BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05830.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940012 jgi|Araly1|940012|scaffold_600556.1 976 0.0
Ahg482801 jgi|Araly1|482801|fgenesh2_kg.4__1861__AT2G37950.1 99.0 6e-20
Ahg496027 jgi|Araly1|496027|fgenesh2_kg.8__1843__AT5G59000.1 75.0 1e-12
> Ahg940012 jgi|Araly1|940012|scaffold_600556.1
Length=670
Score = 976 bits (528), Expect = 0.0
Identities = 625/670 (93%), Gaps = 13/670 (2%)
Strand=Plus/Plus
Query 125 TCATCCGGGTCTATACGAATATGGAATCCGTACAGCCACATCTCGAGACCTTTGTCTCTG 184
||||| |||||| ||||||||||||||| |||||||||||||| |||||| ||||| |||
Sbjct 1 TCATCTGGGTCTCTACGAATATGGAATCTGTACAGCCACATCTTGAGACCCTTGTCGCTG 60
Query 185 TTAAAGTAATCAATAGCTCAAGTGGC--T-GTGATGG--C-------GATGGAGAGCCTC 232
||||||||||| || ||||||||||| | ||||||| | ||||| |||| ||
Sbjct 61 TTAAAGTAATCCATGGCTCAAGTGGCTGTGGTGATGGCTCTGAAGATGATGGGGAGCTTC 120
Query 233 GTCGGAGCTCCGGTGCGGTGGAGAAGGAGGAAGAAATAGTGAAAGATGAGGAGAGGAGAT 292
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 121 GTCGGAGCTCCGGTGCGGTGGAGAATGAGGAAGAGATAGTGAAAGATGAGGAGAGGAGAT 180
Query 293 CCAATGCGTCGGTGTGTTCGGTGGAAATAGATCTGGAGCTTGGATTGCCTGAGAAAGTTG 352
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CCAATGCGTCGGTGTGTTCGGTGGAAGTAGATCTGGAGCTTGGATTGCCTGAGAAAGTTG 240
Query 353 TACATTTGTCGCAATCTGAGAGAGATTGCAGGATTTGTCACATGAGCTTAGATGCAGCGA 412
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 241 TACATTTGTCGCAATCTGAGAGAGATTGCAGGATTTGTCACATGAGTTTGGATGCAGCGA 300
Query 413 ATCTTGAATCTGGTGTTCCCATTGAGCTTGGCTGTTCTTGTAAAGCTGATCTCGCTGCTG 472
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 ATCTTGAATCTGGTGTTCCCATTGAGCTAGGCTGTTCTTGTAAAGCTGATCTCGCTGCTG 360
Query 473 CTCATAAACACTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACAAAATCTGTGAAGTTT 532
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CTCATAAGCACTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACAAAATCTGTGAAGTAT 420
Query 533 GTGGGTCGATTGCGGGTAATGTTGTTGGAAGTGTTGAGGTGGAGTCTGAGGAAAGCCGGA 592
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GTGGTTCGATTGCGGGTAATGTTGTTGGAAGTGTGGAGGTGGAGTCTGAGGAAAGCCGGA 480
Query 593 ATGAAGCAAATGGTGTAGAGAATCTAACTCTGAGAACATCTGGTCCACGATTGGTGGAAG 652
||||||||||||||||||||| || ||||||| ||||||| ||||| ||||||| |||||
Sbjct 481 ATGAAGCAAATGGTGTAGAGAGTCAAACTCTGCGAACATCCGGTCCGCGATTGGCGGAAG 540
Query 653 GTAGAAGCTTCTGGCAAGGTCACCGGTTCTTGAATTTCCTTTTAGCTTGTATGGTCTTTG 712
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAGAAGCTTCTGGCATGGTCACCGGTTCTTGAATTTCCTTTTAGCTTGTATGGTCTTTG 600
Query 713 CATTTGTTATCTCATGGCTCTTCCACTTCAATGTTCCTTCTACATAGCAACACAAGTAAT 772
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 601 CATTTGTGATCTCATGGCTCTTCCACTTCAATGTTCCCTCTACATAGCAAAACAAGTAAT 660
Query 773 GT-TCAACTC 781
| |||||||
Sbjct 661 GCCTCAACTC 670
> Ahg482801 jgi|Araly1|482801|fgenesh2_kg.4__1861__AT2G37950.1
Length=935
Score = 99.0 bits (53), Expect = 6e-20
Identities = 72/81 (89%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 445 TGTTCTTGTAAAG-CTGATCTCGCTGCTGCTCATAAACACTGTGCTGAGACTTGGTTCAA 503
||||||||||||| | ||| | |||| |||||||| ||| ||||||||||||||||||||
Sbjct 568 TGTTCTTGTAAAGAC-GATTTGGCTGTTGCTCATAGACAATGTGCTGAGACTTGGTTCAA 626
Query 504 GATCAAAGGAAACAAAATCTG 524
||||||||| ||||||||||
Sbjct 627 GATCAAAGGCGACAAAATCTG 647
> Ahg496027 jgi|Araly1|496027|fgenesh2_kg.8__1843__AT5G59000.1
Length=849
Score = 75.0 bits (40), Expect = 1e-12
Identities = 62/72 (86%), Gaps = 4/72 (6%)
Strand=Plus/Plus
Query 448 TCTTGTAAAGCTGATCTCGCTGCT-GCTCATA-AACACTGTGCTGAGACTTGGTTCAAGA 505
|||||||||| |||| | | || | ||||||| | | ||||||||||||||||||||||
Sbjct 385 TCTTGTAAAGGTGATTTGGGTG-TAGCTCATAGTA-AGTGTGCTGAGACTTGGTTCAAGA 442
Query 506 TCAAAGGAAACA 517
||||||||||||
Sbjct 443 TCAAAGGAAACA 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5