BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05680.1
Length=2698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487368 jgi|Araly1|487368|fgenesh2_kg.6__502__AT5G05680.1 4139 0.0
Ahg939954 jgi|Araly1|939954|scaffold_600498.1 815 0.0
> Ahg487368 jgi|Araly1|487368|fgenesh2_kg.6__502__AT5G05680.1
Length=2675
Score = 4139 bits (2241), Expect = 0.0
Identities = 2526/2663 (95%), Gaps = 22/2663 (1%)
Strand=Plus/Plus
Query 49 TCTGCATCTCCTTCCGACGAAAACAGATACACTCGAGT----GA-AGAAAGTATGA-AAT 102
|||||||| || |||||||| ||||||||||| |||| || ||||||||||| ||
Sbjct 22 TCTGCATCGCCGGCCGACGAACACAGATACACTTGAGTGAAAGAGAGAAAGTATGAGAA- 80
Query 103 TTAACTTTAACGAGACAGAGGATGCACCAGATTCACGACGATCTCCGACGCCCAAAGAGC 162
||||||| | ||| |||||||| | ||||||||||| || || |||||||| |||||||
Sbjct 81 TTAACTTCCAGGAGCCAGAGGATACGCCAGATTCACGGCGGTCCCCGACGCCTAAAGAGC 140
Query 163 CGGTTAGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAG 222
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CGGTTCGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAG 200
Query 223 ATGAACCCGCCGTGTCGCAGCTGTTTCCGAGAAATTTCATGGCTTGGGACGGAGACTCGC 282
|||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 201 ATGAACCCACCCCGTCGCAGCGGTTTCCGAGGAATTTCATGGCTTGGGACGGAGACTCGC 260
Query 283 G-CGTATACTACTGGGATTCGAGACGATATCTCCTTCACCGATTATCTCTGCGCTTGGGT 341
| | |||||||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 261 GAC-TATACTACTGGGATTCTAGACGATATCTTCTACATCGATTATCTCTGCGCTTGGGT 319
Query 342 GAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTT 379
Query 402 CAGGTGACATTTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTT 461
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CAGATGACAATTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTT 439
Query 462 GCCGGCTCAGATGGGATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGATAGAAGAC 521
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 440 GCCGGCTCAGATGGAATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGGTAGAAGAT 499
Query 522 AATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTAGTGACAGTGCC 581
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 500 AATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTGGTGACAGTGCC 559
Query 582 ATAACCTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCC 641
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 ATAAACTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCC 619
Query 642 TCGGATGCAGTTTTCAGGCTTTTCGATTTGTCTTCA-GATACTGAGCTACCAGAGCAAGA 700
|| |||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||
Sbjct 620 TCAGATGCAGTTTTCAGGCTTTTCGATTTATCTT-ACGATGCTGAGCTACCAGAGCAAGA 678
Query 701 ATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGC 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 ATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGC 738
Query 761 TGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTATATTATTCAC 820
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 739 TGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTTTATTATTCAC 798
Query 821 TGATGGTTCAATTTATATCTTATGCCCCGTTGTGCCATTTGGAAGTGTTTACAAATGGGA 880
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 799 TGATGGTTCAATTTATATCCTGTGCCCAGTTGTGCCATTTGGAAGTGTTTACAAATGGGA 858
Query 881 ATCCG-TAATGGAGATTTACAACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCG- 938
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 859 ATC-GATAATGGAGATTTACCACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCGA 917
Query 939 TTAGCAGTTAGCAACTCCAGTCTGGCTATTGAATGGTTGGAAGCTACATTTCCAGATTTG 998
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 918 TT-GCAGTGAGCAACTCCAGTCTGGCAATTGAATGGTTGGAAGCTACATTTCCAGATTTG 976
Query 999 ACTGAGCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCAGCCTTATGCTTTG 1058
||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 977 ACTGAACAAGGAACCAGAGGTGAAAATATATTGGTCGTGAAAGCTCATCCTTATGCTTTG 1036
Query 1059 CTTGACGCATCACTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGAT 1118
|||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1037 CTTGACGCATCATTAGCTTTACAGGGCCCTTTATATAAAGCATCTAATGGTGACGGAGAT 1096
Query 1119 GAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATTATATAAT 1178
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1097 GAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGGCGGGCAGTGAGTCTATTATATAAT 1156
Query 1179 CTTGTTAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGAT 1238
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CTTGTCAGCAAAGATTCGATCCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGAT 1216
Query 1239 GCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATG 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 GCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATG 1276
Query 1299 AACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAAGTGAGCTT 1358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1277 AACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAGGTGAGCTT 1336
Query 1359 CCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCACCACCA 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1337 CCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCGCCGCCA 1396
Query 1419 CTGTTAAGACTTGCAATGGTTGATTTGGCTCTCCCCAAAATGCGTGAAGGTGGCTCTCTT 1478
|||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 1397 CTGTTAAGACTTGCAATGGTTGATTTGGCTCTTCCCACACGGCGTGAAGGTGGCTCTCTT 1456
Query 1479 GTTACCTTGTTTGCTGACTCCCTTTTGCCAGAACGAATATACTCCCTTCACGACGGTGGC 1538
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1457 GTTACCTTGTTTGCTGATTCTCTTTTGCCAGAACGAATATACTCCCTCCACGACGGTGGC 1516
Query 1539 ATTGATTCAACAGTCTTACACTCTCTTCCCTTCACAAGTCAGGCCAGTGGAAAAGATGAA 1598
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1517 ATTGATTCAACAGTCTTACACTCTCTTCCCTTTACAAGTCAGGCCACTGGAAAAGATGAA 1576
Query 1599 GCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTA 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 GCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTA 1636
Query 1659 TCTCCTTTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGGTATTCATGGATCGTTGCA 1718
|||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 1637 TCTCCTCTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGTTATGCATGGATCATTGCA 1696
Query 1719 GTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACTTGGGATCTCTTGCTTCCA 1778
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1697 GTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACCTGGGATCTGTTGCTTCCA 1756
Query 1779 ATTCATGTCAGTACGGATAAGACAGTGTCTTCAAGCGCAATAGAGAAAAAAGAGCAAGAG 1838
|||||||| |||| ||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 1757 ATTCATGTTGGTACAGATAAGACAGTATCTTCAAGTGAAATAGAGAAAAAAGAGCAAGAT 1816
Query 1839 AACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCGCCCCAC 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1817 AACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCTCCCCAT 1876
Query 1899 GCTTTACCTAACCAGCGTTCAACTCCAGCCAATTCCGTAGAAGGCAGATCAATTCTGCTT 1958
|||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1877 GCTTTACCTACCCAGCGTTCAACTCCAGCCAATTCTGTAGAAGGCCGATCAATTCTGCTT 1936
Query 1959 GACTATGTCAAACTTTTCCATGAAAACTACATCGAATATGCACACAAGGTCCACTTTGAG 2018
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1937 GACTATGTCAAGCTTTTCCATGAAAACTACATCGAATATGCCCACAAGGTCTACTTTGAG 1996
Query 2019 CTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCT 2078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 CTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCT 2056
Query 2079 GAGGCAAATGAGAAAATATCAAAAGTTGAGAAAAACCAATCTTTTCTGGAGAAAAGGATT 2138
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2057 GAGGCAAATGAGAAAATATCAAAAGTTGACAAGAACCAATCTTTTCTGGAGAAAAGGATT 2116
Query 2139 GACAAAGCAATTGAAAGACATGATTCTCTTGAACAATGCTTGCAACGTCTCCGTAGCTTG 2198
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 2117 GACAAAGCAATTCAAAGACATGATTCTCTTGAGCAACGCTTGCAACGTCTCCGTAGCTTG 2176
Query 2199 CCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAATCGGAGCTCGAT 2258
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2177 CCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAGTCGGAGCTCGAT 2236
Query 2259 CAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATCGAAACACTGAGAGCAAGA 2318
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2237 CAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATTGAAACACTGAGAGCAAGA 2296
Query 2319 GTGAAGAAGTCAACTCAAAAATCTCACAAGGGCACAGTAGTCGCAGCTAGTCAGAAAAAG 2378
||||| |||||| |||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 2297 GTGAAAAAGTCAGCTCAAAAATCTCCCAAGGGCACAGTCGTCGCAGCTACTCAGAAAAAG 2356
Query 2379 CAGTATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTC 2438
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2357 CAATATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTC 2416
Query 2439 GCCAAACTATCCCTGATGAATAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCG 2498
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2417 GCCAAACTATCCCTGATGAACAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCG 2476
Query 2499 CTGAAATCGCAAGAAAGCAGTTTCATGTAGTCACTCACTGTAACAGGGACGCAGTTATCA 2558
||||| ||||||||||||||||||||||||||||| | | || |||||||| ||||||
Sbjct 2477 CTGAAGTCGCAAGAAAGCAGTTTCATGTAGTCACTG--TATCACTGGGACGCAATTATCA 2534
Query 2559 TTTCCTTGACTGACTAAA--TCCTGTTCAAATTTGAATATATGT-GCTGCACCAAATTTT 2615
|||||| ||||||||| | | ||||||||||||||||||| || ||| ||| |||||||
Sbjct 2535 TTTCCTGGACTGACTAGAGGTTCTGTTCAAATTTGAATATA-GTTGCTACACTAAATTTT 2593
Query 2616 CTAACTCTCTCCTTGTAAGTTTTGTCTGTTAAATCAAACTACGGTATTACTTTAATTTGT 2675
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2594 CTAACTCTCTCCTTGTAAGTTTTGTCTGTTAA-TCAAGCTACGGTATTACTTTAATTTGT 2652
Query 2676 CTCTACAAATGGTCATTTTCTGC 2698
|||| |||| ||||||||||||
Sbjct 2653 CTCTGTAAATTGTCATTTTCTGC 2675
> Ahg939954 jgi|Araly1|939954|scaffold_600498.1
Length=961
Score = 815 bits (441), Expect = 0.0
Identities = 505/536 (94%), Gaps = 3/536 (1%)
Strand=Plus/Plus
Query 129 CCAGATTCACGACGATCTCCGACGCCCAAAGAGCCGGTTAGGTGGGTTCCTCTCCAGAGC 188
||||||||||| |||| ||||| ||| |||||||||||| ||||||||||||||||||||
Sbjct 2 CCAGATTCACGGCGATATCCGATGCCTAAAGAGCCGGTTCGGTGGGTTCCTCTCCAGAGC 61
Query 189 CACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAGATGAACCCGCCGTGTCGCAGCTG-TT 247
||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| | ||
Sbjct 62 CACCCGGTTTTCGCTTCTCTTCCATCCTCCCAGGATGAACTCGCCGCGTCGCAGC-GTTT 120
Query 248 TCCGAGAAATTTCATGGCTTGGGACGGAGACTCGCGCGTATACTACTGGGATTCGAGACG 307
|||||||||||| ||||||||||||||||||| |||| |||||||||||||||| | |||
Sbjct 121 TCCGAGAAATTTGATGGCTTGGGACGGAGACTGGCGCCTATACTACTGGGATTCTAAACG 180
Query 308 ATATCTCCTTCACCGATTATCTCTGCGCTTGGGTGAACCTGAACCATCCTCCGTCCTCGC 367
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 181 ATATCTCCTTCACCGATTATCTCTGCGCTTGGGTGAGCCTGAACCATCATCCGTCCTCGC 240
Query 368 CGCAGTCCCGTCCAAGGTGATGCAACCAGACCTTCAGGTGACATTTTCTGTTAGCAAAAT 427
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CGCAGTCCCGTCCAAGGTGATGCAACCAGACCTTCAACTGACATTTTCTGTTAGCAAAAT 300
Query 428 CTCCATCAATAAGTCTGGATCAGCTGTACTTCTTGCCGGCTCAGATGGGATATGTGTGAT 487
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 CTCCATTAATAAGTCTGGATCAGCTGTACTTCTTGCCGGCTCAGATGGAATATGTGTGAT 360
Query 488 GTACCTATTTGGACGTGCTTCTGTGATAGAAGACAATGTCATTTGCAGGGTAGTTTCTAT 547
||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 361 GTACCTATTTGGACGTGCTTCTGTGGTAGAATACAATATCATTTGCAGGGTAGTTTCTAT 420
Query 548 TGGTTCAGAAATCTATACTAGTAGTGACAGTGCCATAACCTTGCTACAAGCATCGTGGCA 607
|||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||
Sbjct 421 TGGTTCAGAAATCTATACTAGTGGTGACAATGCCATAAACTTGCTACAAGCATTGTGGCA 480
Query 608 CCCTGATAGTGACACCCATTTGGGAATTCTATCCTCGGATGCAGTTTTCAGGCTTT 663
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 481 CCCTGATAGTGACACCCATTTGGAAATTCTATCCTCGGATGCAGTTTTCAG-CTTT 535
Score = 379 bits (205), Expect = 5e-104
Identities = 215/220 (98%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 1004 GCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCAGCCTTATGCTTTGCTTGA 1063
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 655 GCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCATCCTTATGCTTTGCTTGA 714
Query 1064 CGCATCACTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGATGAAGA 1123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CGCATCATTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGATGAAGA 774
Query 1124 TTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATTATATAATCTTGT 1183
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 TTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATCATATAATCTTGT 834
Query 1184 TAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCTGGA 1223
||||||||||||||||||||||||||||||||||| |||
Sbjct 835 CAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCAGGA 874
Score = 100 bits (54), Expect = 4e-20
Identities = 65/70 (93%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 805 TCTTTATATTATTCACTGATGGTTCAATTTATATCTTATGCCCCGTTGTGCCATTTGGAA 864
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 582 TCTTTATATTATTCACTGATGGTTCAATTTATATCCTGTGCCCAGTTGTGCCATTTGGAA 641
Query 865 GTGTTTACAA 874
| |||||||
Sbjct 642 GA-TTTACAA 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101777134640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5