BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05820.1
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487383 jgi|Araly1|487383|fgenesh2_kg.6__517__AT5G05820.1 2412 0.0
Ahg478471 jgi|Araly1|478471|fgenesh2_kg.3__1172__AT3G11320.1 1127 0.0
Ahg355897 jgi|Araly1|355897|fgenesh1_pg.C_scaffold_7003070 141 2e-32
> Ahg487383 jgi|Araly1|487383|fgenesh2_kg.6__517__AT5G05820.1
Length=1622
Score = 2412 bits (1306), Expect = 0.0
Identities = 1563/1676 (93%), Gaps = 62/1676 (4%)
Strand=Plus/Plus
Query 1 TGTTGTTGCAGCTTTAGCCCAAAGAtctctcctttttgcagagcttcttcttcttcttct 60
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1 TGTTGTTGCAGCTTTAGCCCAAAGATCTCTCCTTTCTGCAGAG------CTTCTTCTTCT 54
Query 61 ccaaaaatcccaactttcttctctttcccggtttcttcgtctccAGCATTTTCGCGTGTT 120
| | | ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 55 -------T-----C--T-TTCTCTTTCCCAGTTTCTTCGTCTCCATCATTTTCGCGTGTT 99
Query 121 GTAACCTAATCCAAATCTTACCCATTGATGGAATAACATCATCACGACGCGTCAAAATTC 180
|||||||||||| |||||||||||| |||||||||||||||||| |||||| | ||||||
Sbjct 100 GTAACCTAATCC-AATCTTACCCATCGATGGAATAACATCATCAGGACGCG-CCAAATTC 157
Query 181 TGTATCGGAGGACCGAGAGATCTCCATCTCCTGTCCAGATTCGATTCCCACCAATCCCAA 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 TGTGTCGGAGGACCGAGAGATCTCCATCTCCTGTCCAGATTCGATTCCCACCAATCCCAA 217
Query 241 TTTCGTGAAATTCGTTAGGGTTTTAGTTTGAATCTCATC--TCATCAGATCGAGTCGACC 298
|||| ||||||||| ||||||||||| || ||||||||| |||||||||||||||||
Sbjct 218 TTTCTTGAAATTCGCTAGGGTTTTAGATTAAATCTCATCAGTCATCAGATCGAGTCGA-- 275
Query 299 CAGGATTAGGAAGAAGAAAAGCGATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCG 358
| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 276 C---A-CAGGAAGAAGAAAA-CGATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCG 330
Query 359 GGCTAGTCG-CGTCTTGGTACTCATCGAACATTGGTGTATTGTTGCTGAACAAGTACTTG 417
||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 331 GGCTAGT-GACGTCATGGTACTCATCGAACATTGGAGTATTGTTGCTGAACAAGTACTTG 389
Query 418 CTTAGCAATTACGGATTCAAGTACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CTTAGCAATTACGGATTCAAGTACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGT 449
Query 478 TCGTTACTCAGCTACGTCGCCATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TCGTTACTCAGCTACGTCGCCATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGA 509
Query 538 TCCAGAGTTCAGTTCTTTAAGATCGCAGCTCTAAGTCTCGTTTTTTGTGTGTCGGTGGTC 597
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 510 TCCCGAGTTCAGTTCTTTAAGATCTCAGCTCTAAGTCTCGTTTTTTGTGTGTCGGTGGTC 569
Query 598 TTTGGTAACATCTCTCTCCGCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCTACG 657
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 570 TTTGGTAACATCTCTCTTCGCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCGACG 629
Query 658 ACGCCGTTTTTCACCGCCGTGTTTGCTTACCTGATGACGCGTAAGAAAGAGGCTTGGTTG 717
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 630 ACGCCGTTTTTCACCGCCGTGTTTGCTTACCTGATGACGCTTAAGAAAGAGGCTTGGTTG 689
Query 718 ACTTACTTCACTCTCGTCCCTGTCGTCACCGGAGTTGTTATTGCTAGTGGGGGTGAGCCA 777
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 690 ACTTACTTCACTCTCGTCCCTGTCGTCACCGGAGTTGTTATTGCCAGTGGGGGTGAGCCA 749
Query 778 AGCTTTCACCTGTTTGGATTCCTTATGTGCATTGCAGCAACAGCTGCGAGAGCACTTAAA 837
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 750 AGCTTTCACCTGTTTGGATTCCTTATGTGCATTGCAGCCACAGCTGCGAGAGCACTTAAA 809
Query 838 TCAGTGCTTCAAGGAATTTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTC 897
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TCCGTGCTTCAAGGAATTTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTC 869
Query 898 CTCCTTTACATGGCTCCAATAGCTGTCGTGCTCCTTCTGCCTGCTACTCTTATCATGGAG 957
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 870 CTCCTTTACATGGCTCCAATAGCTGTCGTGTTCCTTCTGCCTGCTACTCTTATCATGGAG 929
Query 958 AAAAATGTTGTCGGCATTACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AAAAATGTTGTCGGCATTACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTAT 989
Query 1018 CTTCTATTCAATTCAGCGCTCGCCTATTTAGTCAACTTGACAAATTTCTTAGTCAC-AAA 1076
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 990 CTTCTATTCAATTCAGCGCTCGCCTATTTCGTCAACTTGACAAATTTCTTAGTCACGAAA 1049
Query 1077 CCACACTAGCGCCCTGACTTTACAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGT 1136
| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1050 C-ACACTAGCGCCCTGACTCTGCAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGT 1108
Query 1137 GGTCTCTATTCTAATCTTCAAGAATCCGGTGTCAGTGACCGGAATGCTGGGTTACTCCCT 1196
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1109 GGTCTCTATTCTAATCTTCAAGAATCCGGTCTCAGTGACCGGAATGCTGGGTTACTCCCT 1168
Query 1197 CACCGTCTGTGGAGTTATCCTGTACAGCGAAGCCAAGAAACGAAACAAAAATTAGAACAC 1256
||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||
Sbjct 1169 CACCGTCTGTGGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAA--TGAGAACAC 1226
Query 1257 TAAACACACACAAAGCTTTTACTTCTTCTTCATCATTCCCCCCTATATATATGTTTTATA 1316
|||||| || |||||| |||||||||| | | || ||||||||||||||||||||
Sbjct 1227 CGAACACATACCAAGCTT---CTTCTTCTTC-T--T-CCTCCCTATATATATGTTTTATA 1279
Query 1317 TTTTCTCCCCTATGGATATACAGGCAAGTAGTCTCTTTTGCTGGG-CCAAACTGACTCTT 1375
||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1280 TTTTCTCCCTTACGGATACACAGGCAAGTAGTCTCTTTTGCTGTTACCAAACTGACTCTT 1339
Query 1376 GTCTTAATGAAAAGCTGGGCCAAAAACATCTCttttttttGGCAGAAACA-GAGAAGCAA 1434
||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||
Sbjct 1340 GTCTTAATGAAAAGCTGGGCCAAAAGCATGGAATTTTTT-GGCAGAAACACGAGAAGCAA 1398
Query 1435 AGCCACACAAAGATTGATTACCAAAGGCAAGAATTTAGAGAACTTCCTCCTATGAATAAG 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 AGCCACACAAAGATTGATTACCAAAGGCAAGAATTTAGAGAACTTCCTCCTATGAATAAG 1458
Query 1495 TAACCtttttgtttttcatttttGTTCTTTCTTCTCGGATTCTCTTGCCTTTCCT-CTGT 1553
|||||||||| || ||||| ||||||||| | ||||||||||||||||||| ||
Sbjct 1459 TAACCTTTTT-TTG---ATTTT-GTTCTTTCT-C--GGATTCTCTTGCCTTTCCTGCT-- 1508
Query 1554 AGGTTGTTTGTTGAATTAGGTTT-GTTTCTTCGATTCTTTACATTTTAGTTTTGTGATGT 1612
|||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1509 AGGTTGTTTGTTAAAATAGCTTTTGTTTCTTCGATTCTTTACATTTTAGTTTTGTGATGT 1568
Query 1613 CAACATTTTACAACAACACGGATTGATTCATTTAATCGAAAGAGAGAAAGTTCCTT 1668
|||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 1569 CAACATTT-ACAACAACACCGATTGATTAATT-AATCGAAAGAGAGAAAGTTCCTT 1622
> Ahg478471 jgi|Araly1|478471|fgenesh2_kg.3__1172__AT3G11320.1
Length=1594
Score = 1127 bits (610), Expect = 0.0
Identities = 827/932 (89%), Gaps = 14/932 (2%)
Strand=Plus/Plus
Query 321 GATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCGGGCTAGTCGCGTCTTGGTACTC 380
||||||||| ||| | ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 300 GATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACTCGTCGCGTCATGGTACTC 359
Query 381 ATCGAACATTGGTGTATTGTTGCTGAACAAGTACTTGCTT-AGCAATTACGGATTCAAGT 439
|||||| || || || ||||||||||||||||||||| || ||||| || ||||||||||
Sbjct 360 ATCGAATATCGGAGTTTTGTTGCTGAACAAGTACTTG-TTAAGCAACTATGGATTCAAGT 418
Query 440 ACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGTTCGT-TACTCAGCTACGTCGCC 498
| |||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 419 ATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTC-TCTTCTCAGCTACGTCGCC 477
Query 499 ATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGATCCAGAGTTCAG-TTCTTTAA 557
||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||| ||| ||||
Sbjct 478 ATTGCGTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTAGAGTTCAGTTTC-TTAA 536
Query 558 GATCGCAGC-TCTAAGTCTCGTTTTTTGTGTGTCGGTGGTCTTTGGTAACATCTCTCTCC 616
|||||| || | ||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 537 GATCGCTGCGT-TAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGGGAACATCTCTCTTC 595
Query 617 GCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCTACGACGCCGTTTTTCACCGCCG 676
| ||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 596 GGTTTCTTCCTGTATCGTTTAATCAAGCGATCGGTGCTACGACGCCGTTTTTCACCGCCG 655
Query 677 TGTTTGCTTACCTGATGACGCGT-AAGAAAGAGGCTTGGTTGACTTACTTCACTCTCGTC 735
|||||||||| ||||| ||| | |||| ||| |||||||||||||||||||||||||||
Sbjct 656 TGTTTGCTTATCTGATAACGT-TCAAGAGAGAAGCTTGGTTGACTTACTTCACTCTCGTC 714
Query 736 CCTGTCGTCACCGGAGTTGTTATTGCTAGTGGGGGTGAGCCAAGCTTTC-ACCTGTTTGG 794
||||| || ||||| ||||| ||||| ||||||||||| ||||| |||| ||||||||||
Sbjct 715 CCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGGGTGAACCAAG-TTTCCACCTGTTTGG 773
Query 795 ATTCCTTATGTGCATTGCAGCAACAGCTGCGAGAGCACTTAAATCAGTGCTTCAAGGAAT 854
|||| |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 774 ATTCATTATGTGCATTGCAGCCACAGCTGCAAGAGCACTTAAATCAGTTCTTCAAGGAAT 833
Query 855 TTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTCCTCCTTTACATGGCTCC 914
|||||| ||||| |||||||| ||||| || || ||||| ||||||||||||||||||||
Sbjct 834 TTTGCTATCTTCAGAAGGGGAGAAGCTAAATTCAATGAACCTCCTCCTTTACATGGCTCC 893
Query 915 AATAGCTGTCGTGCTCCTTCTGCCTGCTACTCTTATCATGGAGAAAAATGTTGTCGGCAT 974
|||||||| ||| |||| || |||||||| ||||||||||| ||||||||||| |||||
Sbjct 894 CATAGCTGTTGTGTTCCTCCTTCCTGCTACCCTTATCATGGAAAAAAATGTTGTTGGCAT 953
Query 975 TACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTATCTTCTATTCAATTCAGC 1034
||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 954 TACAATTGCGCTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCTATTCAATTCAGC 1013
Query 1035 GCTCGCCTATTTAGTCAACTTGACAAATTTCTTAGTCAC-AAACCACACTAGCGCCCTGA 1093
|| || ||||| || |||||||| |||||||||||||| |||| |||| ||||| ||||
Sbjct 1014 ACTAGCTTATTTCGTGAACTTGACCAATTTCTTAGTCACGAAAC-ACACCAGCGCTCTGA 1072
Query 1094 CTTTACAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGTGGTCTCTATTCTAATCT 1153
|| | ||||||||||||||||||||||| ||||||||||||||||| || || || || |
Sbjct 1073 CTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATCCATCCTGATAT 1132
Query 1154 TCAAGAATCCGGTGTCAGTGACCGGAATGCTGGGTTACTCCCTCACCGTCTGTGGAGTTA 1213
||| |||||| || |||||||| |||||| | |||||||| ||||| |||||||||||||
Sbjct 1133 TCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGTCTGTGGAGTTA 1192
Query 1214 TCCTGTACAGCGAAGCCAAGAAACGAAACAAA 1245
|||| |||||||||||||||||||||| ||||
Sbjct 1193 TCCTCTACAGCGAAGCCAAGAAACGAAGCAAA 1224
> Ahg355897 jgi|Araly1|355897|fgenesh1_pg.C_scaffold_7003070
Length=666
Score = 141 bits (76), Expect = 2e-32
Identities = 93/100 (93%), Gaps = 5/100 (5%)
Strand=Plus/Plus
Query 57 ttctccaaaaatcccaactttcttctctttcccggtttcttcgtctccAGCATTTTCGCG 116
|||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 572 TTCTCC-AAAATCCCAAC--T-TTCTCTTTCCCAGTTTCTTCGTCTCCAGCATTTTCGCG 627
Query 117 TGTTGTAACCTAATCCAAATCTTACCCATTGATGGAATAA 156
|||||||||||||||||| |||||||||| ||||||||||
Sbjct 628 TGTTGTAACCTAATCCAA-TCTTACCCATCGATGGAATAA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5