BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05900.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487389 jgi|Araly1|487389|fgenesh2_kg.6__523__AT5G05900.1 2025 0.0
Ahg487387 jgi|Araly1|487387|fgenesh2_kg.6__521__AT5G05890.1 1282 0.0
Ahg940017 jgi|Araly1|940017|scaffold_600561.1 292 3e-78
> Ahg487389 jgi|Araly1|487389|fgenesh2_kg.6__523__AT5G05900.1
Length=1356
Score = 2025 bits (1096), Expect = 0.0
Identities = 1272/1358 (94%), Gaps = 7/1358 (1%)
Strand=Plus/Plus
Query 1 ATGGATAAGAGTAATGGCCTACGAGTGATTCTGTTTCCACTTCCATTACAAGGATGCATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATAAGAGTAATGGCCTACGAGTGATTCTGTTTCCACTTCCATTACAAGGCTGCATC 60
Query 61 AACCCCATGATTCAGCTAGCGAAGATCCTCCACTCAAGAGGTTTCTCCATCACTGTGATC 120
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAGGTTTCTCCATCACTGTGATC 120
Query 121 CACACGCGCTTCAATGCGCCAAAAGCTTCAAACCACCCTCTGTTCACCTTCTTACAGATC 180
|||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 121 CACACGCGCTTCAACGCGCCAAAAGTTTCAAGCCACCCTCTCTTCACCTTCTTACAGATC 180
Query 181 CCAGATGGCTTGTCTGAAACAGAGACAAGAACTCACGATATCACACTTCTCCTAACGCTT 240
| ||||| ||||||||||||||||||||| ||||||||| ||||||| || |||||||||
Sbjct 181 CAAGATGCCTTGTCTGAAACAGAGACAAGCACTCACGATGTCACACTGCTACTAACGCTT 240
Query 241 CTCAACCGAAGCTGTGAGTCTCCATTTCGTGAATGTTTGACTAAACTTTTGCAGTCTGCA 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 241 CTCAACCGAAGCTGTGAGTCTCCGTTTCGTGAATGTTTGACTAAACTTTTGCAATCTGCA 300
Query 301 GATTCAGAAACAGGGGAAGAGAAACAGAGG-ATTAGCTGTTTGATCGATGATTCTGGATG 359
|||||| ||||||||||||||||||||||| ||| ||| ||||||| |||||||||| ||
Sbjct 301 GATTCAAAAACAGGGGAAGAGAAACAGAGGAATT-GCTCTTTGATCCATGATTCTGGTTG 359
Query 360 GATATTCACACAGCCCGTTGCTCAGAGTTTCAATCTCCCGAGATTGGTCCTTAACACCTA 419
||| |||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 360 GATCTTCACACAACCCATTGCTAAGAGTTTGAATCTCCCGAGATTGGTCCTTAACACCTA 419
Query 420 CAAAGTCTCCTTCTTTCGGGACCATTTTGTTCTTCCTCAACTCCGTCGTGAAATGTATCT 479
|||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 420 TAAAGTCTCCTCCTTTCGGGACCATTTTGTTCTTCCTCAGCTCCGGCGTGAAATGTATCT 479
Query 480 TCCATTACAAGATTCAGAACAAGGTGATGATCCAGTTGAGGAGTTTCCACCCCTTCGAAA 539
||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |||
Sbjct 480 TCCATTACAAGATTCAGAACAAGATGATGATCCAGTTCAGGAGTTTCCACCGCTTCTAAA 539
Query 540 GAAAGATCTTTTACAAATTCTTGATCAAGAATCGGAGCA-ACTAGACTCGTACTCCAATA 598
|||||||||| |||||||||||||| ||||| ||||| | ||||||||||||| | || |
Sbjct 540 GAAAGATCTTATACAAATTCTTGATAAAGAAACGGAG-ATACTAGACTCGTACACAAAGA 598
Query 599 TGATTTTGGAAACAACAAAAGCGTCTTCAGGTCTTATATTTGTATCCACATGTGAAGAGT 658
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 TGATTTTGGAAACGACAAAAGCGTCTTCAGGTCTTATATTTGTATCCTCATGTGAAGAGT 658
Query 659 TGGACCAAGACTCACTGAGTCAAGCACGTGAAGATTATCAAGTCCCAATCTTTACGATAG 718
|||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 659 TGGACCAAGACTCATTGAGTCAAGCACGTGAAGATTTTCAAGTCCCGATCTTTACGATAG 718
Query 719 GACCTTCTCATAGCTACTTCCCAGGCTCATCTAGTAGCTTGTTCACAGTGGACGAGACTT 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 GACCTTCTCACAGCTACTTCCCAGGCTCATCTAGTAGCTTGTTCACAGTGGACGACACTT 778
Query 779 GCATTCCATGGTTAGACAAGCAAGAAGACAAATCCGTGATTTACGTGAGTTTTGGGAGCA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 GCATTCCATGGTTAGACAAGCAAGAAGACAAATCCGTGATTTACGTGAGTTTCGGGAGCA 838
Query 839 TCTCGACCATTGGCGAAGCAGAATTCATGGAGATTGCTTGGGCTCTAAGAAACAGCGACC 898
|| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||
Sbjct 839 TCACGACCATTAGCGAAGCAGAGTTCATGGAGATTGCTTGGGGTCTAAGAAACAGCAACC 898
Query 899 AACCGTTCTTGTGGGTCGTACGGGGTGGTTCGGTAGTCCATGGTGCAGAATGGATC---G 955
|||| ||||||||||||||||||| || ||||||||||||||| ||||| ||||| |
Sbjct 899 AACCCTTCTTGTGGGTCGTACGGGTTGATTCGGTAGTCCATGGCACAGAAAGGATCGATG 958
Query 956 AACAGCTTCATGAGAAAGGAAAGATAGTGAATTGGGCCCCACAACAAGAGGTTCTAAAGC 1015
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 AACAGCTTCATGAGAAAGGAAAAATAGTGAATTGGGCCCCACAACAAGAGGTTCTAAAGC 1018
Query 1016 ATCAAGCCATTGGAGGATTCTTGACACACAATGGTTGGAACTCGACGGTTGAGAGTGTTT 1075
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 ATCGAGCCATTGGAGGATTCTTGACCCACAATGGTTGGAACTCGACGGTTGAGAGTGTTT 1078
Query 1076 TTGAAGGCGTCCCTATGATATGTATGCCTTTTGTATGGGACCAATTGCTTAATGCAAGAT 1135
||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||
Sbjct 1079 TTGAAGGCGTCCCTATGATCTGTTTGCCTTTTGAATGGGACCAATTGCTAAATGCAAGAT 1138
Query 1136 TTGTTAGTGATGTATGGATGGTTGGGCTGCATCTAGAGGGTCGGATTGAGAGGAATGTGA 1195
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTGTTACTGACGTATGGATGGTTGGGCTGCATCTAGAGGGTCGGATTGAGAGGAATGTGA 1198
Query 1196 TTGAGGGAATGATAAGAAGATTATTTTCGGAAACTGAAGGAAAAGCGATCCGAGAGAGGA 1255
|||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1199 TTGAGGGAGTGATAAGAAGATTATTTTCGGAAGCTGAAGGAAAAGCAATCCGAGAGAGGA 1258
Query 1256 TGGAAATTCTTAAGGAGAATGTAGGAAGATCCGTTAAACCAAAAGGTTCGGCGTATCGAT 1315
||||| ||||||||||||| ||| ||||||| |||||||||||||| || | |||||||
Sbjct 1259 TGGAACTTCTTAAGGAGAAGGTAAGAAGATCAGTTAAACCAAAAGGCTCTTCATATCGAT 1318
Query 1316 CGTTACAACATTTGATTGATTATATAACATATTTCTAG 1353
|||||||||||||||||||||||||| ||| |||||||
Sbjct 1319 CGTTACAACATTTGATTGATTATATATCATCTTTCTAG 1356
> Ahg487387 jgi|Araly1|487387|fgenesh2_kg.6__521__AT5G05890.1
Length=1470
Score = 1282 bits (694), Expect = 0.0
Identities = 1174/1396 (84%), Gaps = 71/1396 (5%)
Strand=Plus/Plus
Query 1 ATGGATAAGAGTAATGGCCTACGAGTGATTCTGTTTCCACTTCCATTACAAGGATGCATC 60
||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 25 ATGGAGAAGAGTAATGGCCTGCGAGTGATTCTGTTTCCACTTCCATTACAAGGCTGCATC 84
Query 61 AACCCCATGATTCAGCTAGCGAAGATCCTCCACTCAAGAGGTTTCTCCATCACTGTGATC 120
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 85 AACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAGGTTTCTCAATCACTGTGATC 144
Query 121 CACACG-CGCTTCAATGCGCCAAAAGCTTCAAACCACCCTCTGTTCACCTTCTTACAGAT 179
|||||| | |||||| |||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 145 CACACGTC-CTTCAACGCGCCAAAAGCTTCAAACCATCCTCTCTTCACCTTCTTAGAGAT 203
Query 180 CCCAGATGGCTTGTCTGAAACAGAGACAAGAACTCACGATATCACACTTCTCCTAACGCT 239
||||||||||||||| |||||||||| ||||| | || ||| || |||||||||||||||
Sbjct 204 CCCAGATGGCTTGTCCGAAACAGAGAAAAGAAGTAACAATACCAAACTTCTCCTAACGCT 263
Query 240 TCTCAACCG-AAGCTGTGAGTCTCCATTTCGTGAATGTTTGACTAAACTTTTGCAGTCTG 298
||||||||| || |||||||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 264 TCTCAACCGGAA-CTGTGAGTCTCCGTTTCGTGACTGTTTGACTAAACTGTTGCAATCTG 322
Query 299 CAGATTCAGAAACAGGGGAAGAGAAACAGAGGATTAGCTGTTTGATCGATGATTCTGGAT 358
||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 323 CAGATTCCGAAACAGGGGAAGAGAAACAGAGGATTTGCTGTTTGATCAATGATTCTGGAT 382
Query 359 GGATATTCACACAGCCCGTTGCTCAGAGTTTCAATCTCCCGAGATTGGTCCTTAACACCT 418
|||| |||||||| ||| ||||||||||||| || |||||||||||||| |||| |
Sbjct 383 GGATGTTCACACAACCCATTGCTCAGAGTTTGAAACTCCCGAGATTGGTACTTAGTGGGT 442
Query 419 ACAAAGTCTCCTTCTTTCGG-GACCATTTTGTTCTTCCTCAA-CTCCGTCGTGAAATGTA 476
| ||||||||||| ||| | ||| |||||||| ||| || ||||| |||||| ||||
Sbjct 443 TTACAGTCTCCTTCTATCGCAG-CCAATTTGTTCTCCCT-AAGCTCCGGCGTGAAGTGTA 500
Query 477 TCTTCCATTACAAGATTCAGAACAAGGTGATGATCCAGTTGAGGAGTTTCCACCCCTTCG 536
||||||| | |||||||||||||| || | |||| |||| |||||||||| || |||||
Sbjct 501 TCTTCCACTCCAAGATTCAGAACA-GGAG--GATCTAGTTCAGGAGTTTCCGCCGCTTCG 557
Query 537 AAAGAAAGATCTTTTACAA-ATTCTTGATCAAGAATCGGAGCA-ACTAGACTCG-TACTC 593
|||||| ||| ||||| | ||||||||| |||| | ||| | | |||| || | ||
Sbjct 558 AAAGAAGGATATTTTA-AGGATTCTTGATGTAGAAACAGAG-ATATTAGA-TCCATTCTT 614
Query 594 ---CAATATGATTTTGGAAACAACAAAAGCGTCTTCAGGTCTTATATTTGTATCCACATG 650
||| | | ||||| ||| ||||| |||||||||||||||||||| | || | ||
Sbjct 615 GGACAA-A-G-TTTTGAAAATGACAAAGGCGTCTTCAGGTCTTATATTCATGTC-A--TG 668
Query 651 TGAAGAGTTGGACCAAGACTCACTGAGTCAAGCACGTGAA-GATTATCAAG-T-CCCAAT 707
|||||||||||||||||||||| ||||||| |||||| || |||| |||| | |||| |
Sbjct 669 TGAAGAGTTGGACCAAGACTCAGTGAGTCAGGCACGT-AACGATT-TCAAAATTCCCA-T 725
Query 708 CTTTACGATAGGACCTTCTCATAGCTACTTCCCAGGCT-CATCTAGTAGCTTGTTCACAG 766
|||| ||| ||||| ||||| ||| |||| |||| || | ||||||||||||| ||||
Sbjct 726 CTTTGGGATTGGACCATCTCACAGCCACTTTCCAG-CTTCGTCTAGTAGCTTGTCCACAC 784
Query 767 TGGACGAGACTTGCATTCCATGGTTAGACAAGCAAGAAGACAAATCCGTGATTTACGTGA 826
||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 785 CCGACGAGACTTGCATTCCATGGTTAGACAAACAAGCAGACAGATCCGTGATTTACGTGA 844
Query 827 GTTTTGGGAGCATC-TCGACCATTGGCGAAGCAGAATTCATGGAGATTGCTTGGGCTCTA 885
||| ||||||||| | ||| || ||||| |||| || |||||||||||||||| ||||
Sbjct 845 GTTACGGGAGCATCGT-GACTATCAGCGAATCAGAGTTAATGGAGATTGCTTGGGGTCTA 903
Query 886 AGAAACAGCGACCAACCGTTCTTGTGGGTCGTACGGGGTGGTTCGGTA-GT--C-CA--- 938
||||||||||||||||| ||||||| ||||||||||| |||||| || || | ||
Sbjct 904 AGAAACAGCGACCAACCTTTCTTGTTGGTCGTACGGGTTGGTTCAGTCCGTGGCACAGAA 963
Query 939 TGG-T-GCAGA-A-T---GGATC-GA--A-C--A--GCTTCATGAGAAAGGAAAGATAGT 983
||| | | ||| | | ||| || | | | |||| ||||||| |||||||||||
Sbjct 964 TGGATCG-AGACAATCCCGGAAGAGATCATCGCAAAGCTTAATGAGAAGGGAAAGATAGT 1022
Query 984 GAATTGGGCCCCACAACAAGAGGTTCTAAAGCATCAAGCCATTGGAGGATTCTTGACACA 1043
||| ||||| || |||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct 1023 GAAATGGGCTCCGCAACAAGACGTTCTAAAGCATCGAGCCATTGGGGGATTCTTGACACA 1082
Query 1044 CAATGGTTGGAACTCGACGGTTGAGAGTGTTTTTGAAGGCGTCCCTATGATATGTATGCC 1103
|||||||||| |||||||||||||||||||| ||||| |||||||||||| ||| ||||
Sbjct 1083 TAATGGTTGGAGCTCGACGGTTGAGAGTGTTTGTGAAGCCGTCCCTATGATCTGTTTGCC 1142
Query 1104 TTTT-GTATGGGACCAATTGCTTAATGCAAGATTTGTTAGTGATGTATGGATGGTTGGGC 1162
||| || ||||||||| |||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1143 TTTCCGT-TGGGACCAAATGCTAAATGCAAGATTTGTTAGCGATGTATGGATGGTCGGTA 1201
Query 1163 TGCATCTAGAGGGTCGGATTGAGAGGAATGTGATTGAGGGAATGATAAGAAGATTATTT- 1221
| ||||||||| |||| |||||||||||| ||| ||| || |||||| ||||||||
Sbjct 1202 TAAATCTAGAGGATCGGGTTGAGAGGAATGAGATCGAGAGAGCGATAAGGAGATTATTGG 1261
Query 1222 TCGGAAACTGAAGGAAAAGCGATCCGAGAGAGGATGGAAATTCTTAAGGAGAATGTAG-G 1280
| |||| |||||||| |||| |||||||||||||| || ||||||| || || |||| |
Sbjct 1262 T-GGAACCTGAAGGAGAAGCCATCCGAGAGAGGATACAACTTCTTAAAGAAAAAGTAGAG 1320
Query 1281 AAGATCCGTTAA-ACCAAAA-GGTTCGGCGTATCGATCGT-TACAACATTTGATTGATTA 1337
| |||| ||| || |||| |||||||| |||| ||| | ||||| |||||||||||||
Sbjct 1321 A-GATC-GTTCGGAC-AAAACGGTTCGGCATATCAATC-TCTACAAAATTTGATTGATTA 1376
Query 1338 TATAACATATTTCTAG 1353
|||| ||| |||||||
Sbjct 1377 TATATCATCTTTCTAG 1392
> Ahg940017 jgi|Araly1|940017|scaffold_600561.1
Length=999
Score = 292 bits (158), Expect = 3e-78
Identities = 267/316 (84%), Gaps = 21/316 (7%)
Strand=Plus/Plus
Query 174 ACAGATCCCAGATGGCTTGT-CTGAAACAGAGACAAGAACTCACGATATCACACTTCTCC 232
|||||||||||||||||||| | |||||||||| ||||||| || ||| || ||||||||
Sbjct 95 ACAGATCCCAGATGGCTTGTAC-GAAACAGAGAAAAGAACTAACAATACCAAACTTCTCC 153
Query 233 TAACGCTTCTCAACC-GAAGCTGTGAGTCTCCATTTCGTGAATGTTTGACTAAACTTTTG 291
|||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||||| |||
Sbjct 154 TAACACTTATCAACCGGAA-CTGTGAGTCTCCGTTTCGTGACTGTTTGACTAAACCGTTG 212
Query 292 CAGTCTGCAGATTCAGAAACAGGGGAAGAGAAACAGAGGATTAGCTGTTTGATCGATGAT 351
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 213 CAGTCTGCAGATTCAGAAACAGGGGAAGATAAACAGAGGATTAGCTGTTTGATCGATGAT 272
Query 352 TCTGGATGGATATTCACACAGCCCGTTGCTCAGAGTTTCAATCTCCCGAGATTGGTCCTT 411
| ||||||||| ||| |||| ||| ||||||| | | || || |||||| ||| |
Sbjct 273 TTTGGATGGATGTTCGCACAACCCATTGCTCA-A----C--TC-CC-GAGATTAGTCGTC 323
Query 412 AAC-ACCT-ACAAAGTCTCCTTCTTTCGG-GACCATTTTGTTCTTCCTCAA-CTCCGTCG 467
| | | ||| |||||||||||||| | ||| |||||||||||| || ||||| ||
Sbjct 324 AGTGAGTTTACA--GTCTCCTTCTTTCGAAG-CCAATTTGTTCTTCCT-AAGCTCCGCCG 379
Query 468 TGAAATGTATCTTCCA 483
|||| |||||||||||
Sbjct 380 TGAAGTGTATCTTCCA 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5