BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05710.1
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487373 jgi|Araly1|487373|fgenesh2_kg.6__507__AT5G05710.1 797 0.0
Ahg336703 jgi|Araly1|336703|fgenesh1_pg.C_scaffold_1003268 593 4e-169
> Ahg487373 jgi|Araly1|487373|fgenesh2_kg.6__507__AT5G05710.1
Length=542
Score = 797 bits (431), Expect = 0.0
Identities = 497/528 (94%), Gaps = 7/528 (1%)
Strand=Plus/Plus
Query 9 TTTCGATAGCATCGGCAGATTTGGATCAAAACCCTAATTCTCCAGTTCAATCTTCGGAAG 68
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2 TTTCGATAGCATCCGCAGATTTGGATCAAAACCCTAATTCTCCAGTTCAATCGTCGGAA- 60
Query 69 ATGGCAAGCCTGTGGCGAGCAGTAATCGGCGGTCAGAACAACAATTCCGAAGACTACGGA 128
|||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||||||
Sbjct 61 ATGGCAAGCCTGTGGCGAGCTGTACTCGGCGGTCAGAGCAACAATTCCGACGACTACGGA 120
Query 129 GGCGTAGAGTTCTGGTCAAACCCAGAACGAACCGGCTGGCTCACGAAACAAGGAGAGTAC 188
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 GGCGTAGAGTTCTGGTCCAACCCTGAACGAACCGGCTGGCTCACGAAACAGGGAGAGTAC 180
Query 189 ATCAAGACTTGGCGACGCCGATGGTTCGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAA 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCAAGACTTGGCGACGCCGATGGTTCGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAA 240
Query 249 GACTCCGACGTCACGCGTGTGTCACGCCCTCGCGGTGTCGTCCCCGTAGAATCGTGCTTA 308
||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||
Sbjct 241 GACTCCGACGTCACGCGCGTCTCACGCCCTCGCGGTGTCGTCCCCGTCGCGTCGTGCTTA 300
Query 309 ACCGCTAAAGGAGCAGAGGATGTACTCAACAAGCAAAACGCGTTCGAGCTATCGACGAGA 368
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGCCAAAGGAGCAGAGGATGTCCTCAACAAGCAAAACGCGTTCGAGCTATCGACGAGA 360
Query 369 AATGAGACTATGTACTTCATTGCTGATTCGGAGAAGGAGAAAGAAGATTGGATCAATTCC 428
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATGAGACTATGTACTTCATCGCTGATTCGGAGAAGGAGAAAGAAGATTGGATCAATTCC 420
Query 429 ATTGGACGTTCCATCGTGCAAAACTCCAGATCCGTTACCGATTCTGAGATCGTTGATTAC 488
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 421 ATTGGACGGTCCATCGTGCAGAACTCCAGATCTGTTACCGATTCTGAGATCGTCGATTAC 480
Query 489 GATAACAAACACTAAA----G-TTTCTCTGTTTTTGTCTTTTGTCAAA 531
|||||||||||||| | |||||||||||||||||||||| |||
Sbjct 481 GATAACAAACACTAGTTCTTGATTTCTCTGTTTTTGTCTTTTGT-AAA 527
> Ahg336703 jgi|Araly1|336703|fgenesh1_pg.C_scaffold_1003268
Length=492
Score = 593 bits (321), Expect = 4e-169
Identities = 361/381 (95%), Gaps = 0/381 (0%)
Strand=Plus/Plus
Query 95 CGGCGGTCAGAACAACAATTCCGAAGACTACGGAGGCGTAGAGTTCTGGTCAAACCCAGA 154
||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 12 CGGCGGTCAGAGCAACAATTCCGACGACTACGGAGGCGTAGAGTTCTGGTCCAACCCAGA 71
Query 155 ACGAACCGGCTGGCTCACGAAACAAGGAGAGTACATCAAGACTTGGCGACGCCGATGGTT 214
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 72 ACGAACCGGATGGCTCACGAAACAGGGAGAGTACATCAAGACTTGGCGACGCCGCTGGTT 131
Query 215 CGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAAGACTCCGACGTCACGCGTGTGTCACG 274
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 132 CGTGCTCAAACAAGGGAAGCTCTTCTGGTTCAAAGACTCCGACGTCACGCGCGTCTCACG 191
Query 275 CCCTCGCGGTGTCGTCCCCGTAGAATCGTGCTTAACCGCTAAAGGAGCAGAGGATGTACT 334
||||||||||||||||||||| | |||||||||||||| |||||||| |||||||| ||
Sbjct 192 CCCTCGCGGTGTCGTCCCCGTCGCGTCGTGCTTAACCGCCAAAGGAGCGGAGGATGTCCT 251
Query 335 CAACAAGCAAAACGCGTTCGAGCTATCGACGAGAAATGAGACTATGTACTTCATTGCTGA 394
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 252 CAACAAGCAAAACGCGTTCGAGCTATCGACGAGAGATGAGACTATGTACTTCATCGCTGA 311
Query 395 TTCGGAGAAGGAGAAAGAAGATTGGATCAATTCCATTGGACGTTCCATCGTGCAAAACTC 454
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 312 TTCGGAGAAGGAGAAAGAAGATTGGATCAATTCCATTGGACGGTCCATCGTGCAGAACTC 371
Query 455 CAGATCCGTTACCGATTCTGA 475
|||||| ||||||||||||||
Sbjct 372 CAGATCTGTTACCGATTCTGA 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22873750200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5