BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05680.1 Length=2698 Score E Sequences producing significant alignments: (Bits) Value Ahg487368 jgi|Araly1|487368|fgenesh2_kg.6__502__AT5G05680.1 4139 0.0 Ahg939954 jgi|Araly1|939954|scaffold_600498.1 815 0.0 > Ahg487368 jgi|Araly1|487368|fgenesh2_kg.6__502__AT5G05680.1 Length=2675 Score = 4139 bits (2241), Expect = 0.0 Identities = 2526/2663 (95%), Gaps = 22/2663 (1%) Strand=Plus/Plus Query 49 TCTGCATCTCCTTCCGACGAAAACAGATACACTCGAGT----GA-AGAAAGTATGA-AAT 102 |||||||| || |||||||| ||||||||||| |||| || ||||||||||| || Sbjct 22 TCTGCATCGCCGGCCGACGAACACAGATACACTTGAGTGAAAGAGAGAAAGTATGAGAA- 80 Query 103 TTAACTTTAACGAGACAGAGGATGCACCAGATTCACGACGATCTCCGACGCCCAAAGAGC 162 ||||||| | ||| |||||||| | ||||||||||| || || |||||||| ||||||| Sbjct 81 TTAACTTCCAGGAGCCAGAGGATACGCCAGATTCACGGCGGTCCCCGACGCCTAAAGAGC 140 Query 163 CGGTTAGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAG 222 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 CGGTTCGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAG 200 Query 223 ATGAACCCGCCGTGTCGCAGCTGTTTCCGAGAAATTTCATGGCTTGGGACGGAGACTCGC 282 |||||||| || |||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 201 ATGAACCCACCCCGTCGCAGCGGTTTCCGAGGAATTTCATGGCTTGGGACGGAGACTCGC 260 Query 283 G-CGTATACTACTGGGATTCGAGACGATATCTCCTTCACCGATTATCTCTGCGCTTGGGT 341 | | |||||||||||||||| ||||||||||| || || ||||||||||||||||||||| Sbjct 261 GAC-TATACTACTGGGATTCTAGACGATATCTTCTACATCGATTATCTCTGCGCTTGGGT 319 Query 342 GAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTT 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 GAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTT 379 Query 402 CAGGTGACATTTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTT 461 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 CAGATGACAATTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTT 439 Query 462 GCCGGCTCAGATGGGATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGATAGAAGAC 521 |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 440 GCCGGCTCAGATGGAATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGGTAGAAGAT 499 Query 522 AATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTAGTGACAGTGCC 581 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 500 AATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTGGTGACAGTGCC 559 Query 582 ATAACCTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCC 641 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 560 ATAAACTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCC 619 Query 642 TCGGATGCAGTTTTCAGGCTTTTCGATTTGTCTTCA-GATACTGAGCTACCAGAGCAAGA 700 || |||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||| Sbjct 620 TCAGATGCAGTTTTCAGGCTTTTCGATTTATCTT-ACGATGCTGAGCTACCAGAGCAAGA 678 Query 701 ATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGC 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 679 ATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGC 738 Query 761 TGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTATATTATTCAC 820 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 739 TGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTTTATTATTCAC 798 Query 821 TGATGGTTCAATTTATATCTTATGCCCCGTTGTGCCATTTGGAAGTGTTTACAAATGGGA 880 ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| Sbjct 799 TGATGGTTCAATTTATATCCTGTGCCCAGTTGTGCCATTTGGAAGTGTTTACAAATGGGA 858 Query 881 ATCCG-TAATGGAGATTTACAACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCG- 938 ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 859 ATC-GATAATGGAGATTTACCACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCGA 917 Query 939 TTAGCAGTTAGCAACTCCAGTCTGGCTATTGAATGGTTGGAAGCTACATTTCCAGATTTG 998 || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 918 TT-GCAGTGAGCAACTCCAGTCTGGCAATTGAATGGTTGGAAGCTACATTTCCAGATTTG 976 Query 999 ACTGAGCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCAGCCTTATGCTTTG 1058 ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 977 ACTGAACAAGGAACCAGAGGTGAAAATATATTGGTCGTGAAAGCTCATCCTTATGCTTTG 1036 Query 1059 CTTGACGCATCACTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGAT 1118 |||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1037 CTTGACGCATCATTAGCTTTACAGGGCCCTTTATATAAAGCATCTAATGGTGACGGAGAT 1096 Query 1119 GAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATTATATAAT 1178 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1097 GAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGGCGGGCAGTGAGTCTATTATATAAT 1156 Query 1179 CTTGTTAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGAT 1238 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1157 CTTGTCAGCAAAGATTCGATCCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGAT 1216 Query 1239 GCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATG 1298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1217 GCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATG 1276 Query 1299 AACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAAGTGAGCTT 1358 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1277 AACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAGGTGAGCTT 1336 Query 1359 CCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCACCACCA 1418 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1337 CCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCGCCGCCA 1396 Query 1419 CTGTTAAGACTTGCAATGGTTGATTTGGCTCTCCCCAAAATGCGTGAAGGTGGCTCTCTT 1478 |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1397 CTGTTAAGACTTGCAATGGTTGATTTGGCTCTTCCCACACGGCGTGAAGGTGGCTCTCTT 1456 Query 1479 GTTACCTTGTTTGCTGACTCCCTTTTGCCAGAACGAATATACTCCCTTCACGACGGTGGC 1538 ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct 1457 GTTACCTTGTTTGCTGATTCTCTTTTGCCAGAACGAATATACTCCCTCCACGACGGTGGC 1516 Query 1539 ATTGATTCAACAGTCTTACACTCTCTTCCCTTCACAAGTCAGGCCAGTGGAAAAGATGAA 1598 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1517 ATTGATTCAACAGTCTTACACTCTCTTCCCTTTACAAGTCAGGCCACTGGAAAAGATGAA 1576 Query 1599 GCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTA 1658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1577 GCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTA 1636 Query 1659 TCTCCTTTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGGTATTCATGGATCGTTGCA 1718 |||||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||||| Sbjct 1637 TCTCCTCTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGTTATGCATGGATCATTGCA 1696 Query 1719 GTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACTTGGGATCTCTTGCTTCCA 1778 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1697 GTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACCTGGGATCTGTTGCTTCCA 1756 Query 1779 ATTCATGTCAGTACGGATAAGACAGTGTCTTCAAGCGCAATAGAGAAAAAAGAGCAAGAG 1838 |||||||| |||| ||||||||||| |||||||| | ||||||||||||||||||||| Sbjct 1757 ATTCATGTTGGTACAGATAAGACAGTATCTTCAAGTGAAATAGAGAAAAAAGAGCAAGAT 1816 Query 1839 AACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCGCCCCAC 1898 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1817 AACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCTCCCCAT 1876 Query 1899 GCTTTACCTAACCAGCGTTCAACTCCAGCCAATTCCGTAGAAGGCAGATCAATTCTGCTT 1958 |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1877 GCTTTACCTACCCAGCGTTCAACTCCAGCCAATTCTGTAGAAGGCCGATCAATTCTGCTT 1936 Query 1959 GACTATGTCAAACTTTTCCATGAAAACTACATCGAATATGCACACAAGGTCCACTTTGAG 2018 ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1937 GACTATGTCAAGCTTTTCCATGAAAACTACATCGAATATGCCCACAAGGTCTACTTTGAG 1996 Query 2019 CTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCT 2078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1997 CTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCT 2056 Query 2079 GAGGCAAATGAGAAAATATCAAAAGTTGAGAAAAACCAATCTTTTCTGGAGAAAAGGATT 2138 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 2057 GAGGCAAATGAGAAAATATCAAAAGTTGACAAGAACCAATCTTTTCTGGAGAAAAGGATT 2116 Query 2139 GACAAAGCAATTGAAAGACATGATTCTCTTGAACAATGCTTGCAACGTCTCCGTAGCTTG 2198 |||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 2117 GACAAAGCAATTCAAAGACATGATTCTCTTGAGCAACGCTTGCAACGTCTCCGTAGCTTG 2176 Query 2199 CCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAATCGGAGCTCGAT 2258 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2177 CCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAGTCGGAGCTCGAT 2236 Query 2259 CAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATCGAAACACTGAGAGCAAGA 2318 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2237 CAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATTGAAACACTGAGAGCAAGA 2296 Query 2319 GTGAAGAAGTCAACTCAAAAATCTCACAAGGGCACAGTAGTCGCAGCTAGTCAGAAAAAG 2378 ||||| |||||| |||||||||||| |||||||||||| |||||||||| |||||||||| Sbjct 2297 GTGAAAAAGTCAGCTCAAAAATCTCCCAAGGGCACAGTCGTCGCAGCTACTCAGAAAAAG 2356 Query 2379 CAGTATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTC 2438 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2357 CAATATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTC 2416 Query 2439 GCCAAACTATCCCTGATGAATAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCG 2498 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2417 GCCAAACTATCCCTGATGAACAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCG 2476 Query 2499 CTGAAATCGCAAGAAAGCAGTTTCATGTAGTCACTCACTGTAACAGGGACGCAGTTATCA 2558 ||||| ||||||||||||||||||||||||||||| | | || |||||||| |||||| Sbjct 2477 CTGAAGTCGCAAGAAAGCAGTTTCATGTAGTCACTG--TATCACTGGGACGCAATTATCA 2534 Query 2559 TTTCCTTGACTGACTAAA--TCCTGTTCAAATTTGAATATATGT-GCTGCACCAAATTTT 2615 |||||| ||||||||| | | ||||||||||||||||||| || ||| ||| ||||||| Sbjct 2535 TTTCCTGGACTGACTAGAGGTTCTGTTCAAATTTGAATATA-GTTGCTACACTAAATTTT 2593 Query 2616 CTAACTCTCTCCTTGTAAGTTTTGTCTGTTAAATCAAACTACGGTATTACTTTAATTTGT 2675 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 2594 CTAACTCTCTCCTTGTAAGTTTTGTCTGTTAA-TCAAGCTACGGTATTACTTTAATTTGT 2652 Query 2676 CTCTACAAATGGTCATTTTCTGC 2698 |||| |||| |||||||||||| Sbjct 2653 CTCTGTAAATTGTCATTTTCTGC 2675 > Ahg939954 jgi|Araly1|939954|scaffold_600498.1 Length=961 Score = 815 bits (441), Expect = 0.0 Identities = 505/536 (94%), Gaps = 3/536 (1%) Strand=Plus/Plus Query 129 CCAGATTCACGACGATCTCCGACGCCCAAAGAGCCGGTTAGGTGGGTTCCTCTCCAGAGC 188 ||||||||||| |||| ||||| ||| |||||||||||| |||||||||||||||||||| Sbjct 2 CCAGATTCACGGCGATATCCGATGCCTAAAGAGCCGGTTCGGTGGGTTCCTCTCCAGAGC 61 Query 189 CACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAGATGAACCCGCCGTGTCGCAGCTG-TT 247 ||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| | || Sbjct 62 CACCCGGTTTTCGCTTCTCTTCCATCCTCCCAGGATGAACTCGCCGCGTCGCAGC-GTTT 120 Query 248 TCCGAGAAATTTCATGGCTTGGGACGGAGACTCGCGCGTATACTACTGGGATTCGAGACG 307 |||||||||||| ||||||||||||||||||| |||| |||||||||||||||| | ||| Sbjct 121 TCCGAGAAATTTGATGGCTTGGGACGGAGACTGGCGCCTATACTACTGGGATTCTAAACG 180 Query 308 ATATCTCCTTCACCGATTATCTCTGCGCTTGGGTGAACCTGAACCATCCTCCGTCCTCGC 367 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 181 ATATCTCCTTCACCGATTATCTCTGCGCTTGGGTGAGCCTGAACCATCATCCGTCCTCGC 240 Query 368 CGCAGTCCCGTCCAAGGTGATGCAACCAGACCTTCAGGTGACATTTTCTGTTAGCAAAAT 427 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 241 CGCAGTCCCGTCCAAGGTGATGCAACCAGACCTTCAACTGACATTTTCTGTTAGCAAAAT 300 Query 428 CTCCATCAATAAGTCTGGATCAGCTGTACTTCTTGCCGGCTCAGATGGGATATGTGTGAT 487 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 301 CTCCATTAATAAGTCTGGATCAGCTGTACTTCTTGCCGGCTCAGATGGAATATGTGTGAT 360 Query 488 GTACCTATTTGGACGTGCTTCTGTGATAGAAGACAATGTCATTTGCAGGGTAGTTTCTAT 547 ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 361 GTACCTATTTGGACGTGCTTCTGTGGTAGAATACAATATCATTTGCAGGGTAGTTTCTAT 420 Query 548 TGGTTCAGAAATCTATACTAGTAGTGACAGTGCCATAACCTTGCTACAAGCATCGTGGCA 607 |||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||| Sbjct 421 TGGTTCAGAAATCTATACTAGTGGTGACAATGCCATAAACTTGCTACAAGCATTGTGGCA 480 Query 608 CCCTGATAGTGACACCCATTTGGGAATTCTATCCTCGGATGCAGTTTTCAGGCTTT 663 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 481 CCCTGATAGTGACACCCATTTGGAAATTCTATCCTCGGATGCAGTTTTCAG-CTTT 535 Score = 379 bits (205), Expect = 5e-104 Identities = 215/220 (98%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1004 GCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCAGCCTTATGCTTTGCTTGA 1063 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 655 GCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCATCCTTATGCTTTGCTTGA 714 Query 1064 CGCATCACTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGATGAAGA 1123 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 CGCATCATTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGATGAAGA 774 Query 1124 TTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATTATATAATCTTGT 1183 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 775 TTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATCATATAATCTTGT 834 Query 1184 TAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCTGGA 1223 ||||||||||||||||||||||||||||||||||| ||| Sbjct 835 CAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCAGGA 874 Score = 100 bits (54), Expect = 4e-20 Identities = 65/70 (93%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 805 TCTTTATATTATTCACTGATGGTTCAATTTATATCTTATGCCCCGTTGTGCCATTTGGAA 864 ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| Sbjct 582 TCTTTATATTATTCACTGATGGTTCAATTTATATCCTGTGCCCAGTTGTGCCATTTGGAA 641 Query 865 GTGTTTACAA 874 | ||||||| Sbjct 642 GA-TTTACAA 650 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101777134640 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5