BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05730.2
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487374 jgi|Araly1|487374|fgenesh2_kg.6__508__AT5G05730.1 1927 0.0
> Ahg487374 jgi|Araly1|487374|fgenesh2_kg.6__508__AT5G05730.1
Length=2034
Score = 1927 bits (1043), Expect = 0.0
Identities = 1128/1168 (97%), Gaps = 9/1168 (1%)
Strand=Plus/Plus
Query 26 TTTAGCCGTCACCTCTGAATCTTCTTCTCCG--A-TCTTCAAACATTCCGGCCGCCACCG 82
||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||
Sbjct 1 TTTAGCCGTCACCTCTGAATCTTCTTCTCCGATATTTTTC-AACATTCCGGCCGCCACCG 59
Query 83 AGTTCTTAGCCGTTACAATGTCTTCCTCTATGAACGTAGCGACGATGCAAGCACTGActt 142
||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 60 AGTTCGTAGCCGTTACAATGTCTTCCTCTATGAATGTAGCGACGATGCAACCTCTGACTT 119
Query 143 tctctcgccggcttctcccttctgttgcttctcg-t-tatctc-tcttcttcttctGTGA 199
|||||||||||||| |||||||||| |||||||| | | |||| ||||||||||||||||
Sbjct 120 TCTCTCGCCGGCTTGTCCCTTCTGTGGCTTCTCGCTATCTCTCTTCTTCTTCTTCTGTGA 179
Query 200 CCGTTACTGGATACTCCGGTAGAAGCTCGGCTTACGCGCCTTCTTTCCGTTCGATTAAAT 259
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CCGTTACTGGATATTCCGGTAGAAGCTCGGCTTACGCGCCTTCTTTCCCTTCGATTAAAT 239
Query 260 GCGTCTCTGTTTCTCCGGAAGCTTCAATAGTAAGTGATACAAAGAAGTTGGCAGATGCTT 319
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 GCGTCTCTGTTTCTCCGGAAGCTTCAATAGTAAGTGACACAAAGAAGTTGGCAGATGCTT 299
Query 320 CTAAGAGTACAAACCTTATACCAATTTACCGCTGTATATTCTCTGATCAGCTTACTCCTG 379
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 CTAAGAGCACAAACCTTATACCAATTTACCGCTGTATATTCTCTGATCAGCTTACTCCGG 359
Query 380 TTCTTGCTTACCGTTGTTTGGTCAAAGAAGATGACCGTGAAGCTCCTAGCTTTCTTTTCG 439
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCTTGCTTACCGTTGTTTGGTTAAAGAAGATGACCGTGAAGCTCCTAGCTTTCTTTTCG 419
Query 440 AGTCCGTTGAGCCTGGTTCTCAGATGTCTAGCGTTGGTCGTTATAGCGTTGTTGGGGCTC 499
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 AGTCCGTTGAGCCAGGTTCTCAGATGTCAAGCGTTGGTCGTTATAGCGTTGTTGGGGCTC 479
Query 500 AGCCTGCGATGGAGATCGTGGCAAAGGAGAATAAAGTTATTGTAATGGATCACAACAATG 559
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 AACCTGCCATGGAGATCGTGGCAAAGGAGAATAAAGTTATTGTAATGGATCACTGTAATG 539
Query 560 AAACCATGACTGAGGAAT-TCGTCGAAGATCCAATGGAGATCCCAAGAAAAATCTCTGAG 618
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 540 AAACCATGACTGAGGAATAT-GTCGAAGATCCAATGGAGATCCCAAGAAAAATCTCCGAG 598
Query 619 AAATGGAACCCTGATCCTCAACTAGTTCAGGACCTTCCAGATGCGTTTTGTGGTGGGTGG 678
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 599 AAATGGAACCCTGATCCTCAACTAGTTCAGGACCTTCCAGATGCCTTTTGTGGTGGGTGG 658
Query 679 GTTGGTTTTTTCTCGTACGACACTGTTCGTTATGTTGAGAAGAGGAAATTGCCATTTTCA 738
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 659 GTTGGTTTTTTCTCGTACGACACGGTTCGTTACGTTGAGAAGAGGAAATTGCCATTTTCA 718
Query 739 AAGGCCCCTGAGGATGATAGGAACTTGCCAGACATGCATCTTGGTCTGTACGACGATGTA 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAGGCCCCTGAGGATGATAGGAACTTGCCAGACATGCATCTTGGTCTGTACGACGATGTA 778
Query 799 GTTGTATTTGATCACGTGGAAAAGAAAGCATATGTCATTCACTGGATTAGACTAGATGGG 858
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTGTATTTGATCACGTGGAAAAGAAAGCATATGTCATTCACTGGATTAGACTAGATGGT 838
Query 859 AGCCTTCCTTACGAAAAGGCATACAGTAATGGAATGCAACATTTGGAGAACTTGGTGGCC 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGCCTTCCTTACGAAAAGGCATACAGTAATGGAATGCAACATTTGGAGAACTTGGTGGCC 898
Query 919 AAGTTACATGATATTGAGCCGCCAAAACTGGCTGCAGGTAACGTGAATCTTCAGACACGA 978
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 899 AAGTTACATGATATTGAGCCGCCAAAACTGTCTGCAGGTAACGTGAATCTTCAGACACGA 958
Query 979 CAATTTGGGCCATCTTTGGATAATTCAAACGTGACATGCGAAGAGTACAAGGAGGCTGTG 1038
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 CAATTTGGGCCGTCTTTGGATAATTCAAATGTGACATGCGAAGAGTACAAGGAGGCTGTG 1018
Query 1039 GTCAAGGCCAAAGAACATATACTTGCAGGAGACATATTTCAGATCGTGCTGAGTCAACGT 1098
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1019 GTCAAGGCCAAAGAACATATACTTGCAGGAGACATATTCCAGATCGTGCTGAGCCAACGT 1078
Query 1099 TTTGAGCGGCGAACATTTGCAGACCCCTTTGAAGTTTATAGAGCACTAAGAGTTGTGAAT 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTTGAGCGGCGAACATTTGCAGACCCCTTTGAAGTTTATAGAGCACTAAGAGTTGTGAAT 1138
Query 1159 CCAAGTCCGTATATGGGTTATTTGCAGG 1186
||||||||||||||||||||||||||||
Sbjct 1139 CCAAGTCCGTATATGGGTTATTTGCAGG 1166
Score = 1413 bits (765), Expect = 0.0
Identities = 842/879 (96%), Gaps = 6/879 (1%)
Strand=Plus/Plus
Query 1264 GTTA-TT-CAGGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAG 1321
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1155 GTTATTTGCAGGCTAGAGGATGTATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAG 1214
Query 1322 TAAAGCAGAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATG 1381
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 TAAAGCAGAATAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATG 1274
Query 1382 AAGTTGAGGATAAGAGATTAGAAAAGGAACTGCTAGAGAATGAAAAGCAATGTGCTGAGC 1441
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 1275 AAGTTGAGGATAAGAGATTAGAGAAGGAGCTGCTGGAGAATGAAAAGCAATGTGCTGAGC 1334
Query 1442 ACATCATGTTGGTTGATCTCGGTCGCAACGATGTTGGAAAGGTTACGAAATACGGATCAG 1501
||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||
Sbjct 1335 ACATCATGTTGGTTGATCTCGGTCGTAACGATGTTGGAAAGGTTGCGAAATACGGTTCAG 1394
Query 1502 TGAAAGTAGAGAAGCTTATGAACATCGAACGTTATTCCCATGTTATGCATATAAGCTCCA 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1395 TGAAAGTAGAGAAGCTTATGAACATCGAACGTTATTCCCATGTTATGCATATAAGTTCAA 1454
Query 1562 CGGTGACAGGAGAATTACAAGATGGTTTGACTTGCTGGGACGTACTACGTGCGGCTTTAC 1621
||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1455 CGGTGACAGGAGAGTTACAAGATGATTTGACTTGCTGGGACACACTACGTGCGGCTTTAC 1514
Query 1622 CAGTGGGAACAGTTAGTGGTGCACCAAAGGTCAAAGCTATGGAACTAATCGATGAGCTAG 1681
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1515 CAGTGGGAACAGTTAGTGGTGCACCAAAGGTCAAAGCCATGGAACTAATCGATGAGCTAG 1574
Query 1682 AGCCAACGAGGCGTGGACCATACAGTGGCGGTTTTGGTGGAGTCTCCTTCACTGGTGACA 1741
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1575 AGCCAACAAGACGTGGACCATACAGTGGTGGTTTTGGTGGAGTCTCCTTCACTGGTGACA 1634
Query 1742 TGGACATTGCTTTATCCCTTAGGACAATCGTTTTTCCGACAGCATGTCAATACAATACAA 1801
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1635 TGGACATTGCCTTATCCCTTAGGACAATCGTTTTCCCGACAGCATGTCAATACAATACAA 1694
Query 1802 TGTACTCTTACAAGGATGCTAACAAACGGCGTGAGTGGGTGGCTTATCTTCAAGCTGGAG 1861
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 TGTATTCTTACAAGGATGCTAACAAACGGCGTGAGTGGGTGGCTTATCTTCAAGCTGGAG 1754
Query 1862 CTGGTGTAGTAGCTGATAGTGACCCGCAAGACGAACACTGTGAGTGCCAGAACAAAGCCG 1921
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1755 CTGGTGTAGTAGCTGATAGTGACCCGCAAGATGAACACTGTGAGTGCCAGAACAAAGCCG 1814
Query 1922 CTGGTCTTGCTCGAGCCATCGACTTGGCTGAATCTGCATTTGTGAAAAAATGATTGTGCC 1981
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1815 CTGGTCTTGCTCGAGCCATCGACTTGGCTGAATCTGCATTTGTTAAAAAATGAATGTGCC 1874
Query 1982 CAAGAACAGAGGCTGGCTTTCTTTG-AACTCCGAGTTCATGTGTATAAAACAGTTACAAG 2040
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1875 CAAGAACAGAGA--GGCTTTCTTTGTAACTCCGAGTTCATGTGTATAAAACAGTTGCTAG 1932
Query 2041 CAGAACAAAGttttttctttttCTTGATTTTGTGAGAATTGCAATTAGACTCCATTAATG 2100
|||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1933 CAGAACAAAGGATTCTCTTTTTCTTGATATTGTGAGAATTGCAATTAGACTCCATTAATG 1992
Query 2101 AAGCTCTGAAAAATGTTACAATAGAAACCATGGTCAATA 2139
|||||||||||| ||||||||||||||||||||||||||
Sbjct 1993 AAGCTCTGAAAA-TGTTACAATAGAAACCATGGTCAATA 2030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80484687685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5