BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05870.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325212 jgi|Araly1|325212|fgenesh1_pm.C_scaffold_6000432 2041 0.0
Ahg916479 jgi|Araly1|916479|Al_scaffold_0008_1230 418 6e-116
> Ahg325212 jgi|Araly1|325212|fgenesh1_pm.C_scaffold_6000432
Length=1380
Score = 2041 bits (1105), Expect = 0.0
Identities = 1286/1374 (94%), Gaps = 10/1374 (1%)
Strand=Plus/Plus
Query 45 atggagaagagaaacgagagaCAAGTGATTCTTTTTCCTCTACCATTACAAGGTTGCATA 104
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAGAAACGAGAGACAAGTGATTCTCTTTCCTCTACCATTACAAGGTTGCATA 60
Query 105 AACCCTATGCTTCAGCTAGCAAAGATCCTTTACTCAAGAGGTTTTTCGATCACCATCATC 164
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 61 AACCCTATGCTCCAGCTAGCAAAGATCCTTTATTCAAGAGGTTTCTCGATCACCATCATT 120
Query 165 CACACGCGCTTCAACGCGCCCAAATCTTCAGACCATCCTCTCTTCACTTTCTTACAAATC 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACACGCGCTTCAACGCGCCCAAATCTTCAGACCATCCTCTCTTCACTTTCTTACAAATC 180
Query 225 -CGCGACGGCTTGTCTGAATCTCAGACTCAATCTCGTGATCTTTTGCTTCAACTCACGCT 283
| |||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TC-CGACGGATTGTCCGAATCTCAGACTCAATCTCGTGATGTTTTGCTTCAACTCACGCT 239
Query 284 TCTCAACAACAATTGTC-AGATCCCATTTCGAGAGTGTTTGGCTAAACTCATTAAACCTA 342
||||||||||||||| | ||| ||||||||||||||||||||||||| |||| |||||||
Sbjct 240 TCTCAACAACAATTG-CGAGAACCCATTTCGAGAGTGTTTGGCTAAAGTCATCAAACCTA 298
Query 343 GTTCAGATTCAGGAACAGAGGATAGGAAAATTAGCTGTGTGATCGATGATTCCGGTTGGG 402
|||||||||||||||||||||| ||||| ||||||||| ||||||||||||| || ||||
Sbjct 299 GTTCAGATTCAGGAACAGAGGAAAGGAAGATTAGCTGTTTGATCGATGATTCTGGCTGGG 358
Query 403 TTTTCACACAATCCGTGGCGGAGAGTTTTAATCTTCCTCGATTTGTCCTCTGTGCTTATA 462
||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||
Sbjct 359 TTTTCACACAATCCGTGTCGGAGAGTTTCAATCTTCCGAGATTTGTCCTATGTGCTTATA 418
Query 463 AGTTCTCTTTCTTTCTCGGACATTTTCTTGTTCCTCAGATTCGTCGTGAAGGGTTTCTTC 522
| ||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 419 AATTCTCATTCTTTCTTGGACATCTGCTTGTTCCTCAGATTCGTCGTGAAGGGTTTCTTC 478
Query 523 CAGTACCAGATTCGGAGGCAGATGATCTAGTTCCTGAGTTTCCACCGCTTCGAAAGAAAG 582
|||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 479 CAGTACCAGATTCGGAAGCAGAGGATCTCGTTCATGAGTTTCCACCGCTTCGAAAGAAAG 538
Query 583 ATCTTTCGAGAATTATGGGAACCAGCGCTCAGAGTAAGCCTCTAGATGCTTACTTGCTTA 642
||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||| ||
Sbjct 539 ATCTTTCGAGAATAATGGGAACCAGCGCTCAGAGTGAGCCTCTCGATTCTTACTTGCATA 598
Query 643 AGATACTCGACGCGACGAAGCCAGCTTCAGGGATTATAGTTATGTCCTGCAAAGAGCTTG 702
||||| |||| ||||||||||||||||||||| | ||||||||||| ||| |||||||||
Sbjct 599 AGATAATCGAAGCGACGAAGCCAGCTTCAGGGCTCATAGTTATGTCATGCGAAGAGCTTG 658
Query 703 ACCAT-GATTCACTTGCTGAGTCCAACAAAGTTTTCAGCATTCCGATATTTCCCATTGGC 761
||| | ||||||||| |||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 659 ACC-TAGATTCACTTACTGAGTCCAACAAAGTCTTCAGCTTTCCGATATTCCCCATTGGC 717
Query 762 CCTTTTCACATTCATGACGTCCCAGCCTCGTCTAGCAGCTTGTTAGAACCGGACCAGAGT 821
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 CCATTTCACATCCATGACGTGCCAGCCTCGTCTAGCAGCTTGTTAGAACCGGACCAGAGT 777
Query 822 TGCATTCCATGGTTAGATATGCGTGAAACGAGATCAGTAGTCTACGTGAGCTTAGGGAGC 881
||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 778 TGCATTCCATGGTTAGATAAGCATGAAACGAGATCAGTAATCTACGTGAGCTTAGGGAGC 837
Query 882 ATTGCGAGTCTTAACGAGTCTGACTTCTTGGAGATTGCTTGTGGACTAAGAAACACCAAC 941
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 ATTGCGAGTCTTAACGAGTCTGACTTCTTGGAGATTGCTTGTGGACTAAGAAACACTAAC 897
Query 942 CAATCCTTCTTGTGGGTTGTCCGGCCTGGTTCAGTCCATGGCAGAGATTGGATCGAATCA 1001
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 898 CAATCCTTCTTGTGGGTTGTCCGGCCTGGTTCAGTCCACGGCAGAGATTGGATCGAATCG 957
Query 1002 TTACCTTCAGGGTTCATGGAAAGTCTCGATGGTAAAGGAAAGATAGTGAGATGGGCACCG 1061
||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 958 TTACCCTCAGGGTTCATGGAAAGTCTCGAGGGTAAGGGAAAGATAGTGAAATGGGCACCG 1017
Query 1062 CAGCTAGACGTTCTTGCGCATAGAGCCACGGGAGGGTTTTTGACTCATAATGGATGGAAC 1121
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 CAGCTAGATGTTCTTGCGCATAGAGCCACGGGAGGGTTTTTGACGCATAATGGATGGAAC 1077
Query 1122 TCGACATTAGAGAGTATATGCGAAGGAGTACCTATGATCTGCTTGCCTTGTAAGTGGGAC 1181
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1078 TCGACGCTAGAGAGTATATGCGAAGGAGTACCTATGATCTGCTTGCCTTTTGTGTGGGAC 1137
Query 1182 CAATTTGTAAACGCGAGAT-TCATAAGCGAAGTTTGGAGGGTTGGGATTCACTTGGAAGG 1240
||||||||||||||||||| | || ||||||||||||||||||||||| ||||| |||||
Sbjct 1138 CAATTTGTAAACGCGAGATAT-ATCAGCGAAGTTTGGAGGGTTGGGATACACTTAGAAGG 1196
Query 1241 TCGGATAGAGCGAAGAGAAATCGAGAGAGCTGTTATAAGACTAATGGTTGAGTCGAAAGG 1300
|||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1197 TCGGATAGAGAGAAGAGAGATCGAGAGAGCTGTGATAAGACTAATGGTTGAGTCGGAAGG 1256
Query 1301 AGAAGA-GATTCGAGGTAGAATCAAAGTCTTGCGAGACGAAGTAAGAAGGTCAGTTAAAC 1359
||| || |||||||| ||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1257 AGA-GAAGATTCGAGATAGAATCAAAGTCTTGCGAGATGAAGTAAGAAGATCGGTTAAAC 1315
Query 1360 AAGGAGGTTCGTCATATCGATCTTTAGATGAGTTGGTTGATCGTATATCAATCA 1413
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AAGGAGGTTCGGCATCTCGATCTTTAGATGAGTTGGTTGATCGTATATCAATCA 1369
> Ahg916479 jgi|Araly1|916479|Al_scaffold_0008_1230
Length=300
Score = 418 bits (226), Expect = 6e-116
Identities = 265/284 (93%), Gaps = 2/284 (1%)
Strand=Plus/Plus
Query 61 agagaCAAGTGATTCTTTTTCCTCTACCATTACAAGGTTGCATAAACCCTATGCTTCAGC 120
|||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 11 AGAGTCAATTGATTCTCTTCCCTCTACCATTACAAGGTTGCATAAACCCTATGCTTCAGC 70
Query 121 TAGCAAAGATCCTTTACTCAAGAGGTTTTTCGATCACCATCATCCACACGCGCTTCAACG 180
|||||||||||||||| |||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct 71 TAGCAAAGATCCTTTATTCAAGAAGTTTCTCGATCACTATCATCCACACGCGCTTTAACG 130
Query 181 CGCCCAAATCTTCAGACCATCCTCTCTTCACTTTCTTACAAATCCGCGACGGCTTGTCTG 240
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 131 CGGAGAAATCTTCAGACCATCCTCTCTTCACTTTCTTACAAATCCCCGACGGCTTGTCCG 190
Query 241 AATCTCAGACTCAATCTCGTGATCTTTTGCTTCAACTCACGCTTCTCAACAACAATTGTC 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 191 AATCTCAGACTCAATCTCGTGATGTTTTGCTTCAACTCACGCTTCTCAACAACAATTG-C 249
Query 301 -AGATCCCATTTCGAGAGTGTTTGGCTAAACTCATTAAACCTAG 343
||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 250 GAGAACCCATTTCGAGAGTGTTTGGCTAAACTCATCAAACCTAG 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5