BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05610.1
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487363 jgi|Araly1|487363|fgenesh2_kg.6__497__AT5G05610.2 1496 0.0
Ahg478459 jgi|Araly1|478459|fgenesh2_kg.3__1160__AT3G11200.1 739 0.0
> Ahg487363 jgi|Araly1|487363|fgenesh2_kg.6__497__AT5G05610.2
Length=1087
Score = 1496 bits (810), Expect = 0.0
Identities = 866/893 (97%), Gaps = 4/893 (0%)
Strand=Plus/Plus
Query 9 GtctctctctatctctctTGTCCGTGCGCATCGGATTTTGGAAACCATTGATGCAGACCT 68
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GTCTATCTCTACCTCTCTTGTCCGTGCGCATCGGATTTTGGAAACCATTGATGCAGACCT 62
Query 69 CAATCCATCTCTAACACCACTGATCTATCTACTTAGGTCTTCTCTAACAATACTTGTAA- 127
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 63 CAATCCATCTCTAACACCACTGATCTATCTACTTAGGTCTTCTCTAACGATACTCGTAAC 122
Query 128 TTTTCTTTCTTTTTGCTTCTTCCGTCACTACATCTATGGCCGCTGAGTCTTCTAACCCTC 187
|||| || | |||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 123 TTTT-TTAC--TTTGCTTCTTCCCTTACTACATCGATGGCCGCTGAGTCTTCTAACCCTC 179
Query 188 GCACCGTCGAAGAGATCTTCAAGGATTTTAGCGGTCGTCGCTCCGGTTTTCTTCGAGCTC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCACCGTCGAAGAGATCTTCAAGGATTTTAGCGGTCGTCGCTCCGGTTTTCTTCGAGCTC 239
Query 248 TCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGGAGAATCTGTGTT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGGAGAATCTGTGTT 299
Query 308 TGTACGGACACCCGAATGGGACATGGGAAGTGAATCTTCCAGCTGAGGAAGTGCCTCCGG 367
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 300 TGTACGGACACCCAAATGGGACATGGGAAGTGAATCTTCCGGCGGAGGAAGTGCCTCCGG 359
Query 368 AGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCTAGAGATGGTATGCAGCGTAAAGATT 427
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 AGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCAAGAGATGGTATGCAGCGTAAAGATT 419
Query 428 GGCTCTCTTTAGTTGCTGTCCACAGTGATTGTTGGTTACTCTCTGTTTCTTCTTACTTCG 487
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 GGCTCTCTTTAGTTGCTGTCCACAGTGACTGTTGGTTACTCTCTGTTTCTTCTTACTTCG 479
Query 488 GCGCTCGTCTTAATCGCAATGAGAGGAAACGTCTATTTAGTCTGATCAACGATCTCCCAA 547
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 GCGCTCGCCTTAATCGCAATGAGAGGAAACGCCTATTTAGTCTGATCAACGATCTCCCAA 539
Query 548 CTCTCTTTGAAGTAGTGACGGGTAGGAAACCCATCAAAGACGGTAAACCAAGCATGGATC 607
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 540 CTCTCTTTGAAGTAGTGACGGGTAGGAAGCCCATCAAAGATAATAAACCAAGCATGGATC 599
Query 608 TCGGAAGCAAATCCAGAAACGGCGTAAAGAGATCAATTGAAGGGCAGACAAAGAGCACGC 667
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 TCGGAAGCAAATCCAGAAACGGCGTTAAGAGATCAATTGAAGGGCAGACAAAGAGCACGC 659
Query 668 CGAAACTAATGGAAGAGAGCTATGAAGATGAAGACGATGAGCATGGAGACACACTCTGTG 727
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 CGAAACTAATGGAAGAGAGCTACGAAGATGAAGACGATGAGCATGGAGACACACTCTGTG 719
Query 728 GAAGTTGTGGAGGAAACTACACAAACGACGAGTTCTGGATATGTTGTGATGTGTGTGAAC 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGTTGTGGAGGAAACTACACAAACGACGAGTTCTGGATATGTTGTGATGTGTGTGAAC 779
Query 788 GTTGGTACCATGGGAAGTGTGTGAAGATAACACCAGCCAAAGCAGAGAGCATCAAGCAAT 847
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 GTTGGTACCATGGGAAGTGTGTGAAGATAACACCAACCAAAGCAGAGAGCATCAAGCAAT 839
Query 848 ACAAATGCCCTTCTTGCTGCACTAAGAAAGGAAGACAGTGAGTGAATGAATGA 900
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 ACAAATGCCCTTCTTGCTGCACTAAGAAAGGAAGACAGTGAGTGAATGAGTGA 892
Score = 158 bits (85), Expect = 1e-37
Identities = 113/125 (90%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 1031 GTA-TGAGACATGGAGAGAGTCAT--AGAGA-CACCAGCTGCTTAGAGAGCTTCGTCAAC 1086
||| |||||||||||||||||||| ||| | ||||||||| ||||||| ||||||||||
Sbjct 921 GTAGTGAGACATGGAGAGAGTCATAAAGACACCACCAGCTGGTTAGAGAACTTCGTCAAC 980
Query 1087 TTTTGATCAAATATGCCATGTGTTTGTATATGTAGCGACTCTACTACTTTCATC-GTTTA 1145
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 981 TTTTGATCAAATATGCCATGTGTTTGTATATGTAGCGACTCTACT--TT-CATTAGTTTA 1037
Query 1146 TGTGT 1150
|||||
Sbjct 1038 TGTGT 1042
Score = 80.5 bits (43), Expect = 3e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1183 TATTCTTATGTAAGGTTGATCTTCATAATCTCTCATATGGTATTTT 1228
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1042 TATTCTTATGTAAGGTTGATCTTCATAATCTCTCATATGGTGTTTT 1087
> Ahg478459 jgi|Araly1|478459|fgenesh2_kg.3__1160__AT3G11200.1
Length=1197
Score = 739 bits (400), Expect = 0.0
Identities = 633/742 (85%), Gaps = 29/742 (4%)
Strand=Plus/Plus
Query 178 TCTAACCCTCGCACCGTCGAAGAGATCTTCAAGGATTTTAGCGGTCGTCGCT-CCGGTTT 236
||||||||||||| ||| |||||||||||||| |||| ||||| |||||| | ||| | |
Sbjct 186 TCTAACCCTCGCAACGTTGAAGAGATCTTCAAAGATTATAGCGCTCGTCG-TGCCGCTCT 244
Query 237 TCTTCGAGCTCTCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGGA 296
|||||| |||||| | ||||||||| | || |||||| |||||||||||||| |||
Sbjct 245 TCTTCGTGCTCTCACTAAAGATGTTGATGATTTTTACTCTCAATGCGATCCGGAAAAGGA 304
Query 297 GAATCTGTGTTTGTACGGACACCCGAATGGGACATGGGAAGTGAATCTTCCAGCTGAGGA 356
|||| ||||||||||||||||||| |||| | |||||||||||||||| ||||| |||||
Sbjct 305 GAATTTGTGTTTGTACGGACACCCTAATGAGTCATGGGAAGTGAATCTACCAGCAGAGGA 364
Query 357 AGTGCCTCCGGAGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCTAGAGATGGTATGCA 416
||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 365 AGTTCCTCCTGAGCTACCTGAGCCTGCTCTTGGTATCAATTTCGCTAGAGATGGTATGCA 424
Query 417 GCGTAAAGATTGGCTCTCT-TTAGTTGCTGTCCACAGTGATTGTTGGTTACTCTCTGTTT 475
| | ||||||||||| ||| || |||||||| ||||||||||||||||| ||||||||||
Sbjct 425 GAGGAAAGATTGGCTTTCTCTT-GTTGCTGTTCACAGTGATTGTTGGTTGCTCTCTGTTT 483
Query 476 C-TTCTTACTTCGGCGCTCGTCTTAATCGCAATGAGAGGAAAC-GTCTATTTAGTCTGAT 533
| ||| ||||| || |||||||||||||||||||||||||| | || |||| ||||||||
Sbjct 484 CTTTC-TACTTTGGAGCTCGTCTTAATCGCAATGAGAGGAAGCGGT-TATTCAGTCTGAT 541
Query 534 CAACGATCTCCCAACTCTCTTTGAAGTAGTGACGGGTAGGAAACCCATCAAAGACGGTAA 593
||||||||||||||||||||| || |||||||| ||||||||| |||| |||||| ||
Sbjct 542 CAACGATCTCCCAACTCTCTTCGATGTAGTGACTGGTAGGAAAGCCATGAAAGACAACAA 601
Query 594 ACCAAGCAT-GGATCTC-GGAAGCAAATCCAGAAACGGCG-TAAAGAGATCAATTGAAGG 650
|||||| | |||| || ||||||||||||||||| ||| ||| ||||||||| || ||
Sbjct 602 GCCAAGC-TCGGAT-TCCGGAAGCAAATCCAGAAATGGCACTAA-GAGATCAATAGACGG 658
Query 651 GCAGACAAAGAGC--A-CGCCGAAACTAATGGAAGAGAGCTATGA--AG-ATGAAGACGA 704
||||||||||||| | | |||||||||||||||||||||||||| || | ||||| ||
Sbjct 659 GCAGACAAAGAGCTCAACACCGAAACTAATGGAAGAGAGCTATGAGGAGGAAGAAGAAGA 718
Query 705 TGA-G-C-A---TGGAGACACACTCTGTGGAAGTTGTGGAGGAAACTACACAAACGACGA 758
|| | | | ||||||||| |||||||| || |||||||| || |||||||| || ||
Sbjct 719 AGAAGACGAGCATGGAGACACTCTCTGTGGGAGCTGTGGAGGTAATTACACAAATGAGGA 778
Query 759 GTTCTGGATATGTTGTGATGTGTGTGAACGTTGGTACCATGGGAAGTGTGTGAAGATAAC 818
||||||||| || |||||||| |||||||| ||||||||||| || || || ||||||||
Sbjct 779 GTTCTGGATTTGCTGTGATGTTTGTGAACGCTGGTACCATGGAAAATGCGTTAAGATAAC 838
Query 819 ACCAGCCAAAGCAGAGAGCATCAAGCAATACAAATGCCCTTCTTGCTGCACTAAGAAAGG 878
|| || |||||||||||||||||||| || |||||||| ||||||| | ||||||||
Sbjct 839 TCCGGCTAAAGCAGAGAGCATCAAGCAGTATAAATGCCCGCCTTGCTGTGCAAAGAAAGG 898
Query 879 AAGACAGTGA-G-TGAATGAAT 898
|||||||||| | ||| |||||
Sbjct 899 AAGACAGTGATGGTGA-TGAAT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45861869151
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5