BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05690.1
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939998 jgi|Araly1|939998|scaffold_600542.1 2470 0.0
> Ahg939998 jgi|Araly1|939998|scaffold_600542.1
Length=1463
Score = 2470 bits (1337), Expect = 0.0
Identities = 1413/1450 (97%), Gaps = 3/1450 (0%)
Strand=Plus/Plus
Query 58 tcatcatc-ttcttcttcaatggccttcaccgcttttctcctcctcctctcttccATCGC 116
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 4 TCATCATCAATCTTCTTCAATGGCCTTCACCGCCTTTCTCCTCCTCCTCTCTTCCATCGC 63
Query 117 CGCCGGCTTCCTCCTCCTACTCCGCCGTACACGTTACCGTCGGATGGGTCTGCCTCCGGG 176
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 64 CGCCGGTTTCCTCCTCCTCCTCCGCCGTACACGTTACCGTCGGATGGGTCTTCCTCCGGG 123
Query 177 AAGCCTTGGTC-TCCCTCTGATAGGAGAGACTTTTCAGCTGATCGGAGCTTACAAAACAG 235
|||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AAGCCTCGGTCTTCCC-CTGATAGGAGAGACTTTTCAGCTGATCGGAGCTTACAAAACAG 182
Query 236 AGAACCCTGAGCCTTTCATCGACGAGAGAGTAGCCCGGTACGGTTCGGTTTTCATGACGC 295
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 183 AGAACCCTGAGCCTTTCATCGACGAGAGGGTGGCCCGGTACGGTTCGGTTTTCATGACGC 242
Query 296 ATCTTTTTGGTGAACCGACGATTTTCTCAGCTGACCCGGAAACGAACCGGTTTGTTCTTC 355
|||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 243 ATCTATTTGGTGAACCGACGGTTTTCTCAGCTGACCCGGAGACGAACCGGTTTGTTCTTC 302
Query 356 AGAACGAAGGGAAGCTTTTTGAGTGTTCTTATCCTGCTTCCATTTGTAACCTTTTGGGGA 415
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 303 AGAACGAAGGGAAGCTTTTCGAGTGTTCTTATCCTGCTTCCATTTGTAATCTTTTGGGGA 362
Query 416 AACACTCTCTGCTTCTTATGAAAGGTTCTTTGCATAAACGTATGCACTCTCTCACCATGA 475
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 363 AACACTCTTTGCTTCTTATGAAAGGTTCTTTGCATAAACGTATGCACTCTCTTACCATGA 422
Query 476 GCTTTGCTAATTCTTCAATCATTAAAGACCATCTCATGCTTGATATTGACCGGTTAGTCC 535
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 423 GCTTTGCTAATTCTTCAATCATCAAAGACCATCTCATGCTTGATATTGACCGGTTAGTCC 482
Query 536 GGTTTAATCTTGATTCTTGGTCTTCTCGTGTTCTCCTCATGGAAGAAGCCAAAAAGATAA 595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 483 GGTTTAATCTTGATTCTTGGTCTTCTCGGGTTCTCCTCATGGAAGAAGCCAAAAAGATAA 542
Query 596 CGTTTGAGCTAACGGTGAAGCAGTTGATGAGCTTTGATCCAGGGGAATGGAGTGAGAGTT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CGTTTGAGCTAACGGTGAAGCAGTTGATGAGCTTTGATCCAGGGGAATGGAGTGAGAGTT 602
Query 656 TAAGGAAAGAGTATCTTCTTGTCATCGAAGGcttcttctctcttcctctccctctcttct 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TAAGGAAAGAGTATCTTCTTGTCATCGAAGGCTTCTTCTCTCTTCCTCTCCCTCTCTTCT 662
Query 716 cCACCACTTACCGCAAAGCCATCCAAGCGCGGAGGAAGGTGGCGGAGGCGTTGACGGTGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CCACCACTTACCGCAAAGCCATCCAAGCGCGGAGGAAGGTGGCGGAGGCGTTGACGGTGG 722
Query 776 TGGTGATgaaaaggagggaggaggaggaagaaggagcggagagaaagaaagaTATGCTTG 835
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 723 TGGTGATGAAGAGGAGGGACGAGGAGGAAGAAGGAGCGGAGAGAAAAAAAGATATGCTTG 782
Query 836 CGGCGTTGCTTGCGGCGGATGATGGATTTTCCGATGAAGAGATTGTTGACTTCTTGGTGG 895
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 783 CGGCGTTGCTTGCCGCGGATGATGGATTTTCCGATGAAGAGATTGTTGATTTCTTGGTGG 842
Query 896 CTTTACTTGTCGCCGGTTATGAAACAACCTCCACGATCATGACTCTCGCCGTCAAATTTC 955
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 843 CTTTACTCGTCGCCGGTTATGAAACAACCTCCACAATCATGACTCTCGCCGTTAAATTTC 902
Query 956 TCACCGAGACTCCTTTAGCTCTTGCTCAACTCAAGGAAGAGCATGAAAAGATTAGGGCAA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TCACCGAGACTCCTTTAGCTCTTGCTCAACTCAAGGAAGAGCATGAAAAGATTAGGGCAA 962
Query 1016 TGAAGAGTGATTCGTATAGTCTTGAATGGAGTGATTACAAGTCAATGCCATTCACACAAT 1075
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGAAGAGTGATTCATATAGTCTTGAATGGAGTGATTACAAGTCAATGCCATTCACACAAT 1022
Query 1076 GTGTGGTTAATGAGACGCTACGAGTGGCTAACATCATCGGCGGTGTTTTCAGACGTGCAA 1135
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1023 GTGTGGTTAACGAGACGCTGCGAGTGGCTAACATCATCGGCGGTGTTTTCAGACGGGCAA 1082
Query 1136 TGACGGATGTTGAGATCAAAGGTTATAAAATTCCAAAAGGGTGGAAAGTATTCTCATCGT 1195
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1083 TGACGGATGTTGAGATCAAAGGTTATAAGATTCCAAAAGGGTGGAAAGTATTCTCATCGT 1142
Query 1196 TTAGAGCGGTTCATTTAGACCCAAACCACTTCAAAGATGCTCGCACTTTCAACCCTTGGA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TTAGAGCGGTTCATTTAGACCCAAACCACTTCAAAGATGCTCGCACTTTCAACCCTTGGA 1202
Query 1256 GATGGCAGAGCAACTCGGTAACGACAGGCCCTTCTAATGTGTTCACACCGTTTGGTGGAG 1315
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1203 GATGGCAGAGCAACTCGGTAACAACAAGCCCTTCTAATGTGTTCACACCGTTTGGTGGAG 1262
Query 1316 GGCCAAGGCTATGTCCCGGTTACGAGCTGGCTAGGGTTGCACTCTCTGTTTTCCTTCACC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GGCCAAGGCTATGTCCCGGTTACGAGCTGGCTAGGGTTGCACTCTCTGTTTTCCTTCACC 1322
Query 1376 GCCTAGTGACAGGCTTCAGTTGGGTTCCTGCAGAGCAAGACAAGCTGGTTTTCTTTCCAA 1435
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GCCTAGTGACTGGCTTCAGTTGGGTTCCTGCAGAGCAAGACAAGCTGGTTTTCTTTCCAA 1382
Query 1436 CTACAAGAACGCAGAAACGGTACCCGATCTTCGTGAAGCGCCGTGATTTTGCTACTTGAA 1495
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1383 CTACAAGAACGCAGAAACGGTACCCGATCTTCGTGAAGCGCCGTGATGTTGCTACTTGAA 1442
Query 1496 GAAGAAGAGA 1505
||||||||||
Sbjct 1443 GAAGAAGAGA 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64258243315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5