATCAAACCAGCGTCTCTACGCC 294
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 239 TAGCCGAGAGCAACCTCTCCTCTCTCCCCGACCGCTACATCAAACCAGCATCTCTACGCC 298
Query 295 CCACCACGACCGAAGACGCTCCTACCGCGACCAACATCCCAATCATAGACCTTGAAGGAC 354
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 299 CCACCACGACCGAAGACGCTCCTGCCGCGACCAACATCCCAATCATAGACCTTGAAGGGC 358
Query 355 TCTTCTCGGAAGAAGGGTTGTCTGATGACGTCATCATGGCTCGGATATCGGAGGCTTGCC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCTTCTCGGAAGAAGGGTTGTCTGATGACGTCATCATGGCTCGGATATCGGAGGCTTGCC 418
Query 415 GTGGGTGGGGGTTCTTCCAGGTGGTGAACCACGGGGTCAAACCGGAGCTGATGGACGCGG 474
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 GTGGGTGGGGGTTCTTCCAGGTGGTGAACCACGGGGTCAAACCGGAGTTGATGGACGCGG 478
Query 475 CTAGGGAGAATTGGAGAGAGTTTTTCCATATGCCGGTTAATGCCAAAGAGACTTACTCAA 534
|||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |
Sbjct 479 CTAGAGAGAATTGGAGAGAGTTTTTCCATTTGCCGGTGAATGCAAAAGAGACTTACTCGA 538
Query 535 ACTCACCAAGAACCTACGAAGGCTATGGAAGTAGACTAGGTGTTGAGAAAGGAGCAAGTC 594
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 539 ACTCACCAAGAACCTACGAAGGCTATGGAAGCAGGTTAGGTGTTGAGAAAGGAGCAAGTC 598
Query 595 TTGATTGGAGTGATTATTACTTTCTCCATCTTCTTCCTCATCATTTGAAAGACTTCAACA 654
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 TTGATTGGAGTGATTATTACTTTCTTCATCTTCTTCCTCATCATTTGAAAGACTTCAACA 658
Query 655 AGTGGCCTTCTTTTCCTCCCACCATAAGAGAAGTGATCGATGAATACGGCGAAGAGCTAG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGTGGCCTTCTTTTCCTCCCACCATAAGAGAAGTGATCGATGAATACGGCGAAGAGCTAG 718
Query 715 TGAAGCTAAGTGGGAGAATTATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGATA 774
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGAAGCTGAGTGGGAGAATCATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGATA 778
Query 775 AGTTTCAAGAAGCATTTGGAGGTGAAAACATTGGGGCGTGTTTGAGGGTTAATTATTACC 834
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 779 AGTTTCAAGAAGCATTTGGAGGTGAAAACATAGGGGCCTGTTTAAGGGTTAATTATTACC 838
Query 835 CAAAATGCCCTCGACCGGAGCTGGCTCTTGGTCTCTCTCCACACTCCGATCCTGGCGGTA 894
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAAAATGCCCTCGACCGGAACTGGCTCTTGGTCTCTCTCCACACTCCGATCCTGGCGGTA 898
Query 895 TGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAAAGATGACACGT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAAAGATGACACGT 958
Query 955 GGATCACCGTCAAGCCTCATCCCCATGCTTTCATCGTCAATATTGGTGATCAAATACAGA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGATCACCGTCAAGCCTCATCCCCATGCTTTCATCGTCAATATTGGTGATCAAATACAGA 1018
Query 1015 TACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGATAGTGAACTCGGACAAGG 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 TACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGATAGTGAACTCGGACAAAG 1078
Query 1075 AGAGAGTTTCACTTGCCTTCTTCTACAATCCTAAAAGCGATATTCCGATCCAACCATTAC 1134
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1079 AGAGAGTTTCACTTGCCTTCTTCTACAACCCTAAAAGCGATATTCCGATCCAACCGTTAC 1138
Query 1135 AAGAACTTGTATCAACTCATAATCCTCCTTTATACCCTCCCATGACCTTTGATCAGTATA 1194
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 AAGAACTTGTATCAACTCATAATCCTCCTTTATATCCTCCCATGACCTTTGATCAGTATA 1198
Query 1195 GACTCTTTATCAGAACTCAAGGTCCACAAGGCAAATCCCATGTTGAATCTCATATTTCTC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GACTCTTTATCAGAACTCAAGGTCCACAAGGCAAATCCCATGTTGAATCTCATATTTCTC 1258
Query 1255 CTCGTTGATTGTTTTTCTTTTATTTCTTCCCTTAAAGAAAAATTAATGTTTTGTTATTTT 1314
|||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||
Sbjct 1259 CTCGTTGATTGTTTTTTTTTTCTT-CTTCCCGCAAAGAAAAATTAATGTTTTGTTATTTT 1317
Query 1315 --T-ATG-AT-ATTACGTCTGACTTGTATATGTGTACAATCATTTATATTTTGAATTTTC 1369
| || || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CATTATACATTATTACGCCTGACTTGTATATGTGTACAATCATTTATATTTTGAATTTTC 1377
Query 1370 AAAG 1373
||||
Sbjct 1378 AAAG 1381
> Ahg928831 jgi|Araly1|928831|scaffold_301288.1
Length=1160
Score = 809 bits (438), Expect = 0.0
Identities = 736/879 (84%), Gaps = 24/879 (3%)
Strand=Plus/Plus
Query 399 ATATCGGAGGCTTGCCGTGGGTGGGGGTTCTTCCAGGTGGTGAACCACGGGGTCAAACCG 458
||||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||
Sbjct 276 ATATCGGAGGCATGCCGTGAATGGGGATTCTTTCAGGTGATCAACCATGGGGTGAAACCG 335
Query 459 GAGCTGATGGACGCGGCTAGGGAGAA-TTGGAGAGAG-TT-TTTCCATATGCCGGTT-AA 514
|||||||||||||| ||||| || || ||||| | || || ||| || |||||||| ||
Sbjct 336 GAGCTGATGGACGCAGCTAGAGA-AACTTGGA-AAAGCTTCTTT-AATTTGCCGGTTGAA 392
Query 515 TGCCAAAG-AGACTTACTCAAACTCACCAAGAACCTACGAAGGCTATGGAAGTAGACTAG 573
||||||| || |||||||||||| ||||||||||| ||||| |||||||| ||| | |
Sbjct 393 -GCCAAAGAAG-TTTACTCAAACTCCCCAAGAACCTATGAAGGATATGGAAGCAGATTGG 450
Query 574 GTGTTGAGAAAGGAGCAAGTCTTGATTGGAGTGATTATTACTTTCTCCATCTTCTTCCTC 633
|||| || |||||||| | ||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 451 GTGTGGAAAAAGGAGCCATTCTTGATTGGAATGATTATTACTATCTCCATTTTCTTCCTC 510
Query 634 -ATCATTTGAAAGACTTCAACAAGTGGCCTTCTTTTCCTCCCACCATAAGAGAAGTGATC 692
|| ||||| || |||||||| ||||||||||| ||| ||| ||| |||||||||||
Sbjct 511 TTTC-CTTGAAGGATTTCAACAAATGGCCTTCTTTACCTTCCAACATTAGAGAAGTGATT 569
Query 693 GATGAATACGGCGAAGAGCTAGTGAAGCTAAGTGGGAGAATTATGAGGGTATTATCGACA 752
||||| |||||| |||| |||||||||||| |||||||| | |||| | | |||||| ||
Sbjct 570 GATGAGTACGGCAAAGAACTAGTGAAGCTAGGTGGGAGACTAATGACGATCTTATCGTCA 629
Query 753 AACTTGGGACTAAAAG-AGGATAAGTTTCAAGAAGCATTTGGAGGTGAAAACATTGGGGC 811
|| ||||| |||| || || | || |||||||||||||||| || ||| ||||||| ||
Sbjct 630 AATTTGGGGCTAAGAGAAGAACAA-CTTCAAGAAGCATTTGGTGGAGAAGACATTGGTGC 688
Query 812 GTGTTTGAGGGTTAATTATTACCCAAAATGCCCTCGACCGGAGCTGGCTCTTGGTCTCTC 871
||||||||||||||||||||||||||||||||| |||||| || || || || |||||
Sbjct 689 ATGTTTGAGGGTTAATTATTACCCAAAATGCCCTAAACCGGAACTTGCCCTCGGCCTCTC 748
Query 872 TCCACACTCCGATCCTGGCGGTATGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCT 931
|| || |||||||| ||||| |||||||| ||||| ||||| ||||||||| |||| ||
Sbjct 749 CCCTCATTCCGATCCCGGCGGCATGACCATCCTCTTGCCGGATGATCAAGTCGTCGGCCT 808
Query 932 CCAGGTTCGTAAAGATGACACGTGGATCACCGTCAAGCCTCATCC-CCATGCTTTCATCG 990
|| || ||| | ||||||||||||||||||||||| |||| ||| ||||||||| ||||
Sbjct 809 TCAAGTCCGTCACGATGACACGTGGATCACCGTCAATCCTC-TCCGCCATGCTTTTATCG 867
Query 991 TCAATATTGGTGATCAAATACAGATACTAAGCAACTC-AACATACAAGAGTGTGGAGCAT 1049
||||||| || |||||||| |||||||||||||| || || ||||||||| ||||| |||
Sbjct 868 TCAATATCGGCGATCAAATTCAGATACTAAGCAATTCGAA-ATACAAGAGCGTGGAACAT 926
Query 1050 AGAGTGATAGTGAACTCGGACAAGGAGAGAGTTTCACTTGCCTTCTTCTACAATCCTAAA 1109
||||||||||||| ||||| || || || |||||||| || |||||||| || |||||
Sbjct 927 CGAGTGATAGTGAATTCGGAAAAAGAAAGGGTTTCACTAGCATTCTTCTATAACCCTAAG 986
Query 1110 AGCGATATTCCGATCCAACCATTACAAGAACTTGTATCAACTCATA--AT-CCTCCTTTA 1166
|| || ||||||||||||||| | ||| |||||| ||| ||| || || ||||||| |
Sbjct 987 AGTGACATTCCGATCCAACCAATGCAACAACTTG--TCACCTC-TACGATGCCTCCTTCA 1043
Query 1167 TACCCTCCCATGACCTTTGATCAGTATAGACTCTTTATCAGAACTCAAGGTCCACAAGGC 1226
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 1044 TATCCTCCCATGACCTTTGATCAGTATAGACTCTTTATTAGAACGCAAGGTCCACGTGGA 1103
Query 1227 AAATCCCATGTTGAATCTCATATTTCTCCTCGTTGATTG 1265
|||||||| ||||| |||||| | || ||||||| ||||
Sbjct 1104 AAATCCCACGTTGAGTCTCATCTATCCCCTCGTTAATTG 1142
> Ahg938544 jgi|Araly1|938544|scaffold_502735.1
Length=1132
Score = 244 bits (132), Expect = 1e-63
Identities = 461/611 (75%), Gaps = 58/611 (9%)
Strand=Plus/Plus
Query 545 AACCTACGAAGGCTATGGAAGTAGACTAGGTGTTGAGAAA-GGAGCAAGTCTTGATTGGA 603
||| ||||| || |||||||| ||||||| || || ||| || || | |||||||||||
Sbjct 389 AACTTACGAGGGATATGGAAGCCGACTAGGCGTAGA-AAAGGGTGCTATTCTTGATTGGA 447
Query 604 GTGATTATTACTT-TCTCCATCT-TCTTCC-TCATCATTTGAAAGACTT-CAACAAGTGG 659
| || || || || ||| ||| | | || || || |||||| || || || |||||||
Sbjct 448 GCGACTACTA-TTATCTTCAT-TACCAACCTTCGTC-TTTGAAGGA-TTACACCAAGTGG 503
Query 660 CCTTCTTTTCCTCCCACCA-T-AAGAGAAGTGA-TCGATGAATACGGCGAA-GAGCTAGT 715
||||| || ||| | || | ||||| | | | || || || || || || | ||
Sbjct 504 CCTTCCTTGCCT--CTTCATTGCCGAGAAAT-ATTGGAGGATTATTGC-AAGGAAATGGT 559
Query 716 GAAGCTAAGTGGGAGAA-TT-ATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGAT 773
||| || | || ||||| || |||| | || |||||| |||||||||| || |||| ||
Sbjct 560 GAAACT-A-TGCGAGAAGTTAATGAAGATACTATCGAAAAACTTGGGATTACAAGAAGA- 616
Query 774 AAG-TTTCAAGAA-GCATTTGGAGGTGAAA-A--CAT-TGG-GGCGTGTTTGAGGGTTAA 826
|| ||||| || || ||||| ||| ||| | || || || ||||| ||||||||
Sbjct 617 CAGACTTCAA-AATGCGTTTGGTGGT-AAAGAGGAATCAGGAGG-TTGTTTAAGGGTTAA 673
Query 827 TTATTACCCAAAATGCCCTC-GACCGGAGCTGGCTCTTGGTC-TCTCTCCACACTCCGAT 884
|||||||||||||||||||| | ||||||||| ||||||| | ||||||| |||||||||
Sbjct 674 TTATTACCCAAAATGCCCTCAG-CCGGAGCTGACTCTTGG-CATCTCTCCGCACTCCGAT 731
Query 885 CCTGGCGGTATGA-CCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAA 943
|| || || || | |||||||||| |||||||| |||||| |||||| ||||| |||
Sbjct 732 CCCGGTGG-ATTAACCATTCTCTTGCCGGACGAACAAGTCGCCGGTCTTCAGGTCCGTG- 789
Query 944 AGAT--GAC-ACG-T-GGATCACCGTC-AAGCCT-CATCCCCATGCTTTCATCGTCAATA 996
||| ||| ||| | ||||||| ||| || || | ||| |||||||||||||| || |
Sbjct 790 -GATCCGACGACGCTTGGATCACAGTCGAA-CCAGC-TCCTCATGCTTTCATCGTTAACA 846
Query 997 TTGGTGATCAAATACAGATACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGA 1056
||||||| ||||| ||||| || ||||| |||| |||||| || || || || |||||||
Sbjct 847 TTGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACACAGAGTGA 906
Query 1057 TAGTGAACTCGGACAAG-GAGAGAGTT-TCACTTGCC-TTCTTCTACAATCCTAAAAG-C 1112
| |||| | | | ||| ||||| | | || ||| | ||||||||||| || ||| | |
Sbjct 907 TCGTGAGCCCTG-CAAATGAGAG-GCTATCT-TTGGCATTCTTCTACAACCC-AAAGGGC 962
Query 1113 GATATTCCGAT 1123
|| |||||||
Sbjct 963 AATGTTCCGAT 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5