BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05700.1
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487372 jgi|Araly1|487372|fgenesh2_kg.6__506__AT5G05700.1 2937 0.0
Ahg478464 jgi|Araly1|478464|fgenesh2_kg.3__1165__AT3G11240.1 525 5e-148
> Ahg487372 jgi|Araly1|487372|fgenesh2_kg.6__506__AT5G05700.1
Length=2151
Score = 2937 bits (1590), Expect = 0.0
Identities = 2006/2196 (91%), Gaps = 72/2196 (3%)
Strand=Plus/Plus
Query 89 GATTATGTCTTTGAAAAACGATGCGAGTAGTAGCCACGACGGTGGAAGCAACAGAGAAAG 148
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1 GATTATGTCTTTGAAAAACGATGCGAGTAGTAGCCACGACGGCAGAAGCAACGGAGAAAG 60
Query 149 CGTAATCGATGATCATGGCCGCCGTAAAAGCACTTGCGGCTACTGTAAATCCCCAGCTCG 208
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CGTAATCGATGATCATGGCCGCCGTAGAAGCACTTGCGGCTACTGTAAATCCCCAGCTCG 120
Query 209 GTCCAGTATCTCTCACGGTTTATCAGCACAGACTCTTACCGTTTATGACTACCAAGCTCT 268
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GTCCAGTACCTCTCACGGTTTATCAGCAGAGACTCTTACCGTTTATGACTACCAAGCTCT 180
Query 269 TATTGACCGAGGCTGGAGAAGATCTGGTACTTATCTTTACAAACATGAGATGGATAAAAC 328
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TATTGACCGAGGCTGGAGACGATCTGGTTCTTATCTTTACAAACATGAGATGGATAAAAC 240
Query 329 GTGTTGCCCTCCTTATACGATACGTTTGAAAGCAAGTGATTTTGTTCCTACTAAAGAGCA 388
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGTTGCCCTCCTTATACGATCCGTTTGAAAGCAAGTGATTTTGTTCCTACTAAAGAGCA 300
Query 389 GCAGCGAGTTTCTAGAAGACTAGAAAGGTTCTTGGATGGCAAACTAGATGTGCAGCCCAG 448
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GCAGCGAGTTTCTAGGAGACTAGAAAGGTTCTTGGATGGCAAACTCGATGTGCAGCCCAG 360
Query 449 GGAACAAAGAGGTGCTTCTTCCTCTGGTGATGTTTCAGATACAAGGAGAAAAACACTTGG 508
|||||| | |||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 361 GGAACATACAGGTGCTTCTTCCTCTCGTGAAGTTTCAGATGCAAGGAGAAAAACACTTGG 420
Query 509 AGCTGCTAAAAGTGAAGAGAATAAGAAAGTTGAAGCAGTTATGGATGATTTGTCTAAAAA 568
|||||| ||||||||||| || || ||||||||| || ||||||||||||||||||||||
Sbjct 421 AGCTGCCAAAAGTGAAGAAAAGAATAAAGTTGAACCAATTATGGATGATTTGTCTAAAAA 480
Query 569 TATTGACCAAGCTGTGCAATTATGCATACGGAGTGGGGAATTCCCGTCTAATATGCAGAT 628
||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 481 GATTGACCAAGCTGTGCAATTATGCATACGGAGTGGAGAATTCCCTTCTGATATGCAGAT 540
Query 629 ACCAAAAGCTTCAGTGAAGAAGGTTTTCTGTGCTAGAAGAAAGAAACTAGCTGAAGGAAC 688
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 ACCAAAAGCTTCAGTGAAGAAGGTTTTATGTGCTAGAAGAAAGAAACTAGCTGAAGGAAC 600
Query 689 AGAACAAATCTTATACACCAGCAACATTGCTTTTCCAATAGCAGCTGCAATAAAACGCAT 748
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAACAACTCTTATACACCAGCAACATTGCTTTTCCAATAGCAGCTGCAATAAAACGCAC 660
Query 749 CCAGACATCTGAGAAAGAGGGGATAAATAGTGCAGAAGGAAATAGATTATCACCTGAAAC 808
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 CCAGAAATCTGAGAAAGGGGGGATAAATAGTGCAGAAGGAAACAGATTATCACCTGAAAC 720
Query 809 TATTTCTGAGATGTTGTTGAGTGCAATGCATAAGGTGGGGGAAACTCCTGATGTGTCTAT 868
|||||| ||||||||||||||||| || ||||||||||||||||||| |||| |||||||
Sbjct 721 TATTTCGGAGATGTTGTTGAGTGCGATACATAAGGTGGGGGAAACTCATGATATGTCTAT 780
Query 869 CAAAGTCTGTAAGGGCCATATCAATTTCCTTTCATCTGCCAAAGATTCTTTTTCTGATAG 928
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 781 TAAAGTCTGTAAGGGCCATATCAATTTCCTTTCAGCTGCCAAAGATTCTTTCTCTGATAG 840
Query 929 AGATGTTGTACCTAATGGTAACATCTCGAGAGGAGCCAATTCTTTAGATGGAAGTGAAAC 988
||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 841 AGATGTTGTACCTAATGGTGACATCTCGAGAGGAGCCAATTCAACAGGTGGAAGTGAAAC 900
Query 989 CCTTCACGCTAAGAAGGATTCAGAAAACCATCAGGCAAGAAAGCGAAAGCTGGAGATACA 1048
|||||| ||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 901 CCTTCATGCTAAGACGGATTCAGAAAACCGTCAGGCAATAAAGCGAAAGCTGGAGATACA 960
Query 1049 TTTGAAAAGGTCTAGTTTTGATCCTGAAGAACATGAGTTATACAAACGGTATCAGCTGAA 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 961 TTTGAAAAGGTCTAGTTTTGATCCTGAAGAACATGAGTTATACAAACGGTATCAGCTAAA 1020
Query 1109 AGTGCACAATGATAAGCCAGGGCACGTTGTAGAAAGTTCATACAGAAGGTTTTTGGTCGA 1168
|||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||
Sbjct 1021 AGTGCACAATGATAAGCCAGAGCACGTAGCAGAAAGTTCTTACAGAAGGTTTTTGGTCGA 1080
Query 1169 CTCTCCTTTAATAGATGTTCAACCTTCAGGTGATGAAAAGGTTCCGCCTTGTGGCTTCGG 1228
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTCTCCTTTAATAGACGTTCAACCTTCAGGTGATGAAAAGGTTCCGCCTTGTGGCTTCGG 1140
Query 1229 CTCTTTCCACCAACAATATAGAATTGATGGCCGCCTAATTGCCGTCGGGGTTGTAGACAT 1288
|||||||||||||||||||||| ||||||| | |||| || ||||||||||| |||||
Sbjct 1141 CTCTTTCCACCAACAATATAGAGTTGATGGGCTTTTAATAGCTGTCGGGGTTGTTGACAT 1200
Query 1289 TCTTCCTAAATGTTTGTCAAGTGTATACTTATTCTGGGATCCAGACTATGCATTCTTATC 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCTTCCTAAATGTTTGTCAAGTGTATACTTATTCTGGGATCCAGACTATGCATTCTTATC 1260
Query 1349 GCTCGGAAAATATTCTGCCATTCAAGAAATTAATTGGGTTATAGAGAACCAAGCTCGCTG 1408
|||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||| |||
Sbjct 1261 GCTCGGGAAATATTCTGCCATGCAAGAAATTAATTGGGTCATAGAAAACCAAGCTCACTG 1320
Query 1409 CCCTTCTCTTCAGTATTACTATCTTGGTTATTATATACATTCCTGCAGCAAGATGAGATA 1468
||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||
Sbjct 1321 CCCTTCTCTTCAGTATTACTACCTTGGCTATTATATACATTCCTGCAGGAAGATGAGGTA 1380
Query 1469 TAAAGCAGCCTATCGTCCATCTGAGCTTCTATGTCCTCTCCGTTTCCAGTGGGTTCCATT 1528
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1381 TAAAGCAGCCTATTGTCCATCTGAGCTTCTATGTCCTCTTCGTTTCCAGTGGGTTCCATT 1440
Query 1529 TGAAGTAGCAAGGCCGATGCTTGATAAAAAGCCATATGTCATATTGTCCGATATTGCTAT 1588
|||| |||| ||||| |||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1441 TGAAATAGCGAGGCCTATGCTTGATAAAAAGCCATATGTCATCTTGTCCGATATCGCCAT 1500
Query 1589 TTCACATAATCAATGTTCTTTACTAGCTGGTGCTTCTGAAACTCTCGTGGAACCAGCAGC 1648
|||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1501 TTCACAGAATCAATGTTCTTTACTAGCTGGTGCTTCTGAAACTCTAGCGGAACCAGCAGC 1560
Query 1649 AAGTGAACATGAAGACATGGAACAAGGGGAGACGAATGATAACTTTATGGGCTGCAGtga 1708
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1561 TAGTGAACATGAAGACATGGAACAAGGGGAGACGAATGATAATTTTATGGGCTGCAGTGA 1620
Query 1709 tgaggatgaagatgaggatgaggatgatgatgatgatgatgatgatgatgaGGAAATGTA 1768
||| ||| | || ||||||||||||||| | ||| ||||| ||
Sbjct 1621 TGA---TGA-G--GA---TGAGGATGATGATGA--A--ATG--GATGA-GA--------- 1655
Query 1769 TGAGACTGAATCAGAGGACTCTCATATTGAGTCAGACCCTGGATCCAAAGATAACGACAT 1828
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 -----CTGAATCAGAGGACTCTCATATTGAGTCAGACCCTGGATCCAAAGATAACGACAT 1710
Query 1829 TAACAACATCCTTATCGGTCTTTATGGATCCCAATATAGATACAAGGAAATGCGGCAGAT 1888
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1711 TAACAACATTCTTATCGGTCTATATGGATCCCAATATAGATACAAGGATATGCGGCAGAT 1770
Query 1889 CATAACTCCCGTAGGCAGGAAGCAACTGGAACCGATGTTACAAAGCTACCGCAAGGTTGT 1948
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 CATAACTCCTGTAGGCCGGAAGCAACTGGAACCGATGTTACAAAGCTACCGCAAGGTTGT 1830
Query 1949 -GGGCG-CTGAGCTTTCAGAGAGAATGGTGTATGAAATCAACTGAAGCTTCAACAATA-- 2004
||| | | ||||| |||||||||||||||||||||||||||| |||||| || ||||
Sbjct 1831 CGGG-GAC-GAGCTATCAGAGAGAATGGTGTATGAAATCAACTAAAGCTTTAATAATAAT 1888
Query 2005 -CCAA-GCTCCATTGAGCTTTGGTACCATTAGTCATTAGATAAAACTCAAAATTGTTTGT 2062
|||| ||||||||||| || | |||||||||| || ||||||||||||||||||||||
Sbjct 1889 ACCAAAGCTCCATTGAGGTTAG-TACCATTAGTTATCAGATAAAACTCAAAATTGTTTGA 1947
Query 2063 ATTCATGTTTCAGTTGTTGTATATCTATGACTATGAGACTTGTACATGGTGTCTTTCTTT 2122
|| ||||||||||||||||||||||||||| || |||||||||||| || ||||||
Sbjct 1948 ATCCATGTTTCAGTTGTTGTATATCTATGA----GA--CTTGTACATGGTATCCTTCTTT 2001
Query 2123 AAGTTTGT-AT-TT---T----CTGATTACCTTTATAT--TGAAA---AAATTT-CTGTC 2167
|||||||| || || | |||||||||||||||| | | | |||||| ||| |
Sbjct 2002 AAGTTTGTTATGTTCACTTTTTCTGATTACCTTTATATAATCATATTGAAATTTTCTG-C 2060
Query 2168 C-AAGAAGTTGAAAACTAACTT--ACT-G--TTCATGAAGTAGTTTTTGTCAATCTTTGG 2221
| |||||||||||| | | || | | | || | || | | |||| ||| | |||
Sbjct 2061 CTAAGAAGTTGAAATGTTA-TTGGATTTGGGTTTTT-AA-TGGACTTTGA-AAT-TATGG 2115
Query 2222 TACGTACATATGGTTTTGTTATGCTTTTTAATTTTT 2257
||| |||||||||||||||||||||||||| |||||
Sbjct 2116 TACATACATATGGTTTTGTTATGCTTTTTATTTTTT 2151
> Ahg478464 jgi|Araly1|478464|fgenesh2_kg.3__1165__AT3G11240.1
Length=1897
Score = 525 bits (284), Expect = 5e-148
Identities = 671/854 (79%), Gaps = 42/854 (5%)
Strand=Plus/Plus
Query 101 GAAAAACGATGCGAGTAGTAGCCACGACGGTGGAAG-CAACAGAGAAAGCGTAATCGATG 159
||| ||||| || |||||||| | || ||||| | | | |||| || ||| ||| ||
Sbjct 47 GAAGAACGAGGCAAGTAGTAG-C-CG-TGGTGG-CGTCGGCGGAGAGAGTGTAGTCGCTG 102
Query 160 ATCATGGCCGCCGTAAAAGCACTTGCGGCTACTGTAAATC-CCCAGCTCGGTCCAGTATC 218
|| ||| || |||| ||||||||| ||||||||||| | | | || |||||||||
Sbjct 103 ATTGTGGACGAAATAAATCCACTTGCGGTTACTGTAAATCTTCTA-CCCGCTCCAGTATC 161
Query 219 TCTCACGGTTTATCAG-CACAGACTCTTACCGTTTATGACTACCAAGCTCTTATTGACCG 277
||||||||||||| | || ||| || |||||| ||||||||||||||||| |||||||
Sbjct 162 TCTCACGGTTTAT-GGACAGAGAGACTCACCGTTAATGACTACCAAGCTCTTCTTGACCG 220
Query 278 AGGCTGGAGAAGATCTGG-TACTTATCTTTACAAACATGAGATGGATAAAACGTGTTGCC 336
|| |||||| | ||||| | ||| ||||||||||| ||||||||||||||| |||||||
Sbjct 221 TGGATGGAGACGGTCTGGCTGCTT-TCTTTACAAACCTGAGATGGATAAAACTTGTTGCC 279
Query 337 CTCCTTATACGATACGTTTGAAAGCAAGTGATTTTGTTCCTACTAAAGAGCAGCAGCGAG 396
|| ||||||| || || |||||||||||||||||||||||| |||| || ||||||||||
Sbjct 280 CTTCTTATACAATCCGCTTGAAAGCAAGTGATTTTGTTCCTTCTAAGGAACAGCAGCGAG 339
Query 397 TTTC-TAGAAGACTAGAAAGGTTCTTGGATGGCAAACTAGATGTGCAGCCCAGGGAACA- 454
| | |||||||||||||||||||||||||||| ||||||||| | |||| || || ||
Sbjct 340 -TGCGTAGAAGACTAGAAAGGTTCTTGGATGGCGAACTAGATGCGAAGCCGAGTGAGCAG 398
Query 455 A-AGAGG-T---G-C-TT-CTTCCTCTGGTGATGTTTCAGA-TACAAG-GAGAAAAACAC 504
| ||| | | | || ||| ||| | || ||||||| | | | ||||||| |||
Sbjct 399 ACAGAATATCAAGACATTTCTTTCTCCCGCGAAGTTTCAGTGT-CT-GTGAGAAAATCAC 456
Query 505 TTGGAGCTGCTAAAAGTGAAGAGAATAA-GAAAGTTGAAGCAGTTATGGATGATTTGTCT 563
||||||||||||| || ||| | || || ||| || ||| || | ||| | || |||||
Sbjct 457 TTGGAGCTGCTAAGAGAGAACAAAACAATGAA-GTGGAACCAATCATGAAACATCTGTCT 515
Query 564 AAA-AATATTGACCAA-GCTGTGCAATTATGCATACGGAGTGGGGAATTCCCGTCTAATA 621
|| || ||||| || || || ||| |||||||| ||||| ||||| || |||||||
Sbjct 516 GAACAA-ATTGAT-AATGCGGTACAAAGATGCATACAAAGTGGTGAATTTCCTTCTAATA 573
Query 622 TGCAGATACCAAAAGCTTCAGTGAAGAAGGTTTTCTGTGCTAGAAGAAAGAAACTAGCTG 681
| ||||| || ||||||||||| ||||| ||| ||| ||||| ||| |||||||||||||
Sbjct 574 TCCAGATTCCCAAAGCTTCAGTAAAGAAAGTTCTCTCTGCTAAAAGGAAGAAACTAGCTG 633
Query 682 AAGGAACAGAACAAATCTTATACACCAGCAACATTGCTTTTCCAATAGCAGCTGCAATAA 741
|||| ||||| || |||||||||||||||||||| |||||||||||| |||||| ||||
Sbjct 634 AAGGGCCAGAAGAACTCTTATACACCAGCAACATTTCTTTTCCAATAGTAGCTGCTATAA 693
Query 742 AACGCATCCAGACA--TCTGAGAAAGAGGGGATAAATAGTGCAGAAGGAAATAGATTATC 799
|||||| | ||||| |||||||||| | | ||| || ||||| ||| ||||||||
Sbjct 694 AACGCA-C-AGACACATCTGAGAAAG-GCA-A-AAAC-GT--AGAAGAAAACAGATTATC 745
Query 800 ACCTGAAACTATTTCTGAGATGTTGTTGAGTGCAATGCATAAGGTGGGGGAAACTCCTGA 859
||| || || ||||||||| |||||| | ||||||| ||||||| | || | |||
Sbjct 746 ACCAGAGGCTGTTTCTGAGAAGTTGTTAATTGCAATGAATAAGGTAGAAGAGTTTACTGG 805
Query 860 TGTGTCTATCAAAGTCTGTAAGGGCCATATCAATTTCCTTTCATCTGCCAAAGATTCTTT 919
| | ||| | || |||| |||||||||||||| ||||||||| || || || |||||
Sbjct 806 TTTTTCTGTTAAGGTCTCCAAGGGCCATATCAACTTCCTTTCAGCTACCGGAGTTTCTTC 865
Query 920 TTCTGATAGAGATG 933
|| |||||| |||
Sbjct 866 CTCAGATAGAAATG 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85512600025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5