BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05640.1 Length=1247 Score E Sequences producing significant alignments: (Bits) Value Ahg892490 jgi|Araly1|892490|Al_scaffold_0006_486 460 8e-129 > Ahg892490 jgi|Araly1|892490|Al_scaffold_0006_486 Length=768 Score = 460 bits (249), Expect = 8e-129 Identities = 336/377 (89%), Gaps = 10/377 (3%) Strand=Plus/Plus Query 59 GAAGCTCTTAGCAGCTTTGACTTCGATGAACTTGTAGCTTCGCTTGCTGATGCCATCGCA 118 |||||||||||||||||||| ||| | ||| ||| |||||||||| ||||| |||||||| Sbjct 7 GAAGCTCTTAGCAGCTTTGATTTCAAAGAAGTTGCAGCTTCGCTTTCTGATCCCATCGCA 66 Query 119 GCAACATCGACTC--C-CAAGCCTTTGGTGGAATTTTCACTACATGCTTTGATGGCTGAA 175 |||||| ||||| | | || | || |||| ||||||| ||||| |||| |||||||| Sbjct 67 CCAACATTGACTCAACACCAGTC-TT-GTGG-GTTTTCACCACATGATTTGTTGGCTGAA 123 Query 176 TTGTTTAAGAGAACT-AAAACCTTACCCAAAGCTGAAGTCAGCAGGACATTCTTCAGAGC 234 |||||| |||||| | ||||||||||||||||||||||||| || | |||||||||||| Sbjct 124 TTGTTTGAGAGAA-TGAAAACCTTACCCAAAGCTGAAGTCACCAATATATTCTTCAGAGC 182 Query 235 TGTTTCCA-TTGGCTTGCTGAGAGGTAACATTAGGAAAGATCAACTGGAGAGAACTTGTG 293 ||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| ||| Sbjct 183 TGTTT-CAGTTGGCTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTG 241 Query 294 ATGCTGGTAAAGCAATTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACA 353 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 ATACTGGTAAAGCAACTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACA 301 Query 354 AGGGTCAAAGAAAGCTTGTTCTAACAAACAAAACTGTGACTTTCTCAAGAATGATAGCTA 413 ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 302 AGGGTCAAAAAAAGCTTGTTCTAACTAACAAAACTTTGACTTTCTCAAGAATGATAGCTC 361 Query 414 TTTTCCCTCACTGGGCT 430 |||||||||| | |||| Sbjct 362 TTTTCCCTCATTTGGCT 378 Score = 250 bits (135), Expect = 2e-65 Identities = 160/171 (94%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 845 GAA-GCAAGTGTTACAAG-AGACAGCTTTACGATCGTTGAAGATCGGGTCAAGATCGTAA 902 ||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 600 GAAGGCAAGTGTTACAAGAAG-CAGCTTTACGATCGTTGAAGATCGGGTCAAGATTGTAA 658 Query 903 ATGATGATGCAAAGTGGGATGAGCTATTGAAAAAAG-CCAAGAGAATAGTTGATGCTTCA 961 | ||||||||||||||| | ||||||||| |||||| ||||| |||| |||||||||||| Sbjct 659 AAGATGATGCAAAGTGGCAGGAGCTATTG-AAAAAGACCAAGTGAATGGTTGATGCTTCA 717 Query 962 AGTTCAATGAGGTCTCAGGTTGCTGCTGTTGACTCCTTAGATGGAGTTTGA 1012 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 AGTTCAATGAGGTCTCAGGTTGCTGCTGTTGACTCCTTAGATGGAGTTTGA 768 Score = 206 bits (111), Expect = 4e-52 Identities = 122/127 (96%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 500 TTTCCTGCTCAAACTCATAAGCTTCCTATTGCTATGCTTCACTCTGGATTTGCTGGTCTG 559 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 382 TTTCCTGCTCAAACTCACAAGCTTCCTATTGCTATGCTTCACTCTGGATTTGCTGGTCTG 441 Query 560 ATTCCAAGAGAAAGTGATGATATGGAATTCATAGACCTTATTTGCATGTGTCACTCTGCT 619 |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 442 ATTCCAAGAGAAAGTGATGATATGGAATTCATAGACCTCCTTTGCATTTGTCACTCTGCT 501 Query 620 TT-CATG 625 || |||| Sbjct 502 TTTCATG 508 Score = 187 bits (101), Expect = 2e-46 Identities = 128/140 (91%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 1114 CTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTGATA-----AA-GC 1167 |||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 195 CTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTGATACTGGTAAAGC 254 Query 1168 AACTCTCAAAAGAGTTACTGCAACTCTTGGGATTGTAATCAGAGACAAGGGTCaaaaaaa 1227 |||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||| Sbjct 255 AACTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACAAGGGTCAAAAAAA 314 Query 1228 GATTGTTCTAACTAACAAAA 1247 | |||||||||||||||||| Sbjct 315 GCTTGTTCTAACTAACAAAA 334 Score = 106 bits (57), Expect = 4e-22 Identities = 87/100 (87%), Gaps = 7/100 (7%) Strand=Plus/Plus Query 667 TTTTCATGCATTGTACGAGAATCAGAAAAGATATACCGAGGCTGCTCGTGGA-TCTGGAT 725 |||||||||| ||||||||||||||||||||||||||||||||||||| | | | ||||| Sbjct 501 TTTTCATGCACTGTACGAGAATCAGAAAAGATATACCGAGGCTGCTCG-GAAATTTGGAT 559 Query 726 TCAATTC-TGATGAAAATAGGATCG-TTT-ATCTTTTGAG 762 | | ||| ||||||| ||||||||| ||| | |||| ||| Sbjct 560 TGA-TTCCTGATGAAGATAGGATCGGTTTCAACTTT-GAG 597 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46586204574 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5