BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05760.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487377 jgi|Araly1|487377|fgenesh2_kg.6__511__AT5G05760.1 1712 0.0
> Ahg487377 jgi|Araly1|487377|fgenesh2_kg.6__511__AT5G05760.1
Length=1077
Score = 1712 bits (927), Expect = 0.0
Identities = 1029/1079 (95%), Gaps = 4/1079 (0%)
Strand=Plus/Plus
Query 82 AATTTGCCGGTGACTTTAG-TTCAATTCCGACCCTCCGATGGGCTCGACGTTCAGAGATC 140
||||||||||||| ||| | | ||| || |||||| ||||||||||||||||||| ||||
Sbjct 1 AATTTGCCGGTGA-TTTTGATCCAAGTCTGACCCTACGATGGGCTCGACGTTCAGGGATC 59
Query 141 GGACGGTGGAGCTTCATTCACTGTCCCAAACATTGAAGAAGATCGGGGCAATCCCGTCCG 200
||||||||||| |||||||| |||||||||| |||| ||||||||| || ||||||||||
Sbjct 60 GGACGGTGGAGTTTCATTCATTGTCCCAAACGTTGAGGAAGATCGGAGCGATCCCGTCCG 119
Query 201 TTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCA 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCA 179
Query 261 ATAAGAAGGCTTCCCGGATCGGGTTAGGTATTAAAGAAACGTCACAGAAGATCACGAGGC 320
|||||||||||||||||||||||||||| || | |||||||| ||||||||| ||||||
Sbjct 180 ATAAGAAGGCTTCCCGGATCGGGTTAGGAATCCACGAAACGTCTCAGAAGATCGCGAGGC 239
Query 321 TCGCTAAATTGGCAAAACAATCGACGATTTTCAATGACCGGACTGTGGAAATACAGGAGT 380
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 TCGCTAAATTGGCAAAACAATCGTCGATTTTCAATGACCGGACTGTGGAAATACAGGAGT 299
Query 381 TAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAA 359
Query 441 CCCTTCAGAACATGGAGCTTGCTGATGGGAACTATTCACAGGACCAAGTTGGTCATTACA 500
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 360 CCCTTCAGAACATGGAGATTGCTGATGGGAACTATTCACAGGACAAAGTTGGTCACTACA 419
Query 501 CTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACTAAGCAGCTTCAAGATG 560
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 420 CTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACAAAGCAACTTCAAGATG 479
Query 561 TTCTAACTACGAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCA 620
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCTAACTACAAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCA 539
Query 621 CAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATGCAAAATCTGTACCTGAGCCTCCTC 680
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 CAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATACAAAATCTGTACCTGAGCCTCCTC 599
Query 681 CTTGGTCAAGTTCATCAAATCCTTTCGGGAATTTACAACAACCACTATTACCTCCATTAA 740
|||||||||||||||||||||||| || ||||||||||||||||||||| || ||||||
Sbjct 600 CTTGGTCAAGTTCATCAAATCCTTCCGAGAATTTACAACAACCACTATTGCCGCCATTAC 659
Query 741 ATACTGGAGCTCCGCCAGGTAGCCAGCTCAGACGCAGATCCGCGATCGAGAATGCTCCTT 800
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 ATACTGGAGCTCCTCCAGGTAGCCAGCTCAGACGCAGATCTGCGATCGAGAATGCTCCTT 719
Query 801 CACAGCAAATGGAGATGTCCTTGTTGCAGCAAACAGTCCCAAAGCAGGAGAACTATAGCC 860
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct 720 CACAGCAAATGGAGATGTCCATGTTGCAGCAAACAGTCCCAAGGCAGGAGAACTACAGCC 779
Query 861 AAAGTCGAGCGGTTGCACTTCACAGTGTTGAATCAAGAATAACAGAGCTCAGTGGAATAT 920
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 AAAGCCGAGCGGTTGCACTTCACAGTGTTGAATCAACAATAACAGAGCTCAGTGGAATAT 839
Query 921 TCCCGCAGCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATCGATGACA 980
|| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 840 TCACGCATCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATTGATGACA 899
Query 981 ATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGTAGCGCTCTTCTGCAGCATCTCA 1040
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 ATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGCAGCGCTCTTCTGCAGCATCTCA 959
Query 1041 CTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCC 1019
Query 1101 TGATTGT-TTTCCTCTTCTTTGTGGCTTAAAACAATACCATTTTATCTCTTGTTCCTGG 1158
| ||||| |||| ||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 1020 TCATTGTCTTTC-TCTTCTTTGTGGCTTGAAACAATGCCATTTAATCTCTTGTTCCTGG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5