BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05810.1
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940009 jgi|Araly1|940009|scaffold_600553.1 1744 0.0
> Ahg940009 jgi|Araly1|940009|scaffold_600553.1
Length=1099
Score = 1744 bits (944), Expect = 0.0
Identities = 1052/1104 (95%), Gaps = 8/1104 (1%)
Strand=Plus/Plus
Query 89 ATAACTTCACTTCCTCTCTCATGCCCGGAATCGCAGTCGTTATCGCCGTCCTCACTGCGT 148
||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 1 ATACCTTCACTTCCTCTTTCATGCCGGGAATCGCCGTCGTTATCGCCGTACTCACCGCGT 60
Query 149 TTTTCTCTCTCACTTTCTTACTTCTCCTCTACGTCAAACACTGTAAACGACGAAACGGCA 208
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TTTTCTCTATCACTTTCTTACTTCTCCTCTACGTCAAACACTGTAAACGACGAAGCGGCT 120
Query 209 GCGTTTACGTAAACCACCCGCAGCGTTTCGCAATCACTAGATACGGAGGAGGATATTACA 268
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CCGTTTACGTAAACCACCCGCAGCGTTTCGCAATCTCTAGATACGGAGGAGGATATTACA 180
Query 269 ACGGTGGAGGAGTAGTAGGAGGAAGGAAAAACTCCGGTATAGACCGGTCCGTGATTGAAT 328
||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 181 ACGGTGGAGGAGTAGGAGGAGGAAGAAAAAATTCCGGTATAGACCGGTCCGTGATTGAAT 240
Query 329 CTTTACCGGTTTTCCGGTTTGGTGCATTAAGCGGTCACAAGGATGGTTTAGAGTGCGCCG 388
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 241 CTTTACCGGTTTTCCGGTTTGGTGCATTGAGCGGCCACAAGGATGGTTTAGAGTGCGCCG 300
Query 389 TGTGTCTCGCTCGGTTCGAACCGACGGAAGTTCTGAGGTTATTGCCGAAATGTAAACACG 448
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTGTCTCGCTCGGTTCGAACCGGCGGAAGTTCTGAGGTTATTGCCGAAATGTAAACACG 360
Query 449 CCTTCCACGTGGAATGTGTTGACACGTGGCTTGACGCTCACTCCACTTGCCCGCTTTGCC 508
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 CCTTCCACGTGGAATGTGTTGACACGTGGCTCGACGCTCACTCCACTTGCCCGCTTTGCC 420
Query 509 GTTACCGGGTCGACCCGGAAGATATACTCTTGATCGGTGATTGTAACTCCTGGTTCGAGC 568
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTACCGGGTTGACCCGGAAGATATACTCTTGATCGGTGATTGTAACTCCTGGTTCGAGC 480
Query 569 TCCAG-TTCTCTAAAGATGAATCAAACAGTGTTAATAATAATCCTCCCGGTTTAACCCGG 627
||| | ||||||||||| |||||||||| | || || ||||||||||||||||||||||
Sbjct 481 TCC-GTTTCTCTAAAGAAGAATCAAACA--G-TATTAGTAATCCTCCCGGTTTAACCCGG 536
Query 628 TTTATTCCGGTTAGTCGAATTTCCGGTCGTCATTCCTCGGCTGGTGAACGAGCGAGTCGA 687
||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 537 TTTGTTCCGGTTAGTCGAATATCCGGTCGTCATTCATCGGCTGGTGAACGAGCGAGTCGA 596
Query 688 CTCAACGAGATTAGAACATCTTCGTCGTATAAATCGAATCCGATGTCGTTTCGGAGATCA 747
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 597 CTCAACGAGATTAGAACATCGTCGTCGTCTAAATCGAATCCGATGTCGTTTCGGAGATCA 656
Query 748 CTCGATAGCTCTCTGAAAGTTAACGACGCCGGCGAGGAGAAATCGGAATCTGTCGCCGTT 807
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 CTCGATAGCTCTCTGAAAGTTAACGACGCCGGCGAGGAAAAATCGGAATCTGTCGCCGTT 716
Query 808 AATTGCTTGGATCGTCTACAGAGAAAAGACGGATTGTTGTTGATTCCGAATCGGGAGAGC 867
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 717 AATTGCTTGGATCGTCTACAGAGAAAAGACGGATTGTTGTTGATTCCGAATCAGGAGAG- 775
Query 868 T-TTGAGGGGAGATTTGAGCACCGGATAATTATCTCCGGCGGGAATCGAGACGATCAGAG 926
| | || ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 776 TATGGAAGGGAGATTTGAGCACCGGATAATAATCTCCGGCGGGAATCTAGATGATCAGAG 835
Query 927 GTGGAGCGAAGTAAGGCCGTCGGATCTTTTGTATTTACGATCAGAGATGATACTCAGCGA 986
||||||||| || |||||||||||||||||||| ||||| || ||||||||||| || ||
Sbjct 836 GTGGAGCGAGGTTAGGCCGTCGGATCTTTTGTACTTACGGTCGGAGATGATACTAAGTGA 895
Query 987 TTGCCGGAAATTAGCTGCGGCGGAGGGTGGCAGAGATGTAATTAACGGGAGAAGTGTGTC 1046
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 TTGCCGGAAATTAGCTGCGGCGGAGGGCGGCAGAGATGTAATTAACGGGAGAAGTGTGTC 955
Query 1047 GGAGTTAACGGGAATTGAGAGACGGAGGAGATGGGGAGGAGAGCCGAGACAACGACAAGC 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GGAGTTAACGGGAATTGAGAGACGGAGGAGATGGGGAGGAGAGCCGAGACAACGACAAGC 1015
Query 1107 CACGGCGGTGATTTCGAGGTGGCTCGCTTGGTCCCACCGTGCCTCCGCTTCCAGCATTgt 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CACGGCGGTGATTTCGAGGTGGCTCGCTTGGTCCCACCGTGCCTCCGCTTCCAGCATTGT 1075
Query 1167 ttaaaatttatattat-gatcctt 1189
|||||||||||||| | | |||||
Sbjct 1076 TTAAAATTTATATTTTTGGTCCTT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53326343000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5