BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05790.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940007 jgi|Araly1|940007|scaffold_600551.1 1325 0.0
> Ahg940007 jgi|Araly1|940007|scaffold_600551.1
Length=860
Score = 1325 bits (717), Expect = 0.0
Identities = 813/860 (95%), Gaps = 3/860 (0%)
Strand=Plus/Plus
Query 340 TCTCGTAGCCTTTAAACGATGGAGACTCTGCATCCACTACTCTCGCACGTGCCAACTTCT 399
|||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 3 TCTCGTAGCCTTTACCCGATGGAAACTCTGCATCCACTACTCTCACACGTGCCAACCTCT 62
Query 400 GACCACCGGTTTGTAGTTCAAGAGATGATGTGCTTGCAAAGCTCGAGCTGGACTAAAGAA 459
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GACCACCGTTTTGTAGTTCAAGAGATGATGTGCTTGCAAAGCTCGAGCTGGACTAAAGAA 122
Query 460 GAGAACAAGAAGTTTGAGCGAGCTCTTGCTGTCTACGCTGATGACACGCCTGATCGCTGG 519
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 123 GAGAACAAGAAGTTTGAGCGAGCTCTCGCTGTCTACGCTGATGACACGCCTGACCGCTGG 182
Query 520 TTCAAAGTTGCTGCTATGATCCCTGGAAAGACCATATCAGATGTCATGAGGCAATACTCT 579
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 TTCAAAGTTGCTGCTATGATCCCTGGAAAAACCATATCAGATGTCATGAGGCAATACTCT 242
Query 580 AAGCTTGAAGAAGACCTCTTCGATATCGAAGCAGGACTTGTCCCGATCCCGGGTTACCGT 639
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 243 AAACTCGAAGAAGACCTCTTCGATATCGAAGCAGGACTTGTCCCGATCCCGGGTTACCAT 302
Query 640 TCAGTTACTCCTTGTGGATTTGATCAGGTTGTGAGTCCACGTGACTTTGATGCGTATCGT 699
|||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TCAGCTACTCCCTGTGGATTTGATCAGGTTGTGAGTCCGCGTGACTTTGATGCGTATCGC 362
Query 700 AAACTTCCTAATGGAGCCAGAGGATTTGATCAAGACCGTAGGAAAGGAGTTCCATGGACG 759
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 363 AAACTACCTAATGGAGCCAGAGGATTTGATCAAGACCGTAGAAAAGGAGTCCCATGGACA 422
Query 760 GAGGAAGAACACAGGAGATTCTTGTTAGGGCTTCTCAAGTATGGGAAAGGAGATTGGAGA 819
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 423 GAGGAAGAACACAGGAGATTCTTGTTAGGGCTTCTCAAGTACGGGAAAGGAGATTGGAGA 482
Query 820 AACATATCGAGGAACTTTGTGGGATCAAAAACACCAACTCAGGTTGCAAGTCATGCCCAA 879
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 483 AACATATCGAGGAACTTTGTGGGATCAAAAACACCAACTCAGGTAGCAAGCCATGCCCAA 542
Query 880 AAGTACTACCAAAGACAGCTTTCCGGTGCGAAAGACAAACGACGGCCTAGCATTCACGAC 939
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 543 AAGTACTACCAGAGACAGCTTTCCGGTGCGAAAGACAAACGCCGGCCTAGCATTCACGAC 602
Query 940 ATCACCACCGTCAATCTTCTCAATGCCAATCTTAGCCGTCCATCGTCTGATCACGGTTGC 999
||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||
Sbjct 603 ATCACCACCGTCAATCTTCTCAACGCAAATCTTAGCCGTCCATCTTCTGATAACGGTTGC 662
Query 1000 TTAGTCTCAAAACAGGCCGAGCCGAAACTAGGGTTCACCGACAGGGATAATGCAGAGGAG 1059
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 663 TTAGTCTCACATCAGGCCGAGCCAAAACTAGGGTTCACCGACAGGGATAATGCAGAGGAG 722
Query 1060 GGAGTTATGTTTCTTGGTCAGAATCTATCCTCGGTCTTCTCTTCCTACGATCCTGCCATT 1119
||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 723 GGAGTGAAGTTTCTTGGTCAAAATCTTTCCTCGGTCTTCTCTTCCTACGATCCTGCCGTT 782
Query 1120 AAGTTTTCCGGAGCAAATGTTTACGGTGAAGGAGGTTACTGTATCTCACAAGATCTTGAA 1179
||||| | ||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 783 AAGTTCGCAGGAGCAAATCTTTACGGTGAAGGAGGTTACTGTATC--ACAAGATCCTGAA 840
Query 1180 ACGAGAAAATGA-GAATTTT 1198
| ||||||||| |||||||
Sbjct 841 AAGAGAAAATGTTGAATTTT 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5