BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05670.2
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487367 jgi|Araly1|487367|fgenesh2_kg.6__501__AT5G05670.1 1631 0.0
Ahg903959 jgi|Araly1|903959|Al_scaffold_0003_1087 902 0.0
Ahg894641 jgi|Araly1|894641|Al_scaffold_0006_2637 896 0.0
Ahg905565 jgi|Araly1|905565|Al_scaffold_0003_2693 773 0.0
Ahg900138 jgi|Araly1|900138|Al_scaffold_0004_788 387 1e-106
Ahg895170 jgi|Araly1|895170|Al_scaffold_0006_3166 224 1e-57
> Ahg487367 jgi|Araly1|487367|fgenesh2_kg.6__501__AT5G05670.1
Length=1086
Score = 1631 bits (883), Expect = 0.0
Identities = 965/1004 (96%), Gaps = 8/1004 (1%)
Strand=Plus/Plus
Query 102 GGTTTTGAACAGCTTGGCAGAAGAAGTGAAACTTGAGAG--AGTAATGGAGAACTTGGAA 159
|||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 87 GGTTTTAAACAGCTTGGCAGAAGAAGTGAAACTTGAGAGAAAGAAATGGAGAACTTGGAA 146
Query 160 GATCTGAAAATTCTGGCTGAGCAGTGGTCGCATCAAGGAATTGAATATCTTCAGAAGATA 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 GATCTGAAAATTCTGGCTGAGCAGTGGTCGCATCAAGGAATTGAATATCTTCAGAAGATA 206
Query 220 CCACCGAA-TCAGCTGTATGCCGCCATTGGTGTTTTGTTGTTTACAACCATCTTGCTCTT 278
||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 207 CCACC-AACTCAGCTGTATGCCGCTATTGGTGTTCTGTTGTTTACAACCATCTTGCTCTT 265
Query 279 CCTATCCATTCGCCTGGTCAGACGTACCAAATCCAACACTGTACTCCTTTCTGGGCTGAC 338
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 CCTATCCATTCGCTTGGTCAGACGTACCAAATCCAACACTGTACTCCTTTCTGGGCTGAG 325
Query 339 CGGAAGTGGAAAGACTGTGCTCTTTTACCAACTCCGAGATGGATCGTCGCATCAGGGCAC 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CGGAAGTGGAAAGACTGTGCTCTTTTACCAACTCCGAGATGGATCGTCGCATCAGGGCAC 385
Query 399 TGTAACATCAATGGAACCAAATGAAGGCACTTTTGTTCTTCACAGTGAAAATACTAAGAA 458
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 386 TGTAACATCAATGGAACCAAATGAAGGCACTTTTGTTCTTCACAGTGAAAACACTAAGAA 445
Query 459 AGGAAAAATCAAGCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGACCCAA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 AGGAAAAATCAAGCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGACCCAA 505
Query 519 GCTAGAAGAATTCTTGCCCCAAGCAGCTGCCATTGTGTTCGTAGTGGATGCCTTGGAGTT 578
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GCTAGAAGAATTCTTGCCTCAAGCAGCTGCCATTGTGTTCGTAGTGGATGCCTTGGAGTT 565
Query 579 CCTCCCAAACTGTCGTGCAGCTTCAGAGTACCTATACGAGATTCTGACCAATGCGAATGT 638
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 566 CCTCCCAAACTGCCGTGCAGCTTCAGAGTACCTATACGACATTTTGACCAATGCGAATGT 625
Query 639 TGTCAAGAAGAAGATTCCAGTCCTCCTTTGCTGTAACAAGACCGATAAACTCACTGCACA 698
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TGTCAAGAAAAAGATTCCAGTCCTCCTTTGCTGTAACAAGACCGATAAACTCACTGCACA 685
Query 699 CACCAAGGAGTTTATCCGGAAGCAAATGGAGAAAGAAATTGAGAAACTGAGGGCTTCAAG 758
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 686 CACCAAGGAGTTTATCCGGAAGCAGATGGAGAAAGAAATTGAGAAACTGAGGGCTTCAAG 745
Query 759 GAGTGCAGTCTCTACTGCTGATATAGCGAATGACTTCACCATTGGAATTGAGGGAGAAGT 818
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 746 GAGTGCAGTCTCTACAGCTGATATAGCGAATGACTTCACCATTGGGATCGAGGGAGAAGT 805
Query 819 GTTCTCCTTCACGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTTACCGG 878
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GTTCTCCTTCTCGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTTACCGG 865
Query 879 AGAAACCATCCAGATTGAAGACTTCATTCGAGAATACATCAAGCCATGAGCTCCAACATG 938
||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 866 AGAAACCGTACAGATCGAAGACTTCATTCGGGAATACATCAAGCCATGAGCTCCAACGTG 925
Query 939 CCTTCATAGATTGAATCTACCACAAGTTTCTTATGCTTTGGGCTGTGACTTTGATTTGAG 998
| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 926 CATTCATAGATTGAATCTACCACAAGATTCTTATGCTTTGCTCTGTGACTTTGATTTGAG 985
Query 999 TTTAGAGATCC-TTTTGTATATGAGATCTTTGGATGATTTAGGGTGTTCAAAACTGAGTA 1057
||||||||||| ||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 986 TTTAGAGATCCCTTTTGTATATGAGATCTTTGGAT--TT-AGGGAGTTCAAAACTGAGTA 1042
Query 1058 GCTGTATTTTCGAGTTAGATAATCTGTTTTAAATCGGAATGATT 1101
||||||||||||||||||||||| |||||| |||| || |||||
Sbjct 1043 GCTGTATTTTCGAGTTAGATAATTTGTTTTTAATCAGAGTGATT 1086
Score = 106 bits (57), Expect = 4e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 CCGTGTTCTTCTCCGCTTCCACCGTCGTTGTATTCGTCTTCCGCCTCCTCTCCCATCGGT 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 30 CCGTGTTCTTCTCCGCTTCCACCGTCGTTGTATTTGTCTTCCGCCTCCTCTCCCATCGGT 89
> Ahg903959 jgi|Araly1|903959|Al_scaffold_0003_1087
Length=633
Score = 902 bits (488), Expect = 0.0
Identities = 575/618 (93%), Gaps = 1/618 (0%)
Strand=Plus/Plus
Query 370 CTCCGAGATGGATCGTCGCATCAGGGCACTGTAACATCAATGGAACCAAATGAAGGCACT 429
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 16 CTCCGAGATGGATCGTCGCACCAGGGTACTGTAACATCAATGGAACCGAATGAAGGCACT 75
Query 430 TTTGTTCTTCACAGTGAAAATACTAAGAAAGGAAAAATCAAGCCTGTTCATCTTGTTGAT 489
|| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 76 TTCGTTCTTCACACTGAAAACACTAAGAAAGGAAAAATCAATCCTGTTCATCTTGTTGAT 135
Query 490 GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTAGAAGAATTCTTGCCCCAAGCAGCTGCC 549
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 136 GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTTGAAGAATTCTTGCCCCAAGCAGCTGCC 195
Query 550 ATTGTGTTCGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTAC 609
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATTGTGTTTGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTAC 255
Query 610 CTATACGAGATTCTGACCAATGCGAATGTTGTCAAGAAGAAGATTCCAGTCCTCCTTTGC 669
||||| || ||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 256 CTATATGATATTTTGACCAATGCGAATGTTGTCAAGAACAAGATTTCAGTCCTCCTTTGC 315
Query 670 TGTAACAAGACCGATAAACTCACTGCACACACCAAGGAGTTTATCCGGAAGCAAATGGAG 729
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 316 TGTAACAAGACAGATAAACTCACTGCACACACCAAGGAGTTTATTCGGAAGCAGATGGAG 375
Query 730 AAAGAAATTGAGAAACTGAGGGCTTCAAGGAGTGCAGTCTCTACTGCTGATATAGCGAAT 789
||||||||||||||| |||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 376 AAAGAAATTGAGAAATTGAGGGCTTCTAGGAGTGCGGTATCTACAGCTGATATAGCGAAC 435
Query 790 GACTTCACCATTGGAATTGAGGGAGAAGTGTTCTCCTTCACGCATTGCTCCAACAAAGTC 849
||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||
Sbjct 436 GACTTCAGCATTGGAATTGAAGGAGAAGTGTTCTCCTTCTCGCATTGCTACAACAAAGTC 495
Query 850 ACTGTCGCTGAGGCATCTGGACTTACCGGAGAAACCATCCAGATTGAAGACTTCATTCGA 909
||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 496 ACTGTAGCTGAGGCATCTGGACTCACCGGAGAAACCGTCCAGATCCAAGACTTCATTCGA 555
Query 910 GAATACATCAAGCCATGAGCTCCAACATGCCTTCATAGATTGAATCTACCACAAGTTTCT 969
|||||||||||||| | ||||| ||| ||| || ||||||||||||||| || || ||||
Sbjct 556 GAATACATCAAGCCTTTAGCTCAAACGTGCATTAATAGATTGAATCTACGACTAGATTCT 615
Query 970 TATGC-TTTGGGCTGTGA 986
||||| ||||| ||||||
Sbjct 616 TATGCCTTTGGTCTGTGA 633
> Ahg894641 jgi|Araly1|894641|Al_scaffold_0006_2637
Length=633
Score = 896 bits (485), Expect = 0.0
Identities = 574/618 (93%), Gaps = 1/618 (0%)
Strand=Plus/Plus
Query 370 CTCCGAGATGGATCGTCGCATCAGGGCACTGTAACATCAATGGAACCAAATGAAGGCACT 429
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 16 CTCCGAGATGGATCGTCGCACCAGGGTACTGTAACATCAATGGAACCGAATGAAGGCACT 75
Query 430 TTTGTTCTTCACAGTGAAAATACTAAGAAAGGAAAAATCAAGCCTGTTCATCTTGTTGAT 489
|| |||||||||| |||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 76 TTCGTTCTTCACACTGAAAACACTAAGAAAGGAAAAATCAATCATGTTCATCTTGTTGAT 135
Query 490 GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTAGAAGAATTCTTGCCCCAAGCAGCTGCC 549
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 136 GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTTGAAGAATTCTTGCCCCAAGCAGCTGCC 195
Query 550 ATTGTGTTCGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTAC 609
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATTGTGTTTGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTAC 255
Query 610 CTATACGAGATTCTGACCAATGCGAATGTTGTCAAGAAGAAGATTCCAGTCCTCCTTTGC 669
||||| || ||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 256 CTATATGATATTTTGACCAATGCGAATGTTGTCAAGAACAAGATTTCAGTCCTCCTTTGC 315
Query 670 TGTAACAAGACCGATAAACTCACTGCACACACCAAGGAGTTTATCCGGAAGCAAATGGAG 729
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 316 TGTAACAAGACAGATAAACTCACTGCACACACCAAGGAGTTTATTCGGAAGCAGATGGAG 375
Query 730 AAAGAAATTGAGAAACTGAGGGCTTCAAGGAGTGCAGTCTCTACTGCTGATATAGCGAAT 789
||||||||||||||| |||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 376 AAAGAAATTGAGAAATTGAGGGCTTCTAGGAGTGCGGTATCTACAGCTGATATAGCGAAC 435
Query 790 GACTTCACCATTGGAATTGAGGGAGAAGTGTTCTCCTTCACGCATTGCTCCAACAAAGTC 849
||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||
Sbjct 436 GACTTCAGCATTGGAATTGAAGGAGAAGTGTTCTCCTTCTCGCATTGCTACAACAAAGTC 495
Query 850 ACTGTCGCTGAGGCATCTGGACTTACCGGAGAAACCATCCAGATTGAAGACTTCATTCGA 909
||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 496 ACTGTAGCTGAGGCATCTGGACTCACCGGAGAAACCGTCCAGATCCAAGACTTCATTCGA 555
Query 910 GAATACATCAAGCCATGAGCTCCAACATGCCTTCATAGATTGAATCTACCACAAGTTTCT 969
|||||||||||||| | ||||| ||| ||| || ||||||||||||||| || || ||||
Sbjct 556 GAATACATCAAGCCTTTAGCTCAAACGTGCATTAATAGATTGAATCTACGACTAGATTCT 615
Query 970 TATGC-TTTGGGCTGTGA 986
||||| ||||| ||||||
Sbjct 616 TATGCCTTTGGTCTGTGA 633
> Ahg905565 jgi|Araly1|905565|Al_scaffold_0003_2693
Length=585
Score = 773 bits (418), Expect = 0.0
Identities = 496/534 (93%), Gaps = 3/534 (1%)
Strand=Plus/Plus
Query 455 AGAAAGGAAAAATCAAGCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGAC 514
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AGAAAGGAAAAATCAATCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGAC 112
Query 515 CCAAGCTAGAAGAATTCTTGCCCCAAGCAGCTGCCATTGTGTTCGTAGTGGATGCCTTGG 574
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 113 CCAAGCTTGAAGAATTCTTGCCCCAAGCAGCTGCCATTGTGTTTGTAGTGGATGCCTTGG 172
Query 575 AGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTACCTATACGAGATTCTGACCAATGCGA 634
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 173 AGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTACCTATATGATATTTTGACCAATGCGA 232
Query 635 ATGTTGTCAAGAAGAAGATTCCAGTCCTCCTTTGCTGTAACAAGACCGATAAACTCACTG 694
||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 233 ATGTTGTCAAGAACAAGATTTCAGTCCTCCTTTGCTGTAACAAGACAGATAAACTCACTG 292
Query 695 CACACACCAAGGAGTTTATCCGGAAGCAAATGGAGAAAGAAATTGAGAAACTGAGGGCTT 754
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 293 CACACACCAAGGAGTTTATTCGGAAGCAGATGGAGAAAGAAATTGAGAAATTGAGGGCTT 352
Query 755 CAAGGAGTGCAGTCTCTACT-GCTGATATAGCGAATGACTTCACCATTGGAATTGAGGGA 813
| |||||||| || |||| | |||||||||||||| ||||||| |||||||||||| |||
Sbjct 353 CTAGGAGTGCGGTATCTA-TAGCTGATATAGCGAACGACTTCAGCATTGGAATTGAAGGA 411
Query 814 GAAGTGTTCTCCTTCACGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTT 873
||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 412 GAAGTGTTCTCCTTCTCGCATTGCTACAACAAAGTCACTGTAGCTGAGGCATCTGGACTC 471
Query 874 ACCGGAGAAACCATCCAGATTGAAGACTTCATTCGAGAATACATCAAGCCATGAGCTCCA 933
|||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||| |
Sbjct 472 ACCGGAGAAACCGTCCAGATCCAAGACTTCATTCGAGAATACATCAAGCCTTTAGCTCAA 531
Query 934 ACATGCCTTCATAGATTGAATCTACCACAAGTTTCTTATGC-TTTGGGCTGTGA 986
|| ||| || ||||||||||||||| || || ||||||||| ||||| ||||||
Sbjct 532 ACGTGCATTAATAGATTGAATCTACGACTAGATTCTTATGCCTTTGGTCTGTGA 585
> Ahg900138 jgi|Araly1|900138|Al_scaffold_0004_788
Length=414
Score = 387 bits (209), Expect = 1e-106
Identities = 227/236 (96%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 370 CTCCGAGATGGATCGTCGCATCAGGGCACTGTAACATCAATGGAACCAAATGAAGGCACT 429
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 16 CTCCGAGATGGATCGTCGCACCAGGGTACTGTAACATCAATGGAACCGAATGAAGGCACT 75
Query 430 TTTGTTCTTCACAGTGAAAATACTAAGAAAGGAAAAATCAAGCCTGTTCATCTTGTTGAT 489
|| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 76 TTCGTTCTTCACACTGAAAACACTAAGAAAGGAAAAATCAATCCTGTTCATCTTGTTGAT 135
Query 490 GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTAGAAGAATTCTTGCCCCAAGCAGCTGCC 549
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 136 GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTTGAAGAATTCTTGCCCCAAGCAGCTGCC 195
Query 550 ATTGTGTTCGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGA 605
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATTGTGTTTGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGA 251
Score = 145 bits (78), Expect = 8e-34
Identities = 98/108 (91%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 820 TTCTCCTTCACGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTTACCGGA 879
||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 307 TTCTCCTTCTCGCATTGCTACAACAAAGTCATTGTAGCTGAGGCATCTGGACTCACCGGA 366
Query 880 GAAACCATCCAGATTGAAGACTTCATTCGAGAATACATCAAGCCATGA 927
|||| | ||||||| |||||||||||||||||||||||||||| |||
Sbjct 367 GAAAACGTCCAGATCCAAGACTTCATTCGAGAATACATCAAGCCTTGA 414
> Ahg895170 jgi|Araly1|895170|Al_scaffold_0006_3166
Length=399
Score = 224 bits (121), Expect = 1e-57
Identities = 153/169 (91%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 786 GAATGACTTCACCATTGGAATTGAGGGAGAAGTGTTCTCCTTCACGCATTGCTCCAACAA 845
||| ||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct 60 GAACGACTTCAGCATTGGAATTGAAGGAGAAGTGTTCTCCTTCTCGCATTGCTACAACAA 119
Query 846 AGTCACTGTCGCTGAGGCATCTGGACTTACCGGAGAAACCATCCAGATTGAAGACTTCAT 905
||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 120 AGTCACTGTAGCTGAGGCATCTGGACTCACCGGAGAAACCGTCCAGATCCAAGACTTCAT 179
Query 906 TCGAGAATACATCAAGCCATGAGCTCCAACATGCCTTCATAGATTGAAT 954
|||||||||||||||||| | ||||| ||| ||| || |||||||||||
Sbjct 180 TCGAGAATACATCAAGCCTTTAGCTCAAACGTGCATTAATAGATTGAAT 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5