BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05840.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487384 jgi|Araly1|487384|fgenesh2_kg.6__518__AT5G05840.1 2734 0.0
> Ahg487384 jgi|Araly1|487384|fgenesh2_kg.6__518__AT5G05840.1
Length=1693
Score = 2734 bits (1480), Expect = 0.0
Identities = 1625/1696 (96%), Gaps = 6/1696 (0%)
Strand=Plus/Plus
Query 1 CGTAAGCAGAGTGAGAGAGCGTGCAGACACGACAAAACAAAAGGCCTCCCCACGTTCCGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGTAAGCAGAGTGAGAGAGCGTGCAGACACGACAAAACAAAAGGCCTCCCCACGTTCCGG 60
Query 61 TCGGTTGGTGACAACGACGAATGTCTTTTTTCTAATTTCAATCTCTTTTAAGTTTTCATC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCGGTTGGTGACAACGACGAATGTCTCTTTTCTAATTTCAATCTCTTTTAAGTTTTCATC 120
Query 121 AAATCCAAATTTCCCACAGATAGCCTCCCTCTCTTCACTCAGCTTAAATTTCTCCCTTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAATCCAAATTTCCCACAGATAGCCTCCCTCTCTTCACTCAGCTTAAATTTCTCCGTTC- 179
Query 181 AAA-CCCtttttttttt-gttt-ttGCGAATATGAGGAAACTTTGTCCGAATTACAACCT 237
||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 180 AAATTTTTTTTTTTTTTCTTTTCTTGCGGATATGAGGAAACTTTGTCCGAATTACAACCT 239
Query 238 CGAGGACGGGTTAGAGACCGTCCTAGAGGTTCCCATGCCTGAGGAGTTATTTGCTGCGTC 297
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CGAAGACGGGTTAGAGACCGTCCTCGAGGTTCCCATGCCTGAGGAGTTATTTGCTGCGTC 299
Query 298 CAAGACAAAACCTGGATGGAACCAAATGAAATCTTACTGGTCAAAACCTACCGCTACTGC 357
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 300 CAAGACAAAACCGGGATGGAACCAAATGAAGTCTTACTGGTCAAAACCCACCGCCACTGC 359
Query 358 TACCGGAACCGCAACAGCCACAAACATGACAAGACTCTTTGGTGGTCGTAATGCAGAGAT 417
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 360 AACCGGAACCGCAACAGCCACAAACATGACAAGACTCTTTGGTGGTCGCAACGCGGAGAT 419
Query 418 CCAGCTCCTTCTCGGAGTTGTTGGGGCTCCTTTGATCCCTCTCCCCGTTCAGCCTGACCA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CCAGCTCCTTCTCGGAGTTGTTGGGGCTCCTTTGATCCCTCTCCCCGTTCAGCCTGAACA 479
Query 478 CCATAACGATTATGAGAATCCCATCCACAAAGACATCAAAGACCAACCTCTCGAGATGTC 537
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 ACAAAACGATTATGAGAATCCCATTCACAAAGACATCAAAGACCAACCTCTCGAGATGTC 539
Query 538 GATGGCGCAATACATAGTAAAGCAGTACATAGCAGCGGTAGGAGGCGATCGAGCGTTAAA 597
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 540 GATGGCGCAATACATAGTGAAGCAGTACATAGCAGCGGTAGGAGGTGATCGGGCTTTAAA 599
Query 598 CGCGGTAGAGAGCATGTATGCGATGGGAAAAGTGAGGATGACAGCATCAGAGTTTTGCAC 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 600 CGCGGTAGAGAGCATGTATGCGATGGGAAAAGTGAGGATGACAGCATCAGAGTTCTGTAC 659
Query 658 AGGAGAAGGAAGCTTGAACAGCAAAATGGTAAAGGCAAGGAGTATCAAGAGTGGAGGAGG 717
||| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 660 AGGGGAAGGAAGCCTGAACAGCAAGATGGTGAAGGCAAGGAGTATCAAGAGTGGAGGAGG 719
Query 718 AGAAGTAGGAGGCTTTGTGCTGTGGCAAAAGGGGATAGAGTTATGGTGTCTTGAGCTTGT 777
||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 720 AGAAGTAGGAGGCTTTGTGTTGTGGCAGAAGGGAATAGAGTTATGGTGTCTTGAGCTCGT 779
Query 778 CGTTTCAGGCTGCAAAATCAGTGCCGGTAGTGACGCCAAAGTCGCTTGGAGACAAACTCC 837
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGTCTCAGGCTGCAAAATCAGTGCCGGTAGTGACGCCAAAGTCGCTTGGAGACAAACTCC 839
Query 838 GTGGCATCCTTCTCATGCCTCTCGTGGTCCTCCTAGACCATTGCGCCGTTTCCTCCAGGG 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATGGCATCCTTCTCATGCCTCTCGTGGTCCTCCTAGACCATTGCGCCGTTTCCTCCAGGG 899
Query 898 TCTTGATCCAAAATCAACGGCTAATCTATTTGCAAGATCAGTATGCATGGGAGAGAAGAA 957
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 900 TCTTGATCCAAAATCAACGGCTAATCTATTCGCGAGATCGGTATGCATGGGAGAGAAGAA 959
Query 958 GATAAATGATGAAGACTGTTTCATACTCAAACTTGATGCTGAGCCATCGGCGCTTAAGGC 1017
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 960 GATAAATGATGAAGACTGTTTCATACTCAAACTCGACGCTGAGCCATCCGCGCTTAAGGC 1019
Query 1018 GAGAAGCAGCAGCAATGTTGAGATCATACGGCACACTGTGTGGGGATGTTTCAGCCAGAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAGAAGCAGCAGCAATGTTGAGATCATACGGCACACTGTGTGGGGATGTTTCAGCCAGAG 1079
Query 1078 AACAGGTCTTTTGATTCAACTTGAAGACTCTCACCTTCTAAGAATCAAAGCTCAAGACGA 1137
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AACAGGTCTTCTGATTCAACTTGAAGACTCTCACCTTCTAAGAATCAAAGCTCAAGACGA 1139
Query 1138 TAACAGTATATTTTGGGAGACAACAATGGAGTCTTTGATCCAAGATTACAGGACCGTTGA 1197
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 TAATAGTATATTCTGGGAGACAACCATGGAGTCTTTGATCCAAGATTACAGGACCGTTGA 1199
Query 1198 TGGTATCTTGGTAGCACACGCTGGTAAAAGCTCGGTGTCTCTGTTTCGGTTTGGTGAGAA 1257
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 TGGTATCCAGGTAGCACACGCTGGTAAAAGCTCGGTGTCTCTGTTTCGATTTGGTGAGAA 1259
Query 1258 CTCGGATAATCATTCGAGGACTCGGATGGAAGAGACTTGGGAGATTGAGGAAATGGATTT 1317
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTCGGATAATCACTCTAGGACTCGGATGGAAGAGACTTGGGAGATTGAGGAAATGGATTT 1319
Query 1318 TAACATTAAGGGTCTGTCTATGGATTGTTTTTTACCGCCTTCTGACCTGAAGAAGGACGA 1377
|||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1320 TAACATAAAGGGTTTGTCTATGGATTGTTTTTTACCGCCTTCTGATCTCAAGAAGGACGA 1379
Query 1378 TGATGAAGAAGAAGAAATCGAATGTGGTTTAGCTGCTAATAATGAGAAGCTGCCTATGAA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGATGAAGAAGAAGAAATCGAATGTGGTTTAGCTGCTAATAATGAGAAGCTGCCTATGAA 1439
Query 1438 AATCCGAAGCGCTTCTTTGAGGATTAGTTCCTCAAAGGTCTTAGCAATTGTGGAAGAAGA 1497
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1440 AATCCGAAGCGCTTCTTTGAGGATTAGTTCCTCAAAGATCTTAGCAATTGTGGAAGAAGA 1499
Query 1498 AGATGAATCAGAGGTCACTGAAGAGACATAAAAGCATGGCCTGAGTTTCGGTTTTTGTAC 1557
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1500 AGATGAATGAGAGGCCACTGAAGAGACATAAAAGCATGGCCCGAGTTTCGGTTTATGTAC 1559
Query 1558 ATAGCCTTTTTAATCTATTGCAACATGGAAACAGAGGAttttttctatttttggtttttG 1617
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1560 ATAA--TTTTTAATCTATTGAAACATGGAAACAGAGGATTTTTTCTATTTTTGGTTTTTG 1617
Query 1618 AGTTCCTCTGTAAATCACTGAACTCTTGGGATGCAAAATGCAATGCAAGTGATCAGATCA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1618 GGTTCCTCTGTAAATCACTGAACTCTTGGGATGCAAAATGCAATGCAAGTGATCAGTTCA 1677
Query 1678 TTCATAATACAATGAG 1693
||||||||||||||||
Sbjct 1678 TTCATAATACAATGAG 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5