BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05630.1
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939991 jgi|Araly1|939991|scaffold_600535.1 2255 0.0
> Ahg939991 jgi|Araly1|939991|scaffold_600535.1
Length=1507
Score = 2255 bits (1221), Expect = 0.0
Identities = 1426/1523 (94%), Gaps = 22/1523 (1%)
Strand=Plus/Plus
Query 201 ATTTTAAGTTCCAATTCTCGATGACTGAGCTTAGCTC-TCCGAATCTTGACTCCGCCTCG 259
|||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||| |
Sbjct 1 ATTTTAAGTTTCAATTCTTGATGACTGAGCTTAGCTCTTCC-AATCTTGACTCCGCCACA 59
Query 260 CAGAAGCCAAGAATCTCCACCGAAAACcctcctcctcctcctcctcACATAAGCATTGGT 319
||||||| ||||||||||||||||||||| |||||| | | | |||| || | | ||
Sbjct 60 CAGAAGCTAAGAATCTCCACCGAAAACCCACCTCCT-CACAT--AAACAT-AG-A-T-GT 112
Query 320 -GTCACCACCGGTGACCCTGCTAC-GTCTCCGGCGAGAACCGTCAACCAAATCAAGAAAA 377
||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 113 CCCCACCACCGGTGACGCTGCT-CTGTCTCCGGCGAGAACCGTCAACCAATTCAAGAAAA 171
Query 378 TAACGGTACTGCCACTAGTTTTCCTGATATTCTACGAGGTCTCAGGCGGTCCGTTTGGGA 437
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTACTGTACTGCCACTAGTTTTCCTGATATTCTACGAGGTCTCAGGCGGTCCGTTTGGGA 231
Query 438 TTGAGGATAGTGTGAAAGCAGCAGGACCATTGTTAGCCATTGTTGGATTCATCGTCTTCC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TTGAGGATAGTGTGAAAGCAGCAGGACCATTGTTAGCCATTGTTGGATTCATCGTCTTCC 291
Query 498 CTTTTATATGGAGTATCCCTGAAGCACTCATCACTGCTGAGATGGGAACAATGTTCCCGG 557
| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 292 CGTTCATATGGAGTATCCCTGAAGCACTCATCACCGCTGAGATGGGAACAATGTTCCCTG 351
Query 558 AGAACGGTGGTTACGTCGTGTGGGTCACTTTAGC-TATGGGACCTTATTGGGGGTTTCAA 616
|||||||||||||||| ||||||||| ||| ||| | |||||||||||||||||||||||
Sbjct 352 AGAACGGTGGTTACGTTGTGTGGGTCTCTTCAGCCT-TGGGACCTTATTGGGGGTTTCAA 410
Query 617 CAAGGTTGGGTTAAATGGCTAAGTGGCGTTATAGACAACGCTCTTTATCCGATTCTCTTC 676
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 411 CAAGGTTGGGTTAAATGGCTAAGCGGCGTTATAGACAACGCTCTTTATCCGATTCTTTTC 470
Query 677 CTTGACTATCTCAAATCAGGAATCCCGATACTCGGTAGTGGGATCCCTCGAGTCGCTGCG 736
|| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 471 CTCGACTATCTCAAATCCGGAATCCCGATTCTCGGTAGTGGAATCCCTCGAGTCGCTGCA 530
Query 737 ATTCTGGTGTTGACTGTAGCCTTGACTTACTTGAACTACAGGGGTTTAAGCATTGTTGGT 796
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 531 ATTTTGGTGTTGACTGTAGCCTTGACTTACTTGAACTACAGGGGTTTAAGCATTGTCGGT 590
Query 797 GTAGCAGCTGTTCTTCTCGGCGTTTTCTCCATCCTTCCGTTTGTGGTGATGTCTTTCATG 856
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 591 GTAGCAGCTGTTCTTCTCGGCGTTTTCTCGATCCTTCCGTTTCTGGTGATGTCTTTCATG 650
Query 857 TCGATTCCAAAGCTTAAACCTTCGAGATGGCTTGTGGTTAGCAAGAAGATGAAAGGTGTT 916
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TCGATTCCAAAGCTTAAGCCTTCGAGATGGCTTGTGGTTAGCAAGAAGATGAAAGGTGTT 710
Query 917 AACTGGAGCTTGTATCTCAATACACTCTTCTGGAATCTCAACTATTGGGATTC-AGTTAG 975
||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct 711 GACTGGAGCTTGTATCTCAACACACTTTTCTGGAATCTCAACTATTGGGATTCGA-TTAG 769
Query 976 TACGCTTACGGGTGAAGTTGAAAACCCGAGTAAAACATTACCAAGAGCTCTGTTTTATGC 1035
||||||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 770 TACGCTTTCGGGCGAAGTGGAAAACCCGAGTAAAACGTTACCAAGGGCTCTGTTTTATGC 829
Query 1036 TCTGCTTCTTGTTGTGTTTTCTTACATCTTCCCGGTTTTGACCGGGACAGGAGCTATAGC 1095
|||| ||||||||||| | |||||||| || |||||||||||||||||||||||||||||
Sbjct 830 TCTGGTTCTTGTTGTGCTATCTTACATTTTTCCGGTTTTGACCGGGACAGGAGCTATAGC 889
Query 1096 TCTTGATCAGAAGCTATGGACTGACGGGTATTTCGCTGATATCGGTAAAGTTATAGGAGG 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TCTTGATCAGAAGCTATGGACTGACGGGTATTTCGCTGATATCGGTAAAGTTATAGGAGG 949
Query 1156 AGTTTGGTTGGGATGGTGGATTCAAGCTGCAGCTGCGACATCTAACATGGGAATGTTTTT 1215
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 950 AGCATGGTTGGGATGGTGGATTCAAGCTGCAGCTGCGACATCGAACATGGGAATGTTTTT 1009
Query 1216 GGCTGAAATGAGCAGTGATTCTTTTCAGCTACTTGGAATGGCTGAGAGGGGGATGCTTCC 1275
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1010 GGCTGAAATGAGCAGTGATTCTTTTCAGCTTCTTGGAATGGCTGAGCGGGGGATGCTTCC 1069
Query 1276 CGAGGTCTTTGCCAAGAGATCGCGCTACAGAACTCCATGGGTCGGGATACTGTTCTCGGC 1335
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1070 CGAGGTCTTTGCCAAGAGATCGCGCTACGGAACTCCATGGGTGGGGATACTGTTCTCGGC 1129
Query 1336 CTCTGGTGTGATTATCTTGTCATGGTTAAGCTTTCAAGAGATTGTGGCTGCAGAGAATCT 1395
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1130 CTCTGGTGTGATTCTCTTGTCATGGTTAAGCTTTCAAGAGATTGTGGCTGCAGAGAATTT 1189
Query 1396 GTTATACTGTTTTGGAATGGTTTTGGAATTTATTACGTTTGTGAGGTTAAGGATGAAATA 1455
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1190 GTTATACTGTTTTGGAATGGTTTTGGAGTTTATTACCTTTGTGAGGTTAAGGATGAAGTA 1249
Query 1456 TCCAGCTGCCTCAAGACCGTTCAAGATACCTGTAGGGGTTTTGGGATC-AGTCCTCATGT 1514
||| ||||| || | |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1250 TCCGGCTGCAACACGGCCGTTCAAGATACCTGTAGGGGTTTTGGGATCGA-TCCTCATGT 1308
Query 1515 GCATTCCTCCAACAGTACTGATCGGTGTCATCATGGCATTTACTAACCTGAAAGTTGCGC 1574
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1309 GCATTCCACCAACAGTGTTGATCGGTGTCATCATGGCGCTTACTAACCTGAAAGTTGCGC 1368
Query 1575 TGGTGAGCCTTGCAGCTATAGTGATTGGGCTTGTGTTGCAACCTTGTCTTAAGCAAGTGG 1634
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1369 TGGTGAGCCTTGCAGCAATAGTGATTGGGCTAGTGTTGCAACCTTGTCTTAAGCAAGTGG 1428
Query 1635 AGAAAAAGGGATGGCTCAAGTTCTCAACAAGTTCTCACCTACCAAACCTGATGGAGTAAA 1694
| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1429 AAAAAAAGGGATGGCTCAAGTTCTCAACCAGCTCTCACCTACCAAACCTGATGGAGTAA- 1487
Query 1695 GACCACCGAAGATGGTGATGCTT 1717
|||| ||||||||||||||||
Sbjct 1488 GACC---GAAGATGGTGATGCTT 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70276502025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5