BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05890.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487387 jgi|Araly1|487387|fgenesh2_kg.6__521__AT5G05890.1 2305 0.0
Ahg487389 jgi|Araly1|487389|fgenesh2_kg.6__523__AT5G05900.1 1363 0.0
Ahg487386 jgi|Araly1|487386|fgenesh2_kg.6__520__AT5G05860.1 460 1e-128
Ahg940017 jgi|Araly1|940017|scaffold_600561.1 412 3e-114
> Ahg487387 jgi|Araly1|487387|fgenesh2_kg.6__521__AT5G05890.1
Length=1470
Score = 2305 bits (1248), Expect = 0.0
Identities = 1401/1475 (95%), Gaps = 10/1475 (1%)
Strand=Plus/Plus
Query 1 ACAAGAAAGAAGAAGAAAGCTTCAATGGAGAAGAGTAATGGCCTTCGAGTGATTCTGTTT 60
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ACAAGAAAGAAGGAGAAAGCTTCAATGGAGAAGAGTAATGGCCTGCGAGTGATTCTGTTT 60
Query 61 CCACTTCCATTACAAGGCTGCATCAACCCCATGATTCAGCTCGCCAAGATCCTCCACTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACTTCCATTACAAGGCTGCATCAACCCCATGATTCAGCTCGCCAAGATCCTCCACTCA 120
Query 121 AGAGGTTTCTCCATCACTGTGATCCACACGTGCTTCAACGCGCCAAAAGCTTCAAGCCAT 180
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 121 AGAGGTTTCTCAATCACTGTGATCCACACGTCCTTCAACGCGCCAAAAGCTTCAAACCAT 180
Query 181 CCTCTCTTCACCTTCTTAGAGATCCCAGATGGCTTGTCCGAAACAGAGAAAAGAACTAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CCTCTCTTCACCTTCTTAGAGATCCCAGATGGCTTGTCCGAAACAGAGAAAAGAAGTAAC 240
Query 241 AATACCAAACTTCTCCTAACGCTTCTCAACCGGAACTGTGAGTCTCCGTTTCGTGAATGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 AATACCAAACTTCTCCTAACGCTTCTCAACCGGAACTGTGAGTCTCCGTTTCGTGACTGT 300
Query 301 TTGAGTAAACTGTTGCAGTCTGCAGATTCAGAAACAGGGGAAGAGAAACAGAGGATTAGC 360
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 301 TTGACTAAACTGTTGCAATCTGCAGATTCCGAAACAGGGGAAGAGAAACAGAGGATTTGC 360
Query 361 TGTTTGATCGCTGATTCTGGATGGATGTTCACACAACCCATTGCTCAGAGTTTGAAACTC 420
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTTGATCAATGATTCTGGATGGATGTTCACACAACCCATTGCTCAGAGTTTGAAACTC 420
Query 421 CCAATATTGGTCCTCAGTGTGTTTACAGTCTCCTTCTTTCGCTGCCAATTTGTTCTTCCT 480
|| | |||||| || |||| ||||||||||||||||| |||| ||||||||||||| |||
Sbjct 421 CCGAGATTGGTACTTAGTGGGTTTACAGTCTCCTTCTATCGCAGCCAATTTGTTCTCCCT 480
Query 481 AAGCTTCGGCGTGAAGTGTATCTTCCACTTCAAGATTCAGAACAGGAGGATCTAGTTCAA 540
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 AAGCTCCGGCGTGAAGTGTATCTTCCACTCCAAGATTCAGAACAGGAGGATCTAGTTCAG 540
Query 541 GAGTTTCCGCCGCTTCGAAAGAAGGATATTGTACGTATTCTTGATGTAGAAACAGATATA 600
|||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||
Sbjct 541 GAGTTTCCGCCGCTTCGAAAGAAGGATATTTTAAGGATTCTTGATGTAGAAACAGAGATA 600
Query 601 CTAGATCCATTCTTGGACAAAGTTCT-ACAAATGACAAAGGCGTCTTCAGGTCTTATATT 659
||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 601 TTAGATCCATTCTTGGACAAAGTTTTGA-AAATGACAAAGGCGTCTTCAGGTCTTATATT 659
Query 660 CATGTCATGTGAAGAGTTGGACCACGACTCAGTGAGTCAGGCACGTGAA-GATTTCAAAA 718
|||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 660 CATGTCATGTGAAGAGTTGGACCAAGACTCAGTGAGTCAGGCACGT-AACGATTTCAAAA 718
Query 719 TTCCTATCTTTGGGATTGGACCATCTCACAGCCACTTTCCAGCTACCTCTAGTAGCTTGT 778
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 719 TTCCCATCTTTGGGATTGGACCATCTCACAGCCACTTTCCAGCTTCGTCTAGTAGCTTGT 778
Query 779 CCACACCCGACGAGACTTGCATTCCATGGTTAGACAAACAAGAAGACAAATCCGTGATTT 838
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 779 CCACACCCGACGAGACTTGCATTCCATGGTTAGACAAACAAGCAGACAGATCCGTGATTT 838
Query 839 ACGTCAGTTACGGGAGCATCGTGACCATCAGCGAATCAGATTTAATAGAGATTGCTTGGG 898
|||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 839 ACGTGAGTTACGGGAGCATCGTGACTATCAGCGAATCAGAGTTAATGGAGATTGCTTGGG 898
Query 899 GTCTAAGAAACAGCGACCAACCCTTCTTGTTGGTCGTACGGGTTGGTTCAGTCCGTGGCA 958
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 GTCTAAGAAACAGCGACCAACCTTTCTTGTTGGTCGTACGGGTTGGTTCAGTCCGTGGCA 958
Query 959 GAGAATGGATCGAGACAATCCCGGAAGAGATCATGGAAAAGCTTAATGAGAAGGGAAAGA 1018
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 959 CAGAATGGATCGAGACAATCCCGGAAGAGATCATCGCAAAGCTTAATGAGAAGGGAAAGA 1018
Query 1019 TAGTGAAATGGGCTCCGCAACAAGACGTTCTAAAGCATCGAGCCATTGGGGGATTCCTGA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 TAGTGAAATGGGCTCCGCAACAAGACGTTCTAAAGCATCGAGCCATTGGGGGATTCTTGA 1078
Query 1079 CACATAATGGTTGGAGCTCGACTGTTGAGAGTGTTTGTGAAGCAGTCCCTATGATCTGTT 1138
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1079 CACATAATGGTTGGAGCTCGACGGTTGAGAGTGTTTGTGAAGCCGTCCCTATGATCTGTT 1138
Query 1139 TGCCTTTTCGTTGGGACCAAATGCTAAATGCAAGATTTGTTAGCGATGTATGGATGGTCG 1198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGCCTTTCCGTTGGGACCAAATGCTAAATGCAAGATTTGTTAGCGATGTATGGATGGTCG 1198
Query 1199 GGATAAACCTAGAGGATCGGGTTGAAAGGAATGAGATCGAGGGAGCGATAAGGAGATTAT 1258
| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1199 GTATAAATCTAGAGGATCGGGTTGAGAGGAATGAGATCGAGAGAGCGATAAGGAGATTAT 1258
Query 1259 TGGTGGAACCTGAAGGAGAAGCCATCCGAGAGAGGATAGAACATCTTAAGGAGAAAGTAG 1318
|||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||
Sbjct 1259 TGGTGGAACCTGAAGGAGAAGCCATCCGAGAGAGGATACAACTTCTTAAAGAAAAAGTAG 1318
Query 1319 -GACGATCGTTTCA-ACAAAACGGTTCCGCATATCAATCGT-TACAAAATTTGATTGATT 1375
|| ||||||| | |||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 1319 AGA-GATCGTT-CGGACAAAACGGTTCGGCATATCAATC-TCTACAAAATTTGATTGATT 1375
Query 1376 ATATATCATCTTTTTAGCCACTGACATGTTGTTTCTTTGTGTTTTAAGTTTTTCAACCGA 1435
||||||||||||| |||||| ||||||||||||| |||||||||| ||||| ||||||||
Sbjct 1376 ATATATCATCTTTCTAGCCATTGACATGTTGTTTGTTTGTGTTTTTAGTTTCTCAACCGA 1435
Query 1436 TAAATTGTTTGTGTATCAGAAATTTCTTCCTTTGT 1470
||||||||||||||||||||||| |||||||||||
Sbjct 1436 TAAATTGTTTGTGTATCAGAAATATCTTCCTTTGT 1470
> Ahg487389 jgi|Araly1|487389|fgenesh2_kg.6__523__AT5G05900.1
Length=1356
Score = 1363 bits (738), Expect = 0.0
Identities = 1184/1392 (85%), Gaps = 60/1392 (4%)
Strand=Plus/Plus
Query 25 ATGGAGAAGAGTAATGGCCTTCGAGTGATTCTGTTTCCACTTCCATTACAAGGCTGCATC 84
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAAGAGTAATGGCCTACGAGTGATTCTGTTTCCACTTCCATTACAAGGCTGCATC 60
Query 85 AACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAGGTTTCTCCATCACTGTGATC 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAGGTTTCTCCATCACTGTGATC 120
Query 145 CACACGTGCTTCAACGCGCCAAAAGCTTCAAGCCATCCTCTCTTCACCTTCTTAGAGATC 204
|||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 121 CACACGCGCTTCAACGCGCCAAAAGTTTCAAGCCACCCTCTCTTCACCTTCTTACAGATC 180
Query 205 CCAGATGGCTTGTCCGAAACAGAGAAAAGAACTAACAATACCAAACTTCTCCTAACGCTT 264
| ||||| |||||| |||||||||| ||| ||| || || || ||| || |||||||||
Sbjct 181 CAAGATGCCTTGTCTGAAACAGAGACAAGCACTCACGATGTCACACTGCTACTAACGCTT 240
Query 265 CTCAACCGGAA-CTGTGAGTCTCCGTTTCGTGAATGTTTGAGTAAACTGTTGCAGTCTGC 323
|||||||| || ||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 241 CTCAACCG-AAGCTGTGAGTCTCCGTTTCGTGAATGTTTGACTAAACTTTTGCAATCTGC 299
Query 324 AGATTCAGAAACAGGGGAAGAGAAACAGAGGA-TTAGCTGTTTGATCGC-TGATTCTGGA 381
||||||| |||||||||||||||||||||||| || ||| ||||||| | |||||||||
Sbjct 300 AGATTCAAAAACAGGGGAAGAGAAACAGAGGAATT-GCTCTTTGATC-CATGATTCTGGT 357
Query 382 TGGATGTTCACACAACCCATTGCTCAGAGTTTGAAACTCCCAATATTGGTCCTCAGTGTG 441
||||| |||||||||||||||||| |||||||||| ||||| | ||||||||| |
Sbjct 358 TGGATCTTCACACAACCCATTGCTAAGAGTTTGAATCTCCCGAGATTGGTCCTTAACACC 417
Query 442 TTTACAGTCTCCTTCTTTCGCTG-CCAATTTGTTCTTCCTAAGCTTCGGCGTGAAGTGTA 500
| || |||||||| |||||| | ||| |||||||||||| |||| ||||||||| ||||
Sbjct 418 TATAAAGTCTCCTCCTTTCGG-GACCATTTTGTTCTTCCTCAGCTCCGGCGTGAAATGTA 476
Query 501 TCTTCCACTT-CAAGATTCAGAACAGGA-G--GATCTAGTTCAAGAGTTTCCGCCGCTTC 556
||||||| || |||||||||||||| || | |||| |||||| |||||||| |||||||
Sbjct 477 TCTTCCA-TTACAAGATTCAGAACAAGATGATGATCCAGTTCAGGAGTTTCCACCGCTTC 535
Query 557 GAAAGAAGGATATTGTACGTATTCTTGATGTAGAAACAGATATACTAGATCCATTCTTGG 616
|||||| ||| || ||| ||||||||| |||||| || |||||||| | | | |
Sbjct 536 TAAAGAAAGATCTTATACAAATTCTTGATAAAGAAACGGAGATACTAGA-C--T-CGTAC 591
Query 617 ACAAAG-T--TCTAC-AAATGACAAAGGCGTCTTCAGGTCTTATATTC--ATG-TCATGT 669
|||||| | | | ||| |||||| |||||||||||||||||||| || ||||||
Sbjct 592 ACAAAGATGATTTTGGAAACGACAAAAGCGTCTTCAGGTCTTATATTTGTATCCTCATGT 651
Query 670 GAAGAGTTGGACCACGACTCAGTGAGTCAGGCACGTGAAGATTT-CAAAATTCCTATCTT 728
|||||||||||||| |||||| ||||||| |||||||||||||| ||| | || |||||
Sbjct 652 GAAGAGTTGGACCAAGACTCATTGAGTCAAGCACGTGAAGATTTTCAAG-TCCCGATCTT 710
Query 729 TGGGATTGGACCATCTCACAGCCACTTTCCAG-CTACCTCTAGTAGCTTGTCCACACCCG 787
| ||| ||||| ||||||||| |||| |||| || | ||||||||||||| |||| |
Sbjct 711 TACGATAGGACCTTCTCACAGCTACTTCCCAGGCT-CATCTAGTAGCTTGTTCACAGTGG 769
Query 788 ACGAGACTTGCATTCCATGGTTAGACAAACAAGAAGACAAATCCGTGATTTACGTCAGTT 847
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 770 ACGACACTTGCATTCCATGGTTAGACAAGCAAGAAGACAAATCCGTGATTTACGTGAGTT 829
Query 848 ACGGGAGCATCGTGACCATCAGCGAATCAGATTTAATAGAGATTGCTTGGGGTCTAAGAA 907
|||||||||| |||||| |||||| |||| || || ||||||||||||||||||||||
Sbjct 830 TCGGGAGCATCACGACCATTAGCGAAGCAGAGTTCATGGAGATTGCTTGGGGTCTAAGAA 889
Query 908 ACAGCGACCAACCCTTCTTGTTGGTCGTACGGGTTGGTTCAGTCCGTGGCAGAGAATGGA 967
||||| ||||||||||||||| |||||||||||||| ||| || || || |||
Sbjct 890 ACAGCAACCAACCCTTCTTGTGGGTCGTACGGGTTGATTCGGTA-GTC-CA-----TGG- 941
Query 968 TCGAGACAATCCCGGAAGAGATC-ATGGAAAAGCTTAATGAGAAGGGAAAGATAGTGAAA 1026
| | || | ||| |||| ||| || ||||| ||||||| ||||| ||||||||
Sbjct 942 -C-A--CA-----GAAAG-GATCGATG-AACAGCTTCATGAGAAAGGAAAAATAGTGAAT 990
Query 1027 TGGGCTCCGCAACAAGACGTTCTAAAGCATCGAGCCATTGGGGGATTCCTGACACATAAT 1086
||||| || |||||||| ||||||||||||||||||||||| |||||| |||| || |||
Sbjct 991 TGGGCCCCACAACAAGAGGTTCTAAAGCATCGAGCCATTGGAGGATTCTTGACCCACAAT 1050
Query 1087 GGTTGGAGCTCGACTGTTGAGAGTGTTTGTGAAG-CAGTCCCTATGATCTGTTTGCCTTT 1145
||||||| |||||| ||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1051 GGTTGGAACTCGACGGTTGAGAGTGTTTTTGAAGGC-GTCCCTATGATCTGTTTGCCTTT 1109
Query 1146 TCGT-TGGGACCAAATGCTAAATGCAAGATTTGTTAGC-GATGTATGGATGGTCGGGATA 1203
| | ||||||||| ||||||||||||||||||||| | || ||||||||||| ||| |
Sbjct 1110 T-GAATGGGACCAATTGCTAAATGCAAGATTTGTTA-CTGACGTATGGATGGTTGGGCTG 1167
Query 1204 AACCTAGAGGATCGGGTTGAAAGGAATGAGATCGAGGGAGCGATAAGGAGATTATTGGT- 1262
| ||||||| |||| |||| ||||||| ||| ||||||| |||||| |||||||| |
Sbjct 1168 CATCTAGAGGGTCGGATTGAGAGGAATGTGATTGAGGGAGTGATAAGAAGATTATTT-TC 1226
Query 1263 GGAACCTGAAGGAGAAGCCATCCGAGAGAGGATAGAACATCTTAAGGAGAAAGTAGGACG 1322
|||| |||||||| |||| |||||||||||||| |||| |||||||||||| ||| || |
Sbjct 1227 GGAAGCTGAAGGAAAAGCAATCCGAGAGAGGATGGAACTTCTTAAGGAGAAGGTAAGAAG 1286
Query 1323 ATC-GTTTCAAC-AAAACGGTTCCGCATATCAATCGTTACAAAATTTGATTGATTATATA 1380
||| ||| ||| |||| || || |||||| |||||||||| |||||||||||||||||
Sbjct 1287 ATCAGTTA-AACCAAAA-GGCTCTTCATATCGATCGTTACAACATTTGATTGATTATATA 1344
Query 1381 TCATCTTTTTAG 1392
|||||||| |||
Sbjct 1345 TCATCTTTCTAG 1356
> Ahg487386 jgi|Araly1|487386|fgenesh2_kg.6__520__AT5G05860.1
Length=1490
Score = 460 bits (249), Expect = 1e-128
Identities = 980/1318 (74%), Gaps = 109/1318 (8%)
Strand=Plus/Plus
Query 27 GGAGAAGAGTAATGGCCTTCGAGTGATTCTGTTTCCACTTCCATTACAAGGCTGCATCAA 86
||||||||| ||||| || ||||||||||| || || |||||||||||||| ||||| ||
Sbjct 37 GGAGAAGAGAAATGGTCTGCGAGTGATTCTCTTCCCTCTTCCATTACAAGGTTGCATAAA 96
Query 87 CCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAGGTTTCTCCATCACTGTGATCCA 146
||| ||||||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||
Sbjct 97 CCCTATGATTCAGCTTGCCAACATCCTTCACTCGAGAGGTTTCTCCATTACCGTGATCCA 156
Query 147 CACGTGCTTCAACGCGCCAAAAGCTTCAAGCCATCCTCTCTTCACCTTCTTAGAGATCCC 206
|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 157 CACGCGCTTCAACGCGCCAAAAGCTTCAAGCCATCCTCTCTTCACTTTCTTACAGATTTC 216
Query 207 AGATGGCTTGTCCGAAACAGAGA--AAAGAACTAACAATACCAAACTTCTCCTAACGCTT 264
||||||||||| ||||| ||| ||||| | | || ||| | || | |
Sbjct 217 TGATGGCTTGTCTGAAACTCAGACTAAAGA--TGATGTTATGT--CTT-TGCTTGCACAA 271
Query 265 CTCAACCGGAACTG-TGAGTCTCCGTTTCGTGAATGTTTGAGTAAACTGTTGCAGTCTGC 323
||||| ||| | |||||||||||||||||| || ||| || ||||||||| | ||
Sbjct 272 ATCAACATTAAC-GCTGAGTCTCCGTTTCGTGATTGCTTGCGTGAACTGTTGC--T-TG- 326
Query 324 AGATTCAGAAACAGGGGAAGAGAAACAGAGGATTAGCTGTTTGATCGCTGATTCTGGATG 383
| || | |||| | | |||| | || |||| |||||||||| ||||| ||||||
Sbjct 327 A-AT-C-GAAAGAATC-A-GAGA----G-GG-TTAGTTGTTTGATCGATGATTGTGGATG 375
Query 384 GATGTTCACACAACCCATTGCTCAGAGTTTGAAACTCCCAATA-TTGGTCCTCAGTG-TG 441
| | ||||||||| | |||| |||||||||| || |||| ||| || || || |
Sbjct 376 GCTCTTCACACAAACTGTTGCAGAGAGTTTGAATCTTCCAAGGCTTGTTC-TCTGTACT- 433
Query 442 TTTACAGTCTCCTTCTTTCGCTGCCAATTTGT-TCTTCCTAAGCTTCGGCGTG--AA-GT 497
|||| || | | ||||| | ||| || | |||||| | ||| || || |
Sbjct 434 TTTAAAGCCACTTTCTT-CAATGCTTATCCGAGTCTTCC-A--CTTATCCGAACCAAAG- 488
Query 498 G-TATCTTCCACTT-CAAGATTCAGAA-CAGGAGGA-TCTAGTTCAAGAGTTTCCGCCGC 553
| ||||||||| || || ||||| ||| ||| |||| ||| |||| ||||| |||||||
Sbjct 489 GATATCTTCCAGTTTCA-GATTCGGAAGCAG-AGGACTCT-GTTCCTGAGTTCCCGCCGC 545
Query 554 TTCGAAAGA-AGGATATTGT-AC-G-TATTCTTG-A-TGTAGAAACAGATATACTAGATC 607
||| ||||| || || || | | | | ||| | | | | | | ||| | ||| ||||
Sbjct 546 TTCAAAAGAGAG-ATCTT-TCAAAGGTTTTCGGGGAAT-TCGGAG-AGA-A-ACTTGATC 599
Query 608 CATTCTTGGACAAAGTTCTA--C-AAATGACAAAG-GCGTCTTCAGGTCTTATATTCATG 663
| ||||| ||| | | || | ||| ||||| | || |||||||| || |||||||||
Sbjct 600 CGTTCTT--ACAT-GCTGTAGTCGAAACGACAATGAGC-TCTTCAGGGCTAATATTCATG 655
Query 664 TCATGTGAAGAG-TTG-GACCACGACTCAGTGAGTCAG-GC-A-CGTGAAGATTT-CAAA 717
|| || |||||| ||| || | || ||| ||| | | || | || || |||| | ||
Sbjct 656 TCTTGCGAAGAGCTTGAGAA-A-GATTCATTGACT-ATTGCTAACG--AA-ATTTTCGAA 709
Query 718 ATTCCTATCTTTGGGATTGGACCATCTCACAGCCACTT-TCCAGCTACCTCTAGTAGCTT 776
|||| ||||||| |||||| || | ||||||| |||| || ||| | || || |||||
Sbjct 710 GTTCCCATCTTTGCGATTGGTCCGTTTCACAGCTACTTCTCT-GCTTCATCAAGCAGCTT 768
Query 777 GTCCACACCCGACGAGACTTGCATTCCATGGTTAGACAAACAAGAAG-ACAAATCCGTGA 835
| ||||| ||||||||||||||||| ||||||| || ||| ||| |||||||||| |
Sbjct 769 ATTCACACAGGACGAGACTTGCATTCCTTGGTTAGGTAATCAA-AAGGACAAATCCGTTA 827
Query 836 TTTACGTCAGT-TACGGGAGCATCGTGACCATCAGCG-A-ATCAGATTTAATAGAGATTG 892
| ||||| ||| || || ||| | |||| || | || | | |||| || | |||||||
Sbjct 828 TCTACGTGAGTCTA-GGAAGCGTTGTGAATATTA-CGGAGA-CAGAGTTCTTGGAGATTG 884
Query 893 CTTGGGGTCTAAGAAACAGCGACCAACCCTTCTTGTTGGTCGTACGGGTTGGTTCAGTCC 952
|||| ||| |||| || ||| | || | ||||||| ||| ||||| |||||||| |
Sbjct 885 CTTGTGGTTTAAGCAATAGCAAACAGTCTTTCTTGTGGGTAGTACGACCCGGTTCAGTAC 944
Query 953 GT-GGCAGAGAA-TGGATCGAGACAA-TCCCGGAAGAGATCATGGAAAAGC-TT-AATGA 1007
| ||| | ||| |||||||| || || | |||| | || | |||| | || || ||
Sbjct 945 -TCGGC-GCGAAGTGGATCGA-ACCGCTCTCTGAAGGGCTCGTT-AAAATCCTTGAA-GA 999
Query 1008 GAAGGGAAAGATAGTGAAATGGGCTCCGCAACAAGACGTTCTAAAGCATCGAGCCATTGG 1067
||| |||||||| ||||||||||| || ||||| || ||||| |||||||||||||||
Sbjct 1000 GAAAGGAAAGATTGTGAAATGGGCACCACAACAGGAGGTTCTTGCGCATCGAGCCATTGG 1059
Query 1068 -GGGATTCCTGACACATAATGGTTGGAGCTCGACTGTT-GAGAGTGTTTGTGAAGCAGTC 1125
||| || ||||||| |||||||||| ||| || | | |||||| | || |||| ||
Sbjct 1060 AGGGTTTT-TGACACACAATGGTTGGAACTCAAC-GCTAGAGAGTATATGCGAAGGGGTT 1117
Query 1126 CCTATGATCTGTTTGCCTTTTCGTTGGGACCAAATGCTAAATGCAAGATTTGTTAGCGAT 1185
||||||||||| || || ||||||| |||||||| ||| |||||||||| ||||||
Sbjct 1118 CCTATGATCTGCTTACCAGGAGGTTGGGATCAAATGCTGAATTCAAGATTTGTGAGCGAT 1177
Query 1186 GTATGGATGGTCGGGATAAACCTAGA-GGATCGGGTTGAA-AGGAATGAGATCGAGGGAG 1243
| |||| |||||| || | | || || |||| ||||| | || ||||| ||| ||
Sbjct 1178 ATTTGGAAGGTCGGAATTCATTTGGAAGG-TCGGATTGAACAA-AAGGAGATTGAGAAAG 1235
Query 1244 C-GATAAGGA-GATTATTGGTGGAACCTGAAGGAGAAGCCATCCGAGAGAGGATAGAA 1299
| | | |||| | ||| ||| |||| |||||||||| || || |||||||| |||
Sbjct 1236 CTG-TGAGGATG-TTAATGGAGGAAAATGAAGGAGAAAAGATTCGTGAGAGGAT-GAA 1290
> Ahg940017 jgi|Araly1|940017|scaffold_600561.1
Length=999
Score = 412 bits (223), Expect = 3e-114
Identities = 286/315 (91%), Gaps = 9/315 (3%)
Strand=Plus/Plus
Query 200 AGATCCCAGATGGCTTGTCCGAAACAGAGAAAAGAACTAACAATACCAAACTTCTCCTAA 259
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 97 AGATCCCAGATGGCTTGTACGAAACAGAGAAAAGAACTAACAATACCAAACTTCTCCTAA 156
Query 260 CGCTTCTCAACCGGAACTGTGAGTCTCCGTTTCGTGAATGTTTGAGTAAACTGTTGCAGT 319
| ||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 157 CACTTATCAACCGGAACTGTGAGTCTCCGTTTCGTGACTGTTTGACTAAACCGTTGCAGT 216
Query 320 CTGCAGATTCAGAAACAGGGGAAGAGAAACAGAGGATTAGCTGTTTGATCGCTGATTCTG 379
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 217 CTGCAGATTCAGAAACAGGGGAAGATAAACAGAGGATTAGCTGTTTGATCGATGATTTTG 276
Query 380 GATGGATGTTCACACAACCCATTGCTCAGAGTTTGAAACTCCCAATATTGGTCCTCAGTG 439
||||||||||| |||||||||||||||| | ||||| | ||| ||| ||||||
Sbjct 277 GATGGATGTTCGCACAACCCATTGCTCA-A--------CTCCCGAGATTAGTCGTCAGTG 327
Query 440 TGTTTACAGTCTCCTTCTTTCGCTGCCAATTTGTTCTTCCTAAGCTTCGGCGTGAAGTGT 499
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 328 AGTTTACAGTCTCCTTCTTTCGAAGCCAATTTGTTCTTCCTAAGCTCCGCCGTGAAGTGT 387
Query 500 ATCTTCCACTTCAAG 514
||||||||| |||||
Sbjct 388 ATCTTCCACCTCAAG 402
Score = 126 bits (68), Expect = 4e-28
Identities = 88/96 (92%), Gaps = 7/96 (7%)
Strand=Plus/Plus
Query 71 TACAAGGCTGCATCAACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAG----G- 125
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Sbjct 1 TACAAGGCTGCATCAACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAGTCAAGA 60
Query 126 --TTTCTCCATCACTGTGATCCACACGTGCTTCAAC 159
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Sbjct 61 GGTTTCTCAATCACTGTGATCCACACGTGCTTCAAC 96
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5