BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05780.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940006 jgi|Araly1|940006|scaffold_600550.1 1618 0.0
Ahg478467 jgi|Araly1|478467|fgenesh2_kg.3__1168__AT3G11270.1 1134 0.0
> Ahg940006 jgi|Araly1|940006|scaffold_600550.1
Length=968
Score = 1618 bits (876), Expect = 0.0
Identities = 933/961 (97%), Gaps = 1/961 (0%)
Strand=Plus/Plus
Query 120 GATTCTTCAAACAATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAGAA 179
|||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 9 GATTCTCCGAAC-ATGGATGTGATTAAGACGCAACAGATATCAGCAAGGACGATCGAGAA 67
Query 180 AGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AGTGGTTGTTCATCCACTCGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAA 127
Query 240 GGATTCAAGCAAGCGTGTCGTCGGTGTTCTTCTGGGGAGCAGCTCTCGTGGTGTTGTTGA 299
||||||| ||||||||||||||||||||||||| ||||||||||| |||||| | |||||
Sbjct 128 GGATTCACGCAAGCGTGTCGTCGGTGTTCTTCTCGGGAGCAGCTCCCGTGGTATCGTTGA 187
Query 300 TGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTT 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TGTCACCAACAGCTACGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTT 247
Query 360 TCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGA 307
Query 420 GCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCA 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GCACGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCA 367
Query 480 CGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAA 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CGCCTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAA 427
Query 540 AGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATGCTAC 599
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 428 AGAACTTGGAATCCCTACAAAAGCATACTATGCAGTGGAGGAGGTCAAGGAGAATGCTAC 487
Query 600 TCAGAAAAGCCAGAAAGTTTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAAGTTGA 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 488 TCAGAAAAGCCAGAAAGTTTTCGTTCATGTATCTACAGAAATTGCTGCTCATGAAGTCGA 547
Query 660 GGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGC 719
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 548 GGAAATCGGCGTGGAACATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACTCTGGC 607
Query 720 GACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGAT 667
Query 780 CCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATA 839
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CCGGAGTTACCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATA 727
Query 840 CCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 CCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGC 787
Query 900 CTTCTCCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATTCGGAG 959
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 788 CTTTTCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTATCATCCCTCATTCGGAG 847
Query 960 TGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATGAAAAAGC 1019
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 848 TGTAATTGCACTCCACAACTTGATCAACAATAAGTTGCTGAACAAGGAACATGAAAAAGC 907
Query 1020 AGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGACTT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 908 AGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGGCTT 967
Query 1080 A 1080
|
Sbjct 968 A 968
> Ahg478467 jgi|Araly1|478467|fgenesh2_kg.3__1168__AT3G11270.1
Length=1105
Score = 1134 bits (614), Expect = 0.0
Identities = 831/937 (89%), Gaps = 10/937 (1%)
Strand=Plus/Plus
Query 118 TTGATTCTTCAAACAATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAG 177
||||||| | |||||||||||| || ||||||||||| || || ||||||||||| |||
Sbjct 61 TTGATTCACCGAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGGACGATAGAG 120
Query 178 AAAGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCT 237
|||||| | ||||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 121 AAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAATCGTGTAGCC 180
Query 238 AAGGATTCAAGCAAGCGTGTCGTCGGTGTTCTT-CTGGGGAGCAGCT-CTCGTGGTGTTG 295
|||||| || ||||||| |||||||| ||| || || || | ||||| | |||||| ||
Sbjct 181 AAGGATACACGCAAGCGCGTCGTCGGCGTT-TTGCTCGGAAACAGCTGC-CGTGGTACTG 238
Query 296 TTGATGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCT 355
| || |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 239 TCGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACACAAGCATCT 298
Query 356 GGTTTCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCA 415
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
Sbjct 299 GGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGCTA 358
Query 416 AGGAGCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATG 475
|||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 359 AGGAGCATATTGTGGGTTGGTACAGAACAGGTCCTAAACTTCGAGAGAATGATTTGGATG 418
Query 476 TTCACGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGC 535
||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 419 TTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAAC 478
Query 536 CTAAAGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATG 595
|||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct 479 CTAAAGAACTTGGAATCCCTACAAAAGCATACTATGCTGTTGAGGAGGTGAAGGAGAATG 538
Query 596 CTACTCAGAAAAGCCAGAAAGT-TTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAA 654
|||| |||||||||||| | || ||| || || ||| ||||||||||||| ||||| |||
Sbjct 539 CTACCCAGAAAAGCCAGCAGGTGTTT-GTACACGTGCCTACAGAAATTGCGGCTCACGAA 597
Query 655 GTTGAGGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACC 714
|| |||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 598 GTCGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACC 657
Query 715 CTCGCGACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGG 774
| || ||||||||||| || |||||||||||| ||||||| ||||||||||| ||||||
Sbjct 658 TTGGCAACTGAGGTCACGGCGAAACTTACTGCTCTGAAGGGATTGGATGCACGACTTCGG 717
Query 775 GAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCC-TCTAAACCATGAGAT 833
|||||| ||||||| ||||||||||||||||||||||| ||||| | |||||||||| ||
Sbjct 718 GAGATCAGGAGTTACCTTGACCTTGTAATCGAAGGAAAACTCCCAT-TAAACCATGAAAT 776
Query 834 TTTATACCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGT 893
|| |||||||| |||||||| |||||||||||||||||| |||| || ||||| |||||
Sbjct 777 CTTGTACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAATTGGT 836
Query 894 CAAGGCCTTCT-CCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCA 952
|||||||| | | |||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct 837 TAAGGCCTT-TGCAGTGAAAACAAATGACATGATGCTCGTAATCTACCTATCGTCGCTTA 895
Query 953 TTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATG 1012
| || |||||||| || |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 896 TCCGAAGTGTAATCGCCCTCCACAATTTGATCAACAACAAGTTATTGAACAAGGAACATG 955
Query 1013 AAAAAGCAGAGGACTCAAAGCCTGTGGCCATACCTGC 1049
||||||||||||||||||||||||| |||||||||||
Sbjct 956 AAAAAGCAGAGGACTCAAAGCCTGTTGCCATACCTGC 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5