BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G05770.1

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg349845 jgi|Araly1|349845|fgenesh1_pg.C_scaffold_6000438           475    8e-134


> Ahg349845 jgi|Araly1|349845|fgenesh1_pg.C_scaffold_6000438
Length=582

 Score =  475 bits (257),  Expect = 8e-134
 Identities = 322/353 (91%), Gaps = 6/353 (2%)
 Strand=Plus/Plus

Query  1    ATGTCGTCGAGAGGATTCAACATTAAAGCTAGAGGATTATGTAATAACAACAACGGAGGA  60
            |||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||
Sbjct  1    ATGTCGTCGAGAGGATCCACCATTAAAGGTAGAGGATTATGTAATAACAATAACGGAGGA  60

Query  61   GGAGGAACGG--GGG-CGAAGTGTGGACGGTGGAATCCAACGGTGGAGCAAGTGAAGCTT  117
             | || ||||  ||| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   -G-GG-ACGGCCGGGACAAAGTGTGGACGGTGGAATCCGACGGTGGAGCAAGTGAAGCTT  117

Query  118  CTGACAGATCTGTTCAAGGCGGGACTGCGAACACCGAGCACGGACCAGATTCAGAAGATC  177
            ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct  118  CTGACGGATCTGTTCAAGGCGGGGCTACGAACACCGAGCACGGATCAGATTCAGAAGATC  177

Query  178  TCTATGGAGCTGAGTTTCTACGGTAAGATTGAGAGCAAGAACGTGTTCTATTGGTTCCAA  237
            |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  TCTACGGAGCTAAGTTTCTACGGTAAGATTGAGAGCAAGAACGTGTTCTATTGGTTCCAA  237

Query  238  AACCATAAAGCTAGAGAGAGACAAAAGTGCCGGAAAATCTCCACCGTCAAGTTTGATCAT  297
            ||||||||||||||||||||||||||| |||| | ||||||||||||  | ||||| |||
Sbjct  238  AACCATAAAGCTAGAGAGAGACAAAAGCGCCGCAGAATCTCCACCGTGGATTTTGACCAT  297

Query  298  CGTCAAGATACAGATCTTTCTAAGCCTCGCCGAGACAACGTACGTCGTCATCA  350
            |||||||| ||||||||||||| ||||  |||||||||| ||||||||| |||
Sbjct  298  CGTCAAGACACAGATCTTTCTAGGCCTTACCGAGACAACCTACGTCGTCGTCA  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13163678205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5