BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05640.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892490 jgi|Araly1|892490|Al_scaffold_0006_486 460 8e-129
> Ahg892490 jgi|Araly1|892490|Al_scaffold_0006_486
Length=768
Score = 460 bits (249), Expect = 8e-129
Identities = 336/377 (89%), Gaps = 10/377 (3%)
Strand=Plus/Plus
Query 59 GAAGCTCTTAGCAGCTTTGACTTCGATGAACTTGTAGCTTCGCTTGCTGATGCCATCGCA 118
|||||||||||||||||||| ||| | ||| ||| |||||||||| ||||| ||||||||
Sbjct 7 GAAGCTCTTAGCAGCTTTGATTTCAAAGAAGTTGCAGCTTCGCTTTCTGATCCCATCGCA 66
Query 119 GCAACATCGACTC--C-CAAGCCTTTGGTGGAATTTTCACTACATGCTTTGATGGCTGAA 175
|||||| ||||| | | || | || |||| ||||||| ||||| |||| ||||||||
Sbjct 67 CCAACATTGACTCAACACCAGTC-TT-GTGG-GTTTTCACCACATGATTTGTTGGCTGAA 123
Query 176 TTGTTTAAGAGAACT-AAAACCTTACCCAAAGCTGAAGTCAGCAGGACATTCTTCAGAGC 234
|||||| |||||| | ||||||||||||||||||||||||| || | ||||||||||||
Sbjct 124 TTGTTTGAGAGAA-TGAAAACCTTACCCAAAGCTGAAGTCACCAATATATTCTTCAGAGC 182
Query 235 TGTTTCCA-TTGGCTTGCTGAGAGGTAACATTAGGAAAGATCAACTGGAGAGAACTTGTG 293
||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct 183 TGTTT-CAGTTGGCTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTG 241
Query 294 ATGCTGGTAAAGCAATTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACA 353
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATACTGGTAAAGCAACTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACA 301
Query 354 AGGGTCAAAGAAAGCTTGTTCTAACAAACAAAACTGTGACTTTCTCAAGAATGATAGCTA 413
||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 302 AGGGTCAAAAAAAGCTTGTTCTAACTAACAAAACTTTGACTTTCTCAAGAATGATAGCTC 361
Query 414 TTTTCCCTCACTGGGCT 430
|||||||||| | ||||
Sbjct 362 TTTTCCCTCATTTGGCT 378
Score = 250 bits (135), Expect = 2e-65
Identities = 160/171 (94%), Gaps = 5/171 (3%)
Strand=Plus/Plus
Query 845 GAA-GCAAGTGTTACAAG-AGACAGCTTTACGATCGTTGAAGATCGGGTCAAGATCGTAA 902
||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct 600 GAAGGCAAGTGTTACAAGAAG-CAGCTTTACGATCGTTGAAGATCGGGTCAAGATTGTAA 658
Query 903 ATGATGATGCAAAGTGGGATGAGCTATTGAAAAAAG-CCAAGAGAATAGTTGATGCTTCA 961
| ||||||||||||||| | ||||||||| |||||| ||||| |||| ||||||||||||
Sbjct 659 AAGATGATGCAAAGTGGCAGGAGCTATTG-AAAAAGACCAAGTGAATGGTTGATGCTTCA 717
Query 962 AGTTCAATGAGGTCTCAGGTTGCTGCTGTTGACTCCTTAGATGGAGTTTGA 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTTCAATGAGGTCTCAGGTTGCTGCTGTTGACTCCTTAGATGGAGTTTGA 768
Score = 206 bits (111), Expect = 4e-52
Identities = 122/127 (96%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 500 TTTCCTGCTCAAACTCATAAGCTTCCTATTGCTATGCTTCACTCTGGATTTGCTGGTCTG 559
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TTTCCTGCTCAAACTCACAAGCTTCCTATTGCTATGCTTCACTCTGGATTTGCTGGTCTG 441
Query 560 ATTCCAAGAGAAAGTGATGATATGGAATTCATAGACCTTATTTGCATGTGTCACTCTGCT 619
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 442 ATTCCAAGAGAAAGTGATGATATGGAATTCATAGACCTCCTTTGCATTTGTCACTCTGCT 501
Query 620 TT-CATG 625
|| ||||
Sbjct 502 TTTCATG 508
Score = 187 bits (101), Expect = 2e-46
Identities = 128/140 (91%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 1114 CTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTGATA-----AA-GC 1167
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 195 CTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTGATACTGGTAAAGC 254
Query 1168 AACTCTCAAAAGAGTTACTGCAACTCTTGGGATTGTAATCAGAGACAAGGGTCaaaaaaa 1227
|||| ||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 255 AACTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACAAGGGTCAAAAAAA 314
Query 1228 GATTGTTCTAACTAACAAAA 1247
| ||||||||||||||||||
Sbjct 315 GCTTGTTCTAACTAACAAAA 334
Score = 106 bits (57), Expect = 4e-22
Identities = 87/100 (87%), Gaps = 7/100 (7%)
Strand=Plus/Plus
Query 667 TTTTCATGCATTGTACGAGAATCAGAAAAGATATACCGAGGCTGCTCGTGGA-TCTGGAT 725
|||||||||| ||||||||||||||||||||||||||||||||||||| | | | |||||
Sbjct 501 TTTTCATGCACTGTACGAGAATCAGAAAAGATATACCGAGGCTGCTCG-GAAATTTGGAT 559
Query 726 TCAATTC-TGATGAAAATAGGATCG-TTT-ATCTTTTGAG 762
| | ||| ||||||| ||||||||| ||| | |||| |||
Sbjct 560 TGA-TTCCTGATGAAGATAGGATCGGTTTCAACTTT-GAG 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5