BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05780.1 Length=1375 Score E Sequences producing significant alignments: (Bits) Value Ahg940006 jgi|Araly1|940006|scaffold_600550.1 1618 0.0 Ahg478467 jgi|Araly1|478467|fgenesh2_kg.3__1168__AT3G11270.1 1134 0.0 > Ahg940006 jgi|Araly1|940006|scaffold_600550.1 Length=968 Score = 1618 bits (876), Expect = 0.0 Identities = 933/961 (97%), Gaps = 1/961 (0%) Strand=Plus/Plus Query 120 GATTCTTCAAACAATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAGAA 179 |||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 9 GATTCTCCGAAC-ATGGATGTGATTAAGACGCAACAGATATCAGCAAGGACGATCGAGAA 67 Query 180 AGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAA 239 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 68 AGTGGTTGTTCATCCACTCGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAA 127 Query 240 GGATTCAAGCAAGCGTGTCGTCGGTGTTCTTCTGGGGAGCAGCTCTCGTGGTGTTGTTGA 299 ||||||| ||||||||||||||||||||||||| ||||||||||| |||||| | ||||| Sbjct 128 GGATTCACGCAAGCGTGTCGTCGGTGTTCTTCTCGGGAGCAGCTCCCGTGGTATCGTTGA 187 Query 300 TGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTT 359 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 TGTCACCAACAGCTACGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTT 247 Query 360 TCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGA 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 248 TCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGA 307 Query 420 GCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCA 479 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308 GCACGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCA 367 Query 480 CGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAA 539 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 CGCCTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAA 427 Query 540 AGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATGCTAC 599 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 428 AGAACTTGGAATCCCTACAAAAGCATACTATGCAGTGGAGGAGGTCAAGGAGAATGCTAC 487 Query 600 TCAGAAAAGCCAGAAAGTTTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAAGTTGA 659 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 488 TCAGAAAAGCCAGAAAGTTTTCGTTCATGTATCTACAGAAATTGCTGCTCATGAAGTCGA 547 Query 660 GGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGC 719 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || Sbjct 548 GGAAATCGGCGTGGAACATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACTCTGGC 607 Query 720 GACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGAT 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 GACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGAT 667 Query 780 CCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATA 839 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 668 CCGGAGTTACCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATA 727 Query 840 CCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGC 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 728 CCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGC 787 Query 900 CTTCTCCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATTCGGAG 959 ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 788 CTTTTCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTATCATCCCTCATTCGGAG 847 Query 960 TGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATGAAAAAGC 1019 ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 848 TGTAATTGCACTCCACAACTTGATCAACAATAAGTTGCTGAACAAGGAACATGAAAAAGC 907 Query 1020 AGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGACTT 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 908 AGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGGCTT 967 Query 1080 A 1080 | Sbjct 968 A 968 > Ahg478467 jgi|Araly1|478467|fgenesh2_kg.3__1168__AT3G11270.1 Length=1105 Score = 1134 bits (614), Expect = 0.0 Identities = 831/937 (89%), Gaps = 10/937 (1%) Strand=Plus/Plus Query 118 TTGATTCTTCAAACAATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAG 177 ||||||| | |||||||||||| || ||||||||||| || || ||||||||||| ||| Sbjct 61 TTGATTCACCGAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGGACGATAGAG 120 Query 178 AAAGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCT 237 |||||| | ||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct 121 AAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAATCGTGTAGCC 180 Query 238 AAGGATTCAAGCAAGCGTGTCGTCGGTGTTCTT-CTGGGGAGCAGCT-CTCGTGGTGTTG 295 |||||| || ||||||| |||||||| ||| || || || | ||||| | |||||| || Sbjct 181 AAGGATACACGCAAGCGCGTCGTCGGCGTT-TTGCTCGGAAACAGCTGC-CGTGGTACTG 238 Query 296 TTGATGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCT 355 | || |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| Sbjct 239 TCGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACACAAGCATCT 298 Query 356 GGTTTCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCA 415 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | Sbjct 299 GGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGCTA 358 Query 416 AGGAGCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATG 475 |||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 359 AGGAGCATATTGTGGGTTGGTACAGAACAGGTCCTAAACTTCGAGAGAATGATTTGGATG 418 Query 476 TTCACGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGC 535 ||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||| | Sbjct 419 TTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAAC 478 Query 536 CTAAAGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATG 595 |||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||| Sbjct 479 CTAAAGAACTTGGAATCCCTACAAAAGCATACTATGCTGTTGAGGAGGTGAAGGAGAATG 538 Query 596 CTACTCAGAAAAGCCAGAAAGT-TTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAA 654 |||| |||||||||||| | || ||| || || ||| ||||||||||||| ||||| ||| Sbjct 539 CTACCCAGAAAAGCCAGCAGGTGTTT-GTACACGTGCCTACAGAAATTGCGGCTCACGAA 597 Query 655 GTTGAGGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACC 714 || |||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||| Sbjct 598 GTCGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACC 657 Query 715 CTCGCGACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGG 774 | || ||||||||||| || |||||||||||| ||||||| ||||||||||| |||||| Sbjct 658 TTGGCAACTGAGGTCACGGCGAAACTTACTGCTCTGAAGGGATTGGATGCACGACTTCGG 717 Query 775 GAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCC-TCTAAACCATGAGAT 833 |||||| ||||||| ||||||||||||||||||||||| ||||| | |||||||||| || Sbjct 718 GAGATCAGGAGTTACCTTGACCTTGTAATCGAAGGAAAACTCCCAT-TAAACCATGAAAT 776 Query 834 TTTATACCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGT 893 || |||||||| |||||||| |||||||||||||||||| |||| || ||||| ||||| Sbjct 777 CTTGTACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAATTGGT 836 Query 894 CAAGGCCTTCT-CCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCA 952 |||||||| | | |||||||||||||||||||||||||| ||||| ||||| || || | Sbjct 837 TAAGGCCTT-TGCAGTGAAAACAAATGACATGATGCTCGTAATCTACCTATCGTCGCTTA 895 Query 953 TTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATG 1012 | || |||||||| || |||||||| |||||||||||||||||| ||||||||||||||| Sbjct 896 TCCGAAGTGTAATCGCCCTCCACAATTTGATCAACAACAAGTTATTGAACAAGGAACATG 955 Query 1013 AAAAAGCAGAGGACTCAAAGCCTGTGGCCATACCTGC 1049 ||||||||||||||||||||||||| ||||||||||| Sbjct 956 AAAAAGCAGAGGACTCAAAGCCTGTTGCCATACCTGC 992 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51465937950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5