BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05850.1
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487385 jgi|Araly1|487385|fgenesh2_kg.6__519__AT5G05850.1 2700 0.0
Ahg317922 jgi|Araly1|317922|fgenesh1_pm.C_scaffold_3000938 584 7e-166
> Ahg487385 jgi|Araly1|487385|fgenesh2_kg.6__519__AT5G05850.1
Length=1672
Score = 2700 bits (1462), Expect = 0.0
Identities = 1605/1674 (96%), Gaps = 9/1674 (1%)
Strand=Plus/Plus
Query 15 cttcttcttcttcttcCT-CAATCTCCCAATCGTCTCTTC-CATCAAGCTCCCAACAATG 72
||||||||||||||| || |||| ||||||| |||||||| | |||||||| ||||||||
Sbjct 1 CTTCTTCTTCTTCTT-CTCCAATTTCCCAATTGTCTCTTCTC-TCAAGCTCTCAACAATG 58
Query 73 GCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTATGTCTTGGATCGTCTCCCT 132
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 GCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTACGTCTTGGATCGTCTCCCT 118
Query 133 TCATTCACCGCCAAATCCTCTTCCTCTTCCGATGTCGAGCCACCACCATCCAAATCCGAT 192
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 TCCTTCACCGCCAAATCCTCTTCCTCTTCCGATGTCGACCCACCACCATCCAAATCCGAT 178
Query 193 CCTTCTTCATCATCAAACCACTCTATCGAGATAGTGACTCAGATGCCTCACTTGGCTCAT 252
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 CCTTCTTCATCATCAAACCACTCTATCGAGATCGTGACTCAGATGCCTCACTTGGCTCAT 238
Query 253 CCTGATGTTCTTGCCTCCATGACTAACGCAACCGCCGACGTTTCTCAGACCCGATCTGTT 312
||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||
Sbjct 239 CCTGATGTTCTTGCCTCCATGACTAACGCTATCGCCGACGTTGCTCAGACCCGATCCGTT 298
Query 313 CTTCGAACCCTAGGACCAAGACCCGATCACGAAACCGTCGACAGAGCTCGTGCTAGGCTC 372
||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 299 CTTCGAACCCTAGGACCTAGACCTGATCACGAAACCGTCGACAAAGCTCGTGCCAGGCTC 358
Query 373 CGTGAGATCGACGCGTCTTTGTCGGAATCTTTCGAAGAGATCGCTCTCTCTCCTAACGAT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 CGTGAGATCGACGCGTCTTTGTCGGAATCTTTCGAAGAGATCGCTCTCTCTCCGAACGAT 418
Query 433 ATTGACGTGGCGGAGAAGGAACAGAAGAGGAGAGAAGCTGTGGAGCAAGAGAAGATTTGG 492
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct 419 ATTGACGTGGCGGAGAAGGAACTGAAGAGGAGAGAAGCTGTGGATCAAGAGAAGACTTGG 478
Query 493 TATAAATCGATCCTTAAGCTTAACGAGCTTCATGAATCTTATGAGAAGCTTTTGAAAGAA 552
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATAACTCGATCCTTAAGCTTAACGAGCTTCATGAATCTTATGAGAAGCTTTTGAAAGAA 538
Query 553 GCAGAGGAGAGGCTCGTGAGGATCTATGAGTCTGCCGAGAAGAATGCTGCCGCGGTGGCG 612
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 539 GCAGAGGAGAGGCTCGTGAGGATCTATGAGTCCGCCGAGAAGAATGCGGCCGCGGTGGCG 598
Query 613 GAGGAGGAAGCTGCGGAGGTTGAAGTCAATGAAGAGGTTGTGAGTATACTGCAACAAGCT 672
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 599 GAGGAGGAAGCTGCGGTGGTTGAAGTTAATGAAGAGGTTGTCAGTATACTGCAACAAGCT 658
Query 673 GCGGAGAATCCATTGGACCGAGTTGATTTGTCTGGTCGGAAATTGAAGTTGCTTCCTGAA 732
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 GCGGTGAATCCATTGGACCGAGTTGATTTGTCTGGTCGGAAATTGAAATTGCTTCCTGAA 718
Query 733 GCATTTGGAAAGATTCAAGGTCTCCTTGTTCTTAATCTCTATAACAATCAGCTTCAGGCT 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 GCATTTGGAAAGATTCAAGGTCTCCTTGTTCTTAATCTCTATAACAATCAGCTTGAGGCT 778
Query 793 ATTCCTGATTCGATAGCTGGTTTGCATAACCTTCTCGAACTCGATGTTTCCACTAATTTC 852
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 779 ATTCCTGATTCGATAGCTGGTTTGCAAAACCTTCTCGAACTCGATGTTTCCACGAATTTT 838
Query 853 CTGGAGACATTACCAGATTCGATCGGTTTATTGTCAAAGTTGAAGATTTTGAATGTCTCT 912
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTAGAGACATTACCCGATTCGATCGGTTTATTGTCAAAGTTGAAGATTTTGAATGTCTCT 898
Query 913 TGTAACAAACTCACAACTTTACCAGATTCCATCTGCCATTGTGGATCGTTGGTTGTCTTG 972
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 TGTAACAAACTCACAACTTTACCAGATTCCATCTGCCATTGTGGATCTTTGGTTGTCTTG 958
Query 973 GATGCGAGCTACAACAATCTCACCTACTTACCAACAAACATCGGATTCGAGCTAGTGAAA 1032
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 GATGCGAGCTACAACAATCTCACCTACTTACCAACAAACATTGGATTCGAGCTAGTGAAA 1018
Query 1033 CTAGAGAAGCTCTTGATCCATCTCAACAAAATCAGATCATTACCAACTTCCATTGGTGAA 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTAGAGAAGCTCTTGATCCATCTCAACAAAATCAGATCATTACCAACTTCCATTGGTGAA 1078
Query 1093 ATGAGATCCTTACGCTACCTCGATGCACACTTCAACGAACTCAATGGTCTCCCAAATTCT 1152
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 ATGAGATCCTTACGCTACCTCGATGCACACTTCAACGAACTCAACGGTCTCCCAAATTCT 1138
Query 1153 TTCGGGCTGCTCACGAACCTCGAGTACCTTAACCTGAGCAGTAACTTCAGCGATCTCCAA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTCGGGCTGCTCACGAACCTCGAGTACCTTAACCTGAGCAGTAACTTCAGCGATCTCCAA 1198
Query 1213 GATCTCCCTGCTTCATTCGGAGATCTCATAAGCCTCCAAGAACTCGACTTGAGCAACAAC 1272
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GATCTACCTGCTTCATTTGGCGATCTCATAAGCCTCCAAGAACTCGACTTGAGCAACAAC 1258
Query 1273 CAGATCCATTCTCTTCCAGACGCTTTTGGCACGCTCGTGAACTTGACCAAACTGAACTTG 1332
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1259 CAGATCCATTCTCTTCCAGACGCTTTTGGCACGCTCGTGAACCTGACCAAACTGAACTTG 1318
Query 1333 GACCAAAACCCGCTTGTTGTCCCGCCTGATGAAGTCGTGAAACAAGGTGTGGATGCGGTT 1392
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1319 GACCAAAACCCGCTCGTGGTCCCGCCTGAGGAAGTCGTGAAACAAGGCGTGGATGCGGTT 1378
Query 1393 AAAATGTATATGGGTAAGAGATGGGTCAGCATGTTGGAAGAGGAAGAGAAGATGGCGAAT 1452
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1379 AAAATGTATATGGGTAAGAGATGGGTCAGTATGTTGGAAGAGGAAGAGAAGATGGCGAAT 1438
Query 1453 ATGAAGGATGAGATGGATCAGACAAACACCGATTGGCTCACCCGAACCACCTCGAAGCTG 1512
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1439 ATGAAGGATGAGATGGATCAGACAAACACCGATTGGCTCACCCGAACCACATCGAAGCTG 1498
Query 1513 AAAACGTATGTTACTGAGGTCTCGGAGTATCTTGGCTCGAATCCGCCTAGAGATCCTTAC 1572
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1499 AAAACGTATGTTACTGAGGTCTCAGAGTATCTTGGCTCGAATTCGCCTAGAGATCCTTAC 1558
Query 1573 CTTGACCAGCAGCTATGAAATGACTTTGAGCTTCATTTTACATTTTCGTGACGATATCTC 1632
|||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||| |||
Sbjct 1559 CTTGACCAGCAGCTATGAAATGGCTTTGAGCTTCATTTAACATTTTCTTGATGATGTCTG 1618
Query 1633 AAGTATCAGTTTCCA----AA-GTGATCTTCAGTCTTGAGTTTTCCTGCCGCTG 1681
||| ||||||||||| || ||||||||||||||| || |||||| ||||||
Sbjct 1619 AAGAATCAGTTTCCACTCCAAAGTGATCTTCAGTCTTCAGATTTCCTTCCGCTG 1672
> Ahg317922 jgi|Araly1|317922|fgenesh1_pm.C_scaffold_3000938
Length=1614
Score = 584 bits (316), Expect = 7e-166
Identities = 656/818 (80%), Gaps = 31/818 (4%)
Strand=Plus/Plus
Query 787 CAGGCTATTCCTGATTCGATAGCTGGTTTGCATAACCTTCTCGAACTCGATGTTTCCACT 846
||||| ||||||||||| |||||||| ||||||| ||| | ||||| ||||| |||||
Sbjct 814 CAGGCGATTCCTGATTCAATAGCTGGATTGCATAGTCTTGTTGAACTGGATGTCTCCACG 873
Query 847 AATTTC-CTGGAGACATTACCAGATTCGATCGGTTTATTGT-CAAAGTTGAAGATTTTGA 904
|| ||| |||||||||||||| ||||| ||||||||| ||| |||| |||| || |||
Sbjct 874 AA-TTCTCTGGAGACATTACCTGATTCTATCGGTTTACTGTCCAAA-CTGAAAATCCTGA 931
Query 905 ATGTCTCTTGTAACAAACTCACA-ACTTTACCAGATTCCATCTGCCATTGTGGATCGTTG 963
|||| || |||||| |||||| | || || || |||||||||| ||||| ||||||
Sbjct 932 ATGTTTCGACTAACAAGCTCACATGC-TTGCCTGACTCCATCTGCCGCTGTGGGTCGTTG 990
Query 964 GTTGTCTTGGATGCGAGCTACAACAATCTCACCTACTTACCAACAAACATCGGAT-TCGA 1022
||| |||| || | ||||| |||| |||||||||||||||||| ||||| || | ||||
Sbjct 991 GTTATCTTAGACGTGAGCTTCAACCGTCTCACCTACTTACCAACCAACATTGG-TCTCGA 1049
Query 1023 GCTAGTGAAACTAGAGAAGCTCTTGATCCA-TCTCAACAAAATCAGATCATTACCAACTT 1081
||||||||| ||||| |||||| || | || | | ||||| ||| ||||||| || ||
Sbjct 1050 GCTAGTGAATCTAGAAAAGCTCCTGGTTCAGTAT-AACAAGATCCGATCATTCCCGAC-- 1106
Query 1082 CCAT-T-GGTGAAATGAGAT-CCTTACGCTACCTCGATGCACACTTCAACGAAC-TCAAT 1137
| || | || |||||||||| ||| | | || | || || ||||||||||||| || ||
Sbjct 1107 CAATATAGGCGAAATGAGATCCCTAAAAC-ACTTGGACGCCCACTTCAACGAACTTC-AT 1164
Query 1138 GGTCTCCCAAATTCTTTCGGGCTGCTCACGAACCTCGAGTACCTT-AACCTGAGCAGTAA 1196
|| || || ||||||||| | ||||||| ||||||||||| ||| ||||| ||||| ||
Sbjct 1165 GGCCTTCCTGATTCTTTCGTGTTGCTCACAAACCTCGAGTA-CTTAAACCTAAGCAGCAA 1223
Query 1197 CTTCAGCGATCTCCAA-GATCTCCCTGCTTCATTCGGAGATCTCATAAGCCTCCAAGAAC 1255
|||||| ||||| ||| ||||||||| | ||||| || || |||||||||||||||||||
Sbjct 1224 CTTCAGTGATCT-CAAGGATCTCCCTTCCTCATTTGGGGACCTCATAAGCCTCCAAGAAC 1282
Query 1256 TCGACTTGAGCAACAACCAGATCCATTCTCTTCCAGACGCTTTTGGCACGCTCG-TGAAC 1314
|||||||||| |||||||| |||||| | || |||||| |||||||||| |||| | | |
Sbjct 1283 TCGACTTGAGTAACAACCAAATCCATGCCCTCCCAGACACTTTTGGCACACTCGAT-AGC 1341
Query 1315 TTGACCAAACTGAACT-TGGACCAAAACCCGCTTGTTGTCCCGCCTGATGAAGTCGTGAA 1373
|||||||||| || | |||| || |||||||| || ||||| ||||| ||||| |||||
Sbjct 1342 CTGACCAAACTAAA-TGTGGATCAGAACCCGCTCGTGGTCCCACCTGAGGAAGTGGTGAA 1400
Query 1374 ACAAGGTGTGGATGCGGTTAAAATGTATATGGGTAAGAGATGGGTCAGCATGTTGGAAGA 1433
||||||| || || || || | ||| |||||| ||||| || |||| |||||||||||
Sbjct 1401 GGAAGGTGTTGAAGCTGTGAAGACGTACATGGGTCAGAGAAGGATCAGAATGTTGGAAGA 1460
Query 1434 GGAAGAGAAGATGGCGAATATGAAGGATGAGATGGATCAGACAAACACCGATTGGCTCAC 1493
||||||||||| | || ||| |||| |||||||| ||| ||||| ||| ||||||||
Sbjct 1461 GGAAGAGAAGAAGA--AA-ATGGAGGAGGAGATGGAGCAGGCAAACGCCGGGTGGCTCAC 1517
Query 1494 CCGAACCACCTCGAAGCTGAAAACGTATGTTACTGAGGTCTCGGAGTATCTTGGCTCGAA 1553
|||||||| ||||| |||||||| ||||| | || || || |||||||| || | ||
Sbjct 1518 ACGAACCACATCGAAACTGAAAACTTATGTCGCAGATGTTTCAGAGTATCTCGGAACAAA 1577
Query 1554 TCCGCCTAGAGATCCTTACCTTGACC-AGCAGCTATGA 1590
| | ||| |||| ||||||||||| | | || ||||||
Sbjct 1578 TTCTCCTCGAGACCCTTACCTTGAGCGA-CAACTATGA 1614
Score = 357 bits (193), Expect = 2e-97
Identities = 574/749 (77%), Gaps = 61/749 (8%)
Strand=Plus/Plus
Query 70 ATGGCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTATGTCTTGGATCGTCTC 129
|||||| | || | |||||||||||| |||||||| |||||||| ||||||| |||||||
Sbjct 1 ATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTACGTCTTGGCTCGTCTC 60
Query 130 CCTTCATTCACCGCCAAA------TCCT-CT--TCCT-C--T--T-CC---GATGTCGAG 171
||||| |||||||||||| |||| || |||| | | | || ||| ||||
Sbjct 61 CCTTCTTTCACCGCCAAATCCCCTTCCTCCTCCTCCTCCGTTCCTCCCTTTGATATCGAA 120
Query 172 CCACCACCATCCA-AATCCGATC--CTTCTTCATCATCAAACCACTCTATCGAGATAGTG 228
| |||||||| || || | ||| | || |||||||||| ||| || ||||| || ||
Sbjct 121 CAACCACCAT-CATCAT-C-ATCATCATCATCATCATCAAGCCAATCGATCGAAATCGTT 177
Query 229 ACTCAGATGCCTCACTTGGCTCATCCTGATGTTCTTGCCTCCATGACTAACGCAACCGCC 288
|||||||||||||| || | || || ||||| || || || ||||| | || | | |
Sbjct 178 ACTCAGATGCCTCATTTAACACAACCAGATGTACTCGCTTCAATGACCAGTGCGATCTCT 237
Query 289 GACGTTTCTC-AGACCCGATCTGTTCTTCGAACCCTAGGACCAAGACCCGATCACGAAAC 347
||||| | | |||| |||||| | ||||||||||||||||| ||||| |||||||| |
Sbjct 238 GACGTCGC-CGAGACTCGATCTATCCTTCGAACCCTAGGACCTAGACCTGATCACGAGTC 296
Query 348 CGTCGAC-AGAGCTCGTGCTAGGCTC-CGTGAGATCGACGCG-TCTTTGTCGGAATC-TT 403
||||||| || |||||||||| |||| || || ||||| || || || || ||||| ||
Sbjct 297 CGTCGACAAG-GCTCGTGCTAAGCTCTCG-GAAATCGAATCGTTC-TTATCTGAATCGTT 353
Query 404 TCGAAGAGATCGCTCTCTCTCCTAACGATATTGACGTGGCGGAGAAGGAACAGAAGAGGA 463
| | || ||| || | || || || ||| | ||||| ||| || |||||||||
Sbjct 354 T-G-AG-GAT--ATCGCGCT--TACCG--ATT--C--GGCGGCGAAAGATGAGAAGAGGA 400
Query 464 GAGAAGCTG-TGGAGCAAGAGAAGATTTGGTATAAATCGATCCTT-AAGCTTAACGAGCT 521
|| ||| | |||| || ||||||| ||||| | | ||| | || |||||| | ||| |
Sbjct 401 GACAAG-AGATGGATCAGGAGAAGACTTGGTGTGAGTCGGT-TTTGAAGCTTGATGAGGT 458
Query 522 TCATGAATCTTATGAGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTCGTGAGGATCTATGA 581
||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 459 TCATGCTTCGTATGAGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTTGTCAGGATTTATGA 518
Query 582 GTCTGCCGAGAAGAATGCTGCCGCGGTGGCGGAGGAGGAA-GCTGCGGAGGTTGAAGTCA 640
||||| ||||||||||| | |||| || |||||| || | ||||| ||| || || |
Sbjct 519 ATCTGCTGAGAAGAATGC-G--GCGGAGGATGAGGAG-AATGTTGCGGCGGTGGAGGTTA 574
Query 641 ATGAAGAGGTTGT-GAGTATACTGCAACAAGCTGCGGAGAATCCATTGGACCGAGTTGAT 699
|||| |||||||| | | ||| |||| || ||| ||| ||||| |||| || || |||
Sbjct 575 ATGAGGAGGTTGTTGGG-ATATTGCAGCACGCTTCGGCCAATCCGGTGGATCGTGTGGAT 633
Query 700 TTGTCTGGTCGGAAATTGA-AGTTGCTTCCTGAAGCATTTGGAAAGATTCAAGG-TCTCC 757
|||||||| ||||||||| | ||||| |||||||| ||||| | ||||||||| | | |
Sbjct 634 TTGTCTGGGAGGAAATTGAGA-TTGCTACCTGAAGCTTTTGGGAGGATTCAAGGGT-TGC 691
Query 758 TTGTTCTTAATCTCTATAACAATCAGCTT 786
||||||||||||| | |||||| |||||
Sbjct 692 TTGTTCTTAATCTTTCCAACAATAAGCTT 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70466953250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5