BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05830.1 Length=1019 Score E Sequences producing significant alignments: (Bits) Value Ahg940012 jgi|Araly1|940012|scaffold_600556.1 976 0.0 Ahg482801 jgi|Araly1|482801|fgenesh2_kg.4__1861__AT2G37950.1 99.0 6e-20 Ahg496027 jgi|Araly1|496027|fgenesh2_kg.8__1843__AT5G59000.1 75.0 1e-12 > Ahg940012 jgi|Araly1|940012|scaffold_600556.1 Length=670 Score = 976 bits (528), Expect = 0.0 Identities = 625/670 (93%), Gaps = 13/670 (2%) Strand=Plus/Plus Query 125 TCATCCGGGTCTATACGAATATGGAATCCGTACAGCCACATCTCGAGACCTTTGTCTCTG 184 ||||| |||||| ||||||||||||||| |||||||||||||| |||||| ||||| ||| Sbjct 1 TCATCTGGGTCTCTACGAATATGGAATCTGTACAGCCACATCTTGAGACCCTTGTCGCTG 60 Query 185 TTAAAGTAATCAATAGCTCAAGTGGC--T-GTGATGG--C-------GATGGAGAGCCTC 232 ||||||||||| || ||||||||||| | ||||||| | ||||| |||| || Sbjct 61 TTAAAGTAATCCATGGCTCAAGTGGCTGTGGTGATGGCTCTGAAGATGATGGGGAGCTTC 120 Query 233 GTCGGAGCTCCGGTGCGGTGGAGAAGGAGGAAGAAATAGTGAAAGATGAGGAGAGGAGAT 292 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 121 GTCGGAGCTCCGGTGCGGTGGAGAATGAGGAAGAGATAGTGAAAGATGAGGAGAGGAGAT 180 Query 293 CCAATGCGTCGGTGTGTTCGGTGGAAATAGATCTGGAGCTTGGATTGCCTGAGAAAGTTG 352 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 CCAATGCGTCGGTGTGTTCGGTGGAAGTAGATCTGGAGCTTGGATTGCCTGAGAAAGTTG 240 Query 353 TACATTTGTCGCAATCTGAGAGAGATTGCAGGATTTGTCACATGAGCTTAGATGCAGCGA 412 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 241 TACATTTGTCGCAATCTGAGAGAGATTGCAGGATTTGTCACATGAGTTTGGATGCAGCGA 300 Query 413 ATCTTGAATCTGGTGTTCCCATTGAGCTTGGCTGTTCTTGTAAAGCTGATCTCGCTGCTG 472 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 ATCTTGAATCTGGTGTTCCCATTGAGCTAGGCTGTTCTTGTAAAGCTGATCTCGCTGCTG 360 Query 473 CTCATAAACACTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACAAAATCTGTGAAGTTT 532 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 361 CTCATAAGCACTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACAAAATCTGTGAAGTAT 420 Query 533 GTGGGTCGATTGCGGGTAATGTTGTTGGAAGTGTTGAGGTGGAGTCTGAGGAAAGCCGGA 592 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 421 GTGGTTCGATTGCGGGTAATGTTGTTGGAAGTGTGGAGGTGGAGTCTGAGGAAAGCCGGA 480 Query 593 ATGAAGCAAATGGTGTAGAGAATCTAACTCTGAGAACATCTGGTCCACGATTGGTGGAAG 652 ||||||||||||||||||||| || ||||||| ||||||| ||||| ||||||| ||||| Sbjct 481 ATGAAGCAAATGGTGTAGAGAGTCAAACTCTGCGAACATCCGGTCCGCGATTGGCGGAAG 540 Query 653 GTAGAAGCTTCTGGCAAGGTCACCGGTTCTTGAATTTCCTTTTAGCTTGTATGGTCTTTG 712 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CTAGAAGCTTCTGGCATGGTCACCGGTTCTTGAATTTCCTTTTAGCTTGTATGGTCTTTG 600 Query 713 CATTTGTTATCTCATGGCTCTTCCACTTCAATGTTCCTTCTACATAGCAACACAAGTAAT 772 ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 601 CATTTGTGATCTCATGGCTCTTCCACTTCAATGTTCCCTCTACATAGCAAAACAAGTAAT 660 Query 773 GT-TCAACTC 781 | ||||||| Sbjct 661 GCCTCAACTC 670 > Ahg482801 jgi|Araly1|482801|fgenesh2_kg.4__1861__AT2G37950.1 Length=935 Score = 99.0 bits (53), Expect = 6e-20 Identities = 72/81 (89%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 445 TGTTCTTGTAAAG-CTGATCTCGCTGCTGCTCATAAACACTGTGCTGAGACTTGGTTCAA 503 ||||||||||||| | ||| | |||| |||||||| ||| |||||||||||||||||||| Sbjct 568 TGTTCTTGTAAAGAC-GATTTGGCTGTTGCTCATAGACAATGTGCTGAGACTTGGTTCAA 626 Query 504 GATCAAAGGAAACAAAATCTG 524 ||||||||| |||||||||| Sbjct 627 GATCAAAGGCGACAAAATCTG 647 > Ahg496027 jgi|Araly1|496027|fgenesh2_kg.8__1843__AT5G59000.1 Length=849 Score = 75.0 bits (40), Expect = 1e-12 Identities = 62/72 (86%), Gaps = 4/72 (6%) Strand=Plus/Plus Query 448 TCTTGTAAAGCTGATCTCGCTGCT-GCTCATA-AACACTGTGCTGAGACTTGGTTCAAGA 505 |||||||||| |||| | | || | ||||||| | | |||||||||||||||||||||| Sbjct 385 TCTTGTAAAGGTGATTTGGGTG-TAGCTCATAGTA-AGTGTGCTGAGACTTGGTTCAAGA 442 Query 506 TCAAAGGAAACA 517 |||||||||||| Sbjct 443 TCAAAGGAAACA 454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37894179498 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5