BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05860.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487386 jgi|Araly1|487386|fgenesh2_kg.6__520__AT5G05860.1 2128 0.0
Ahg940017 jgi|Araly1|940017|scaffold_600561.1 311 1e-83
Ahg487389 jgi|Araly1|487389|fgenesh2_kg.6__523__AT5G05900.1 226 4e-58
> Ahg487386 jgi|Araly1|487386|fgenesh2_kg.6__520__AT5G05860.1
Length=1490
Score = 2128 bits (1152), Expect = 0.0
Identities = 1384/1495 (93%), Gaps = 19/1495 (1%)
Strand=Plus/Plus
Query 9 aaaaaaaaaaaCTAGAGCGTTTCAATTACAATGGAGGAGAAGAGAAATGGTCTGCGTGTG 68
|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 2 AAAAAAAAAAACCAGAGCTTTTCAATTTCAATGGAGGAGAAGAGAAATGGTCTGCGAGTG 61
Query 69 ATTCTCTTCCCTCTTCCATTACAAGGTTGCATCAACCCTATGCTTCAGCTCGCCAACATC 128
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 62 ATTCTCTTCCCTCTTCCATTACAAGGTTGCATAAACCCTATGATTCAGCTTGCCAACATC 121
Query 129 CTTCACGT-AAGAGGCTTCTCCATTACCGTGATCCACACGCGCTTCAACGCGCCAAAAGC 187
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CTTCAC-TCGAGAGGTTTCTCCATTACCGTGATCCACACGCGCTTCAACGCGCCAAAAGC 180
Query 188 TTCAAGCCATCCTCTCTTCACTTTCTTACAGATTCCTGATGGTTTGTCTGAAACGGAGAT 247
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 181 TTCAAGCCATCCTCTCTTCACTTTCTTACAGATTTCTGATGGCTTGTCTGAAACTCAGAC 240
Query 248 TCAAGATGGTGTTATGTCTTTGCTCGCGCAAATCAACCTTAACGCTGAGTCTCCGTTTCG 307
| |||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 241 TAAAGATGATGTTATGTCTTTGCTTGCACAAATCAACATTAACGCTGAGTCTCCGTTTCG 300
Query 308 TGATTGCTTGCGTAAAGTGTTGCTGGAATCAAAAGAGTCAGAGAGGGTTACTTGTTTGAT 367
||||||||||||| || ||||||| ||||| ||||| ||||||||||||| |||||||||
Sbjct 301 TGATTGCTTGCGTGAACTGTTGCTTGAATCGAAAGAATCAGAGAGGGTTAGTTGTTTGAT 360
Query 368 CGATGACTGTGGATGGCTCTTCACACAATCTGTTTCAGAGAGTTTGAAGCTTCCGAGGCT 427
|||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||
Sbjct 361 CGATGATTGTGGATGGCTCTTCACACAAACTGTTGCAGAGAGTTTGAATCTTCCAAGGCT 420
Query 428 CGTTCTCTGTACTTTTAAAGCCACTTTCTTCAATGCTTATCCGAGTCTTCCACTTATCCG 487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTTCTCTGTACTTTTAAAGCCACTTTCTTCAATGCTTATCCGAGTCTTCCACTTATCCG 480
Query 488 AACCAAGGGATATCTTCCAGTTTCAGAATCGGAAGCAGAGGACTCTGTTCCTGAGTTCCC 547
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 AACCAAAGGATATCTTCCAGTTTCAGATTCGGAAGCAGAGGACTCTGTTCCTGAGTTCCC 540
Query 548 GCCGCTTCAAAAGAGAGATCTTTCAAAGGTTTTCGGGGAGTTCGGAGAGAAACTCGATCC 607
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 541 GCCGCTTCAAAAGAGAGATCTTTCAAAGGTTTTCGGGGAATTCGGAGAGAAACTTGATCC 600
Query 608 GTTCTTACATGCTGTAGTCGAAACGACAATAAGATCTTCAGGGTTAATATACATGTCCTG 667
|||||||||||||||||||||||||||||| || ||||||||| |||||| |||||| ||
Sbjct 601 GTTCTTACATGCTGTAGTCGAAACGACAATGAGCTCTTCAGGGCTAATATTCATGTCTTG 660
Query 668 CGAAGAGCTTGAGAAAGATTCGTTGACTCTTTCTAACGAAATTTTTAAAGTTCCGGTTTT 727
||||||||||||||||||||| |||||| || ||||||||||||| ||||||| | ||
Sbjct 661 CGAAGAGCTTGAGAAAGATTCATTGACTATTGCTAACGAAATTTTCGAAGTTCCCATCTT 720
Query 728 TGCAATTGGTCCGTTTCACAGCTACTTCTCTGCTTCGTCAAGCAGCTTGTTCACACAAGA 787
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 721 TGCGATTGGTCCGTTTCACAGCTACTTCTCTGCTTCATCAAGCAGCTTATTCACACAGGA 780
Query 788 CGAGACTTGCATTC-TGTGGTTAGATGATCAAGAAG-ATAAATCTGTGATCTACGTTAGT 845
|||||||||||||| | ||||||| | ||||| ||| | ||||| || |||||||| |||
Sbjct 781 CGAGACTTGCATTCCT-TGGTTAGGTAATCAA-AAGGACAAATCCGTTATCTACGTGAGT 838
Query 846 CTAGGAAGCGTTGTGAACATAACGGAAACAGAGTTCTTGGAGATTGCGTGTGGTTTAAGC 905
||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct 839 CTAGGAAGCGTTGTGAATATTACGGAGACAGAGTTCTTGGAGATTGCTTGTGGTTTAAGC 898
Query 906 AATAGCAAACAGCCTTTCTTGTGGGTAGTACGACCCGGTTCAGTACTCGGCGCGAAATGG 965
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 AATAGCAAACAGTCTTTCTTGTGGGTAGTACGACCCGGTTCAGTACTCGGCGCGAAGTGG 958
Query 966 ATCGAACCGCTCTCTGAAGGGCTGGTTAGTAGCCTTGAAGAGAAAGGAAAGATTGTGAAA 1025
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 959 ATCGAACCGCTCTCTGAAGGGCTCGTTAAAATCCTTGAAGAGAAAGGAAAGATTGTGAAA 1018
Query 1026 TGGGCACCACAACAGGAGGTTCTTGCGCATCGTGCCACAGGAGGGTTTTTGACACACAAT 1085
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1019 TGGGCACCACAACAGGAGGTTCTTGCGCATCGAGCCATTGGAGGGTTTTTGACACACAAT 1078
Query 1086 GGTTGGAACTCAACGCTAGAGAGTATATGCGAAGGGGTTCCTATGATCTGCCTACCAGGA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1079 GGTTGGAACTCAACGCTAGAGAGTATATGCGAAGGGGTTCCTATGATCTGCTTACCAGGA 1138
Query 1146 GGTTGGGATCAAATGCTGAATTCAAGATTTGTTAGCGATATTTGGAAGATTGGAATTCAC 1205
|||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 1139 GGTTGGGATCAAATGCTGAATTCAAGATTTGTGAGCGATATTTGGAAGGTCGGAATTCAT 1198
Query 1206 TTGGAAGGTCGGATTGaaaaaaaGGAGATTGAGAAAGCTGTGAGGGTGTTAATGGAGGAA 1265
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 TTGGAAGGTCGGATTGAACAAAAGGAGATTGAGAAAGCTGTGAGGATGTTAATGGAGGAA 1258
Query 1266 AGTGAAGGA-AATAAGATTCGTGAGAGAATGAAAGTTCT-GAAAGATGAGGTCGAGAAAT 1323
| ||||||| || |||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1259 AATGAAGGAGAA-AAGATTCGTGAGAGGATGAAAGT-CTTGAAAGATGAGGTCGAGAAAT 1316
Query 1324 CGGTCAAACAAGGAGGCTCATCTTTTCAATCTATTGAGACTCTAGCTAATCATATACTAT 1383
|||| ||||| || |||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1317 CGGTTAAACATGGTGGCTCATCTTTTCAATCTATCGAGACTCTAGCTAATCATATATTAT 1376
Query 1384 TGTTGTAAGTTGGGAATATTTGCTAAAGATACCTCAACGTTTCTATAAATTG-C------ 1436
|||||||||||||||||||| || ||||||||| ||||||||||||||||| |
Sbjct 1377 TGTTGTAAGTTGGGAATATTGGCCAAAGATACCGCAACGTTTCTATAAATTTTCTTTTTC 1436
Query 1437 AAAAAGAAAAGCACTTGATTATATTGTCTGTTGTCTAAAACAAACC-AAACATTC 1490
||||||||||| ||||||||||||| |||||||||||||| ||||| ||| ||||
Sbjct 1437 AAAAAGAAAAGAACTTGATTATATTTTCTGTTGTCTAAAATAAACCTAAA-ATTC 1490
> Ahg940017 jgi|Araly1|940017|scaffold_600561.1
Length=999
Score = 311 bits (168), Expect = 1e-83
Identities = 210/231 (91%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 512 AGAATCGGAAGCAGAGGACTCTGTTCCTGAGTTCCCGCCGCTTCAAAAGAGAGATCTTTC 571
||| |||||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 716 AGATTCGGAAGCAGAGGACTCTGTTCTTGAGTTCCCGCCACCTCAAAAGAGAGATCTTTG 775
Query 572 AAAGGTTTTCGGGGAGTTCGGAGAGAAACTCGATCCGTTCTTACATGCTGTAGTCGAAAC 631
| |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 776 GAGGGTTTTCGGGGAATTCGGAGAGAAACTCGATCCGTTCTTACATGTTGTGGTCGAAAC 835
Query 632 GACAATAAGATCTTCAGGGTTAATATACATGTCCTGCGAAGAGCTTGAGAAAGATTCGTT 691
||| || | |||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 836 GACTATTACATCTTCAGGGCTAATGTACATGTCCTGCAAAGAGCTTGAGAAAGATTCGTT 895
Query 692 GACTCTTTCTAACGAAATTTTTAAAGTTCCGGTTTTTGCAATTGGTCCGTT 742
||||||||||||||||||||| |||||||| | ||||| |||||||||||
Sbjct 896 GACTCTTTCTAACGAAATTTTCAAAGTTCCAATCTTTGCGATTGGTCCGTT 946
> Ahg487389 jgi|Araly1|487389|fgenesh2_kg.6__523__AT5G05900.1
Length=1356
Score = 226 bits (122), Expect = 4e-58
Identities = 178/205 (87%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 44 GGAGAAGAGAAATGGTCTGCGTGTGATTCTCTTCCCTCTTCCATTACAAGGTTGCATCAA 103
||| ||||| ||||| || || |||||||| || || |||||||||||||| ||||||||
Sbjct 3 GGATAAGAGTAATGGCCTACGAGTGATTCTGTTTCCACTTCCATTACAAGGCTGCATCAA 62
Query 104 CCCTATGCTTCAGCTCGCCAACATCCTTCACGT-AAGAGGCTTCTCCATTACCGTGATCC 162
||| ||| ||||||||||||| ||||| ||| | |||||| |||||||| || |||||||
Sbjct 63 CCCCATGATTCAGCTCGCCAAGATCCTCCAC-TCAAGAGGTTTCTCCATCACTGTGATCC 121
Query 163 ACACGCGCTTCAACGCGCCAAAAGCTTCAAGCCATCCTCTCTTCACTTTCTTACAGATTC 222
|||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
Sbjct 122 ACACGCGCTTCAACGCGCCAAAAGTTTCAAGCCACCCTCTCTTCACCTTCTTACAGAT-C 180
Query 223 CT-GATGGTTTGTCTGAAACGGAGA 246
| |||| ||||||||||| ||||
Sbjct 181 CAAGATGCCTTGTCTGAAACAGAGA 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5